ZFIN Publication: Sanger(Havana Group) and ZFIN Staff: Genes / Markers

Sanger(Havana Group) and ZFIN Staff - Manual Annotation of the zebrafish genome. Manually curated data

264 Genes / Markers
Marker Type	Symbol	Name
Gene	abca3b	ATP-binding cassette, sub-family A (ABC1), member 3b
Gene	abca4b	ATP-binding cassette, sub-family A (ABC1), member 4b
Gene	abcc1	ATP binding cassette subfamily C member 1 (ABCC1 blood group)
Gene	abcd1	ATP-binding cassette, sub-family D (ALD), member 1
Gene	abcd4	ATP-binding cassette, sub-family D (ALD), member 4
Gene	ablim1b	actin binding LIM protein 1b
Gene	acap3a	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3a
Gene	aclyb	ATP citrate lyase b
Gene	actl6b	actin-like 6B
Gene	adap2	ArfGAP with dual PH domains 2
Gene	adarb2	adenosine deaminase RNA specific B2 (inactive)
Gene	aff2	AF4/FMR2 family, member 2
Gene	agbl4	AGBL carboxypeptidase 4
Gene	allc	allantoicase
Gene	amot	angiomotin
Gene	ank3b	ankyrin 3b
Gene	ap2a1	adaptor related protein complex 2 subunit alpha 1
Gene	arhgap21a	Rho GTPase activating protein 21a
Gene	arhgef2	rho/rac guanine nucleotide exchange factor (GEF) 2
Gene	arpin	actin related protein 2/3 complex inhibitor
Gene	arrdc3a	arrestin domain containing 3a
Gene	atp2a1l	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1, like
Gene	atp8b4	ATPase phospholipid transporting 8B4
Gene	bach2b	BTB and CNC homology 1, basic leucine zipper transcription factor 2b
Gene	bbof1b	basal body orientation factor 1b
Gene	bcl11ba	BCL11 transcription factor B a
Gene	bglap	bone gamma-carboxyglutamate (gla) protein
Gene	btr04	bloodthirsty-related gene family, member 4
Gene	btr21	bloodthirsty-related gene family, member 21
Gene	c1qbp	complement component 1, q subcomponent binding protein
Gene	c2cd5	C2 calcium dependent domain containing 5
Gene	c4b	complement C4B (Chido/Rodgers blood group)
Gene	ca10a	carbonic anhydrase Xa
Gene	ca4c	carbonic anhydrase IV c
Gene	cactin	cactin
Gene	calcr	calcitonin receptor
Gene	carmil2	capping protein regulator and myosin 1 linker 2
Gene	cast	calpastatin
Gene	cbx6b	chromobox homolog 6b
Gene	ccdc141	coiled-coil domain containing 141
Gene	ccdc25	coiled-coil domain containing 25
Gene	ccl20a.3	chemokine (C-C motif) ligand 20a, duplicate 3
Gene	ccl38.6	chemokine (C-C motif) ligand 38, duplicate 6
Gene	ccr12b.1	chemokine (C-C motif) receptor 12b, tandem duplicate 1
Gene	cd79b	CD79b molecule, immunoglobulin-associated beta
Gene	cdc42ep1a	CDC42 effector protein (Rho GTPase binding) 1a
Gene	celsr2	cadherin, EGF LAG seven-pass G-type receptor 2
Gene	cep43	centrosomal protein 43
Gene	chd1	chromodomain helicase DNA binding protein 1
Gene	cngb3.1	cyclic nucleotide gated channel subunit beta 3, tandem duplicate 1
Gene	cntln	centlein, centrosomal protein
Gene	col19a1	collagen, type XIX, alpha 1
Gene	cox6b2	cytochrome c oxidase subunit 6B2
Gene	cpamd8	C3 and PZP like alpha-2-macroglobulin domain containing 8
Gene	creb5b	cAMP responsive element binding protein 5b
Gene	crebbpb	CREB binding protein b
Gene	crip1	cysteine-rich protein 1
Gene	crp2	C-reactive protein 2
Gene	cry5	cryptochrome circadian regulator 5
Gene	crygm2d10	crystallin, gamma M2d10
Gene	csmd3a	CUB and Sushi multiple domains 3a
