Beaudoin et al., 2018 - Analyses of mRNA structure dynamics identify embryonic gene regulatory programs. Nature structural & molecular biology   25(8):677-686 Full text @ Nat. Struct. Mol. Biol.
58 Genes / Markers
Marker Type Symbol Name
Gene ankrd12 ankyrin repeat domain 12
Gene anxa5b annexin A5b
Gene atf1 activating transcription factor 1
Gene atf7ip activating transcription factor 7 interacting protein
Gene brd4 bromodomain containing 4
Gene ccna1 cyclin A1
Gene ccnb1 cyclin B1
Gene cdc14b cell division cycle 14B
Gene cdc25b cell division cycle 25B
Gene cldn7b claudin 7b
Gene copg2 COPI coat complex subunit gamma 2
Gene coro1ca coronin, actin binding protein, 1Ca
Gene ctdspl2a CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2a
Gene ctdspl2b CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2b
Gene cybrd1 cytochrome b reductase 1
Gene dag1 dystroglycan 1
Gene dctpp1 dCTP pyrophosphatase 1
Gene ddx3xa DEAD-box helicase 3 X-linked a
Gene dnajc1 DnaJ (Hsp40) homolog, subfamily C, member 1
Gene emc6 ER membrane protein complex subunit 6
Gene fam171a1 family with sequence similarity 171 member A1
Gene fdx1 ferredoxin 1
Gene ide insulin-degrading enzyme
Gene igf2bp3 insulin-like growth factor 2 mRNA binding protein 3
Gene ivns1abpb influenza virus NS1A binding protein b
Gene kat7b K(lysine) acetyltransferase 7b
Gene kif22 kinesin family member 22
Gene lbr lamin B receptor
Gene mapre1a microtubule-associated protein, RP/EB family, member 1a
Gene mycla MYCL proto-oncogene, bHLH transcription factor a
Gene naa15a N-alpha-acetyltransferase 15, NatA auxiliary subunit a
Gene nanog nanog homeobox
Gene nras NRAS proto-oncogene, GTPase
Gene papolg poly(A) polymerase gamma
Gene parn poly(A)-specific ribonuclease (deadenylation nuclease)
Gene pdia6 protein disulfide isomerase family A, member 6
Gene pgrmc2 progesterone receptor membrane component 2
Gene pip4k2ca phosphatidylinositol-5-phosphate 4-kinase, type II, gamma a
Gene plscr3b phospholipid scramblase 3b
Gene ppp1r3b protein phosphatase 1, regulatory subunit 3B
Gene ppp6c protein phosphatase 6, catalytic subunit
Gene ppt2a.4 palmitoyl-protein thioesterase 2a, tandem duplicate 4
Gene psme3 proteasome activator subunit 3
Gene rab33ba RAB33B, member RAS oncogene family a
Gene rimkla ribosomal modification protein rimK-like family member A
Gene rpn1 ribophorin I
Gene slc29a1a solute carrier family 29 member 1a
Gene smek1 SMEK homolog 1, suppressor of mek1 (Dictyostelium)
Gene spint2 serine peptidase inhibitor, Kunitz type, 2
Gene st14a ST14 transmembrane serine protease matriptase a
Gene tarbp2 TAR (HIV) RNA binding protein 2
Gene tktb transketolase b
Gene ube2g1a ubiquitin-conjugating enzyme E2G 1a (UBC7 homolog, yeast)
Gene ypel3 yippee-like 3
Gene zc3h18 zinc finger CCCH-type containing 18
Gene zfand5b zinc finger, AN1-type domain 5b
Gene znf281b zinc finger protein 281b
Gene znf395a zinc finger protein 395a