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ZIRC
Moreno-Mateos et al., 2015 - CRISPRscan: designing highly efficient sgRNAs for CRISPR-Cas9 targeting in vivo. Nature Methods   12:982-8 Full text @ Nat. Methods
109 Genes / Markers
Marker Type Symbol Name
Gene afdna afadin, adherens junction formation factor a
Gene ajuba ajuba LIM protein
Gene alk ALK receptor tyrosine kinase
Gene ambra1b autophagy/beclin-1 regulator 1b
Gene ankhd1 ankyrin repeat and KH domain containing 1
Gene arhgap32b Rho GTPase activating protein 32b
Gene arid1ab AT rich interactive domain 1Ab (SWI-like)
Gene atn1 atrophin 1
Gene atxn1b ataxin 1b
Gene auts2a activator of transcription and developmental regulator AUTS2 a
Gene bcl9l bcl9 like
Gene cbl Cbl proto-oncogene, E3 ubiquitin protein ligase
Gene cdh1 cadherin 1, type 1, E-cadherin (epithelial)
Gene chpf2 chondroitin polymerizing factor 2
Gene chst11 carbohydrate (chondroitin 4) sulfotransferase 11
Gene cica capicua transcriptional repressor a
Gene crebbpa CREB binding protein a
Gene dchs1b dachsous cadherin-related 1b
Gene egr2a early growth response 2a
Gene egr2b early growth response 2b
Gene ehhadh enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase
Gene fam214b family with sequence similarity 214 member B
Gene fam222bb family with sequence similarity 222 member Bb
Gene fem1a fem-1 homolog a (C. elegans)
Gene foxc1a forkhead box C1a
Gene hcn4 hyperpolarization activated cyclic nucleotide-gated potassium channel 4
Gene hexim1 HEXIM P-TEFb complex subunit 1
Gene iffo1a intermediate filament family orphan 1a
Gene igsf9ba immunoglobulin superfamily, member 9Ba
Gene igsf9bb immunoglobulin superfamily, member 9Bb
Gene ino80da INO80 complex subunit Da
Gene irs4a insulin receptor substrate 4a
Gene june JunE proto-oncogene, AP-1 transcription factor subunit
Gene kcnj1a.6 potassium inwardly-rectifying channel, subfamily J, member 1a, tandem duplicate 6
Gene kmt2bb lysine (K)-specific methyltransferase 2Bb
Gene kmt2d lysine (K)-specific methyltransferase 2D
Gene lats1 large tumor suppressor kinase 1
Gene lrfn2b leucine rich repeat and fibronectin type III domain containing 2b
Gene ltk leukocyte receptor tyrosine kinase
Gene magixa MAGI family member, X-linked a
Gene mast1b microtubule associated serine/threonine kinase 1b
Gene mical3a microtubule associated monooxygenase, calponin and LIM domain containing 3a
Gene myo16 myosin XVI
Gene mypn myopalladin
Gene nanos3 nanos homolog 3
Gene ndr1 nodal-related 1
Gene ndr2 nodal-related 2
Gene nectin1b nectin cell adhesion molecule 1b
Gene neurod4 neuronal differentiation 4
Gene nkd3l NKD inhibitor of WNT signaling pathway 3, like
Gene notch2 notch receptor 2
Gene nrxn2b neurexin 2b
Gene nyap2b neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2b
Gene olig1 oligodendrocyte transcription factor 1
Gene pcdh15a protocadherin-related 15a
Gene pcnx4 pecanex 4
Gene pcxa pyruvate carboxylase a
Gene peli2 pellino E3 ubiquitin protein ligase family member 2
Gene plagl2 pleiomorphic adenoma gene-like 2
Gene polr2a polymerase (RNA) II (DNA directed) polypeptide A
Gene ppp1r13ba protein phosphatase 1, regulatory subunit 13Ba
Gene prr12a proline rich 12a
Gene prr12b proline rich 12b
Gene prrc2a proline-rich coiled-coil 2A
Gene pskh1 protein serine kinase H1
Gene pwwp2b PWWP domain containing 2B
Gene rerea arginine-glutamic acid dipeptide (RE) repeats a
Gene rfx5 regulatory factor X, 5
Gene rho rhodopsin
Gene rprd2a regulation of nuclear pre-mRNA domain containing 2a
Gene s1pr2 sphingosine-1-phosphate receptor 2
Gene sema6bb sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Bb
Gene shank3a SH3 and multiple ankyrin repeat domains 3a
Gene si:ch211-79k12.2 si:ch211-79k12.2
Gene si:dkey-156n14.5 si:dkey-156n14.5
Gene si:dkeyp-104h9.5 si:dkeyp-104h9.5
Gene six5 SIX homeobox 5
Gene slitrk3b SLIT and NTRK-like family, member 3b
Gene smarce1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
Gene sox19a SRY-box transcription factor 19a
Gene sox32 SRY-box transcription factor 32
Gene sp1 sp1 transcription factor
Gene srebf2 sterol regulatory element binding transcription factor 2
Gene srrm1 serine/arginine repetitive matrix 1
Gene suco SUN domain containing ossification factor
Gene synpo2la synaptopodin 2-like a
Gene taldo1 transaldolase 1
Gene tanc2a tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2a
Gene tbc1d30 TBC1 domain family, member 30
Gene tbx6 T-box transcription factor 6
Gene tbx21 T-box transcription factor 21
Gene tbxta T-box transcription factor Ta
Gene tet3 tet methylcytosine dioxygenase 3
Gene thtpa thiamine triphosphatase
Gene tns2a tensin 2a
Gene tns2b tensin 2b
Gene tp53bp2a tumor protein p53 binding protein, 2a
Gene trim71 tripartite motif containing 71, E3 ubiquitin protein ligase
Gene twnk twinkle mtDNA helicase
Gene usp8 ubiquitin specific peptidase 8
Gene wfikkn1 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1
Gene zc3h4 zinc finger CCCH-type containing 4
Gene zfpm1 zinc finger protein, FOG family member 1
Gene zgc:153012 zgc:153012
Gene zic1 zic family member 1 (odd-paired homolog, Drosophila)
Gene zic3 zic family member 3 heterotaxy 1 (odd-paired homolog, Drosophila)
Gene znf219 zinc finger protein 219
Gene znf609b zinc finger protein 609b
Gene znf703 zinc finger protein 703