Gene	cxcr5	chemokine (C-X-C motif) receptor 5
Gene	cyp11a1.2	cytochrome P450 family 11 subfamily A member 1, tandem duplicate 2
Gene	cyp2k19	cytochrome P450, family 2, subfamily k, polypeptide 19
Gene	dctn4	dynactin 4
Gene	ddx1	DEAD (Asp-Glu-Ala-Asp) box helicase 1
Gene	dennd2c	DENN/MADD domain containing 2C
Gene	dmxl2	Dmx-like 2
Gene	dock3	dedicator of cytokinesis 3
Gene	dync1i2a	dynein, cytoplasmic 1, intermediate chain 2a
Gene	ebf1a	EBF transcription factor 1a
Gene	ecpas	Ecm29 proteasome adaptor and scaffold
Gene	eda	ectodysplasin A
Gene	eif4h	eukaryotic translation initiation factor 4h
Gene	epcam	epithelial cell adhesion molecule
lincRNA Gene	erv	endogenous retrovirus
Gene	fam20cb	FAM20C golgi associated secretory pathway kinase b
Gene	fam49bb	family with sequence similarity 49 member Bb
Gene	fastkd1	FAST kinase domains 1
Gene	fgf11b	fibroblast growth factor 11b
Gene	frmpd2	FERM and PDZ domain containing 2
Gene	ftr26	finTRIM family, member 26
Pseudogene	ftr39p	finTRIM family, member 39, pseudogene
Pseudogene	ftr52p	finTRIM family, member 52, pseudogene
Gene	ftr58	finTRIM family, member 58
Gene	ftr59	finTRIM family, member 59
Gene	ftr60	finTRIM family, member 60
Gene	gabrb2a	gamma-aminobutyric acid type A receptor subunit beta2a
Gene	gabrd	gamma-aminobutyric acid type A receptor subunit delta
Gene	gatb	glutamyl-tRNA(Gln) amidotransferase, subunit B
Gene	gdpd3b	glycerophosphodiester phosphodiesterase domain containing 3b
Gene	gjb10	gap junction protein beta 10
Gene	gpc6a	glypican 6a
Gene	gphb5	glycoprotein hormone subunit beta 5
Gene	gpr108	G protein-coupled receptor 108
Gene	gpr156	G protein-coupled receptor 156
Gene	greb1l	GREB1 like retinoic acid receptor coactivator
Gene	grinaa	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1a (glutamate binding)
Gene	grip2a	glutamate receptor interacting protein 2a
Gene	grm6a	glutamate receptor, metabotropic 6a
Gene	gtf2ird1	GTF2I repeat domain containing 1
Gene	gulp1b	GULP PTB domain containing engulfment adaptor 1b
Gene	hcfc2	host cell factor C2
Gene	her4.2	hairy-related 4, tandem duplicate 2
Gene	hmga1a	high mobility group AT-hook 1a
Gene	hmgb1b	high mobility group box 1b
Gene	hnrnpm	heterogeneous nuclear ribonucleoprotein M
Gene	igsf9ba	immunoglobulin superfamily, member 9Ba
Gene	impg2a	interphotoreceptor matrix proteoglycan 2a
Gene	impg2b	interphotoreceptor matrix proteoglycan 2b
Gene	isg15	ISG15 ubiquitin like modifier
Gene	itga2b	integrin, alpha 2b
Gene	itgam.2	integrin, alpha M (complement component 3 receptor 3 subunit), tandem duplicate 2
Gene	itih3b.2	inter-alpha-trypsin inhibitor heavy chain 3b, tandem duplicate 2
Gene	kansl1a	KAT8 regulatory NSL complex subunit 1a
Gene	kaznb	kazrin, periplakin interacting protein b
Gene	kcnh5b	potassium voltage-gated channel, subfamily H (eag-related), member 5b
Gene	kdm4aa	lysine (K)-specific demethylase 4A, genome duplicate a
Gene	khdc4	KH domain containing 4, pre-mRNA splicing factor
Gene	kif21a	kinesin family member 21A
Gene	kif26bb	kinesin family member 26Bb
Gene	kirrel3l	kirre like nephrin family adhesion molecule 3, like
Gene	klf11b	Kruppel like factor 11b
Gene	kmt2ca	lysine (K)-specific methyltransferase 2Ca
Gene	lhfpl4a	LHFPL tetraspan subfamily member 4a
