ZFIN ID: ZDB-LAB-970408-67
Postlethwait Zebrafish Genetics Laboratory
PI/Director: Postlethwait, John H.
Contact Person: Postlethwait, John H.
Email: jpostle@oregon.uoregon.edu
URL: http://www.neuro.uoregon.edu/postle/PostleLab.html
Address: Institute of Neuroscience 1254 University of Oregon Eugene, OR 97403-1254 USA
Country: United States
Phone: (541) 346-4538
Fax: (541) 346-4548
Line Designation: b


GENOMIC FEATURES ORIGINATING FROM THIS LAB
Show all 12 genomic features


STATEMENT OF RESEARCH INTERESTS
Gene duplication is a common event, and principles that govern the evolution of duplicated genes impact the molecular genetic mechanisms of morphogenesis. An understanding of how duplicated genes evolve is especially important among fish because whole genome duplication has been a recurring theme in ray-fin fish phylogeny. To investigate genome structure in a teleost fish, we have placed over 1524 genes and ESTs and over 610 SSLPs (simple sequence length polymorphisms) on a zebrafish doubled haploid meiotic mapping panel (the Heat Shock Panel). Our mapping has revealed the following general principles: (1) The zebrafish genome shares large regions of conserved synteny with mammalian genomes, sometimes about as long as individual mammalian chromosomes. For example, results suggest that most of the loci on human chromosome 17 have remained syntenic since the divergence of ray-fin and lobe fin fish 450 million years ago. (2) Within conserved regions, intrachromosomal rearrangements have frequently altered gene order; thus, inversions have been much more common than chromosomal translocations. (3) Zebrafish chromosomes are mosaics of mammalian chromosomes. (4) Zebrafish frequently has two orthologues of many mammalian genes (about 30%), and these map in duplicