ZFIN Lab: Shubin Lab

ZFIN ID: ZDB-LAB-150427-2

Shubin Lab

PI/Director:	Shubin, Neil
Contact Person:	Westlund, John
Email:	jmwestlund@uchicago.edu
URL:	http://shubinlab.uchicago.edu/people.html
Address:	The Laboratory of Professor Neil Shubin The University of Chicago 1027 E 57th Street, Culver Hall Chicago IL 60637
Country:	United States
Phone:	773-834-4774
Fax:
Line Designation:	ch

GENOMIC FEATURES ORIGINATING FROM THIS LAB

Show all 15 genomic features

STATEMENT OF RESEARCH INTERESTS

LAB MEMBERS

Adachi, Noritaka Post-Doc	Gehrke, Andrew R. Graduate Student	Pieretti, Joyce Graduate Student
Westlund, John Administrative Staff

ZEBRAFISH PUBLICATIONS OF LAB MEMBERS

Ali, S., Abrar, M., Hussain, I., Batool, F., Raza, R.Z., Khatoon, H., Zoia, M., Visel, A., Shubin, N.H., Osterwalder, M., Abbasi, A.A. (2023) Identification of ancestral gnathostome Gli3 enhancers with activity in mammals. Development, growth & differentiation. 66(1):75-88

Marlétaz, F., de la Calle-Mustienes, E., Acemel, R.D., Paliou, C., Naranjo, S., Martínez-García, P.M., Cases, I., Sleight, V.A., Hirschberger, C., Marcet-Houben, M., Navon, D., Andrescavage, A., Skvortsova, K., Duckett, P.E., González-Rajal, Á., Bogdanovic, O., Gibcus, J.H., Yang, L., Gallardo-Fuentes, L., Sospedra, I., Lopez-Rios, J., Darbellay, F., Visel, A., Dekker, J., Shubin, N., Gabaldón, T., Nakamura, T., Tena, J.J., Lupiáñez, D.G., Rokhsar, D.S., Gómez-Skarmeta, J.L. (2023) The little skate genome and the evolutionary emergence of wing-like fins. Nature. 616(7957):495-503

Ali, S., Arif, I., Iqbal, A., Hussain, I., Abrar, M., Khan, M.R., Shubin, N., Abbasi, A.A. (2020) Comparative genomic analysis of human GLI2 locus using slowly evolving fish revealed the ancestral gnathostome set of early developmental enhancers. Developmental Dynamics : an official publication of the American Association of Anatomists. 250(5):669-683

Zhou, T., Li, N., Jin, Y., Zeng, Q., Prabowo, W., Liu, Y., Tian, C., Bao, L., Liu, S., Yuan, Z., Fu, Q., Gao, S., Gao, D., Dunham, R., Shubin, N.H., Liu, Z. (2018) Chemokine C-C motif ligand 33 is a key regulator of teleost fish barbel development. Proceedings of the National Academy of Sciences of the United States of America. 115(22):E5018-E5027

Letelier, J., de la Calle-Mustienes, E., Pieretti, J., Naranjo, S., Maeso, I., Nakamura, T., Pascual-Anaya, J., Shubin, N.H., Schneider, I., Martinez-Morales, J.R., Gómez-Skarmeta, J.L. (2018) A conserved Shh cis-regulatory module highlights a common developmental origin of unpaired and paired fins. Nature Genetics. 50(4):504-509

Nakamura, T., Gehrke, A.R., Lemberg, J., Szymaszek, J., Shubin, N.H. (2016) Digits and fin rays share common developmental histories. Nature. 537(7619):225-228

Adachi, N., Robinson, M., Goolsbee, A., Shubin, N.H. (2016) Regulatory evolution of Tbx5 and the origin of paired appendages. Proceedings of the National Academy of Sciences of the United States of America. 113(36):10115-20