Gene	lonrf4	LON peptidase N-terminal domain and ring finger 4
Gene	lrp1ba	low density lipoprotein receptor-related protein 1Ba
Gene	lrrc32	leucine rich repeat containing 32
Gene	lyplal1	lysophospholipase like 1
Gene	map3k20b	mitogen-activated protein kinase kinase kinase 20b
Gene	map4k3a	mitogen-activated protein kinase kinase kinase kinase 3a
Gene	mapkap1	MAPK associated protein 1
Gene	mark3b	MAP/microtubule affinity-regulating kinase 3b
Gene	mat2aa	methionine adenosyltransferase 2Aa
Gene	mat2b	methionine adenosyltransferase 2 non-catalytic beta subunit methionine
Gene	megf8	multiple EGF-like-domains 8
Gene	mettl17	methyltransferase like 17
Gene	mhc1uca	major histocompatibility complex class I UCA
Gene	mhc1zga	major histocompatibility complex class I ZGA
Gene	mhc1zia	major histocompatibility complex class I ZIA
Gene	mhc1zja	major histocompatibility complex class I ZJA
Gene	mhc2dbb	major histocompatibility complex class II DBB gene
Gene	mia3	MIA SH3 domain ER export factor 3
Gene	mical3b	microtubule associated monooxygenase, calponin and LIM domain containing 3b
Gene	micall1b.2	MICAL like 1b, duplicate 2
Gene	mmp25a	matrix metallopeptidase 25a
Gene	mtcl2	microtubule crosslinking factor 2
Gene	mtcl3a	MTCL family member 3a
Gene	mtmr3	myotubularin related protein 3
Gene	mvb12a	multivesicular body subunit 12A
Gene	mylkb	myosin light chain kinase b
Gene	ndp	norrin cystine knot growth factor NDP
Gene	nedd4a	NEDD4 E3 ubiquitin protein ligase a
Gene	neu3.4	sialidase 3 (membrane sialidase), tandem duplicate 4
Gene	neu3.5	sialidase 3 (membrane sialidase), tandem duplicate 5
Gene	neurl1b	neuralized E3 ubiquitin protein ligase 1B
Gene	nfatc4	nuclear factor of activated T cells 4
Gene	ngef	neuronal guanine nucleotide exchange factor
Gene	nisch	nischarin
Gene	nme2a	NME/NM23 nucleoside diphosphate kinase 2a
Gene	nphp4	nephronophthisis 4
Gene	npy1r	neuropeptide Y receptor Y1
Gene	npy8ar	neuropeptide Y receptor Y8a
Gene	ntan1	N-terminal asparagine amidase
Gene	ntng2b	netrin g2b
Gene	ntrk2a	neurotrophic tyrosine kinase, receptor, type 2a
Gene	olfcd1	olfactory receptor C family, d1
Gene	olfcd3	olfactory receptor C family, d3
Gene	or61c3	odorant receptor, family 61, subfamily C, member 3
Gene	or71al2	odorant receptor, family 71, subfamily AL, member 2
Gene	otud4	OTU deubiquitinase 4
Gene	pdxkb	pyridoxal (pyridoxine, vitamin B6) kinase b
Gene	pear1	platelet endothelial aggregation receptor 1
Gene	pip5k1ca	phosphatidylinositol-4-phosphate 5-kinase, type I, gamma a
Gene	plch2a	phospholipase C, eta 2a
Gene	postna	periostin, osteoblast specific factor a
Gene	ppp2r3a	protein phosphatase 2, regulatory subunit B'', alpha
Gene	prf1.2	perforin 1.2
Gene	prf1.8	perforin 1.8
Gene	prkcg	protein kinase C, gamma
Gene	proca	protein C (inactivator of coagulation factors Va and VIIIa), a
Gene	prr33	proline rich 33
Gene	ptbp2b	polypyrimidine tract binding protein 2b
Gene	pttg1	PTTG1 regulator of sister chromatid separation, securin
Gene	rapgef5b	Rap guanine nucleotide exchange factor (GEF) 5b
Gene	rassf6	Ras association domain family member 6
Gene	rbsn	rabenosyn, RAB effector
Gene	rictorb	RPTOR independent companion of MTOR, complex 2b
Gene	rims1b	regulating synaptic membrane exocytosis 1b