Braasch, I., Gehrke, A.R., Smith, J.J., Kawasaki, K., Manousaki, T., Pasquier, J., Amores, A., Desvignes, T., Batzel, P., Catchen, J., Berlin, A.M., Campbell, M.S., Barrell, D., Martin, K.J., Mulley, J.F., Ravi, V., Lee, A.P., Nakamura, T., Chalopin, D., Fan, S., Wcisel, D., Cañestro, C., Sydes, J., Beaudry, F.E., Sun, Y., Hertel, J., Beam, M.J., Fasold, M., Ishiyama, M., Johnson, J., Kehr, S., Lara, M., Letaw, J.H., Litman, G.W., Litman, R.T., Mikami, M., Ota, T., Saha, N.R., Williams, L., Stadler, P.F., Wang, H., Taylor, J.S., Fontenot, Q., Ferrara, A., Searle, S.M., Aken, B., Yandell, M., Schneider, I., Yoder, J.A., Volff, J.N., Meyer, A., Amemiya, C.T., Venkatesh, B., Holland, P.W., Guiguen, Y., Bobe, J., Shubin, N.H., Di Palma, F., Alföldi, J., Lindblad-Toh, K., Postlethwait, J.H. (2016) The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nature Genetics. 48(4):427-37

Nakamura, T., Klomp, J., Pieretti, J., Schneider, I., Gehrke, A.R., Shubin, N.H. (2015) Molecular mechanisms underlying the exceptional adaptations of batoid fins. Proceedings of the National Academy of Sciences of the United States of America. 112(52):15940-5

Gehrke, A.R., Schneider, I., de la Calle-Mustienes, E., Tena, J.J., Gomez-Marin, C., Chandran, M., Nakamura, T., Braasch, I., Postlethwait, J.H., Gómez-Skarmeta, J.L., Shubin, N.H. (2015) Deep conservation of wrist and digit enhancers in fish. Proceedings of the National Academy of Sciences of the United States of America. 112(3):803-8

Amemiya, C.T., Alfoldi, J., Lee, A.P., Fan, S., Philippe, H., MacCallum, I., Braasch, I., Manousaki, T., Schneider, I., Rohner, N., Organ, C., Chalopin, D., Smith, J.J., Robinson, M., Dorrington, R.A., Gerdol, M., Aken, B., Biscotti, M.A., Barucca, M., Baurain, D., Berlin, A.M., Blatch, G.L., Buonocore, F., Burmester, T., Campbell, M.S., Canapa, A., Cannon, J.P., Christoffels, A., de Moro, G., Edkins, A.L., Fan, L., Fausto, A.M., Feiner, N., Forconi, M., Gamieldien, J., Gnerre, S., Gnirke, A., Goldstone, J.V., Haerty, W., Hahn, M.E., Hesse, U., Hoffmann, S., Johnson, J., Karchner, S.I., Karaku, S., Lara, M., Levin, J.Z., Litman, G.W., Mauceli, E., Miyake, T., Mueller, M.G., Nelson, D.R., Nitsche, A., Olmo, E., Ota, T., Pallavicini, A., Panji, S., Picone, B., Ponting, C.P., Prohaska, S.J., Przybylski, D., Saha, N.R., Ravi, V., Ribeiro, F.J., Sauka-Spengler, T., Scapigliati, G., Searle, S.M.J., Sharpe, T., Simakov, O., Stadler, P.F., Stegeman, J.J., Sumiyama, K., Tabbaa, D., Tafer, H., Turner-Maier, J., van Heusden, P., White, S., Williams, L., Yandell, M., Brinkmann, H., Volff, J.N., Tabin, C.J., Shubin, N., Schartl, M., Jaffe, D.B., Postlethwait, J.H., Venkatesh, B., Palma, F.D., Lander, E.S., Meyer, A., and Lindblad-Toh, K. (2013) The African coelacanth genome provides insights into tetrapod evolution. Nature. 496:311-316

Schneider, I., and Shubin, N.H. (2012) Making limbs from fins. Developmental Cell. 23(6):1121-1122

Schneider, I., Aneas, I., Gehrke, A.R., Dahn, R.D., Nobrega, M.A., and Shubin, N.H. (2011) Appendage expression driven by the Hoxd Global Control Region is an ancient gnathostome feature. Proceedings of the National Academy of Sciences of the United States of America. 108(31):12782-6

Saotome, K., Hayashi, K., Adachi, N., Nakamura, Y., and Nakamura, M. (2010) Isolation and characterization of Vasa in the frog Rana rugosa. Journal of experimental zoology. Part A, Ecological genetics and physiology. 313(7):452-459