Gene	rpgrip1	RPGR interacting protein 1
Gene	rph3al	rabphilin 3A-like (without C2 domains)
Gene	rreb1b	ras responsive element binding protein 1b
Gene	rubcn	rubicon autophagy regulator
Gene	scap	SREBF chaperone
Gene	scarb1	scavenger receptor class B, member 1
Gene	scml2	Scm polycomb group protein like 2
Gene	scxb	scleraxis bHLH transcription factor b
Gene	sdr42e1	short chain dehydrogenase/reductase family 42E, member 1
Gene	selenok	selenoprotein K
Gene	selp	selectin P
Gene	sesn1	sestrin 1
lincRNA Gene	si:ch211-139k8.2	si:ch211-139k8.2
ncRNA Gene	si:ch211-273l18.4	si:ch211-273l18.4
Gene	si:ch211-281k19.2	si:ch211-281k19.2
Gene	si:ch211-84m6.5	si:ch211-84m6.5
Gene	si:ch73-25f10.6	si:ch73-25f10.6
Gene	si:ch73-286h23.3	si:ch73-286h23.3
Gene	si:ch73-286h23.4	si:ch73-286h23.4
Gene	si:dkey-228l14.1	si:dkey-228l14.1
Gene	si:dkey-240e12.6	si:dkey-240e12.6
Gene	si:dkey-266m15.7	si:dkey-266m15.7
Gene	si:dkey-52p2.5	si:dkey-52p2.5
Gene	si:dkeyp-9d4.3	si:dkeyp-9d4.3
Gene	six9	SIX homeobox 9
Gene	slc12a7b	solute carrier family 12 member 7b
Gene	slc22a5	solute carrier family 22 member 5
Gene	slc25a13	solute carrier family 25 member 13
Gene	slc2a1b	solute carrier family 2 member 1b
Gene	slc7a10b	solute carrier family 7 member 10b
Gene	slc7a8b	solute carrier family 7 member 8b
Gene	smim8	small integral membrane protein 8
Gene	smtlb	somatolactin beta
Gene	sorbs1	sorbin and SH3 domain containing 1
Gene	sorbs2b	sorbin and SH3 domain containing 2b
Gene	sox18	SRY-box transcription factor 18
Gene	sspn	sarcospan (Kras oncogene-associated gene)
Gene	sst7	somatostatin family member 7
Gene	stk36	serine/threonine kinase 36 (fused homolog, Drosophila)
Gene	swt1	SWT1 RNA endoribonuclease homolog
Gene	taar12f	trace amine associated receptor 12f
Gene	taar13c	trace amine associated receptor 13c
Gene	tbc1d4	TBC1 domain family, member 4
Gene	tcf7l1b	transcription factor 7 like 1b
Gene	tdrd15	tudor domain containing 15
Gene	telo2	TEL2, telomere maintenance 2, homolog (S. cerevisiae)
Gene	tjp1b	tight junction protein 1b
Gene	tnfaip3	tumor necrosis factor, alpha-induced protein 3
Gene	tns2b	tensin 2b
Gene	toporsa	topoisomerase I binding, arginine/serine-rich a
Gene	tpmt.1	thiopurine S-methyltransferase, tandem duplicate 1
Gene	tpmt.2	thiopurine S-methyltransferase, tandem duplicate 2
Gene	trpm2	transient receptor potential cation channel, subfamily M, member 2
Gene	tshz3a	teashirt zinc finger homeobox 3a
Gene	tspan1	tetraspanin 1
Gene	tssk6	testis-specific serine kinase 6
Gene	ttc39a	tetratricopeptide repeat domain 39A
Gene	tubb2b	tubulin, beta 2b
Gene	tulp1a	TUB like protein 1a
Gene	ucn3l	urocortin 3, like
Gene	ugt2a4	UDP glucuronosyltransferase 2 family, polypeptide A4
Gene	ugt8	UDP glycosyltransferase 8
Gene	uvssa	UV-stimulated scaffold protein A
Pseudogene	vrk1p	VRK serine/threonine kinase 1, pseudogene
Gene	waplb	WAPL cohesin release factor b
Gene	xkr5b	XK related 5b
Gene	xpa	xeroderma pigmentosum, complementation group A
Gene	zfp36l1a	zinc finger protein 36, C3H type-like 1a
Gene	zgc:112255	zgc:112255
Gene	zgc:112964	zgc:112964
Gene	zgc:152670	zgc:152670
Gene	zgc:171445	zgc:171445
Gene	zgc:171781	zgc:171781
Gene	znf512	zinc finger protein 512
Gene	znf990	zinc finger protein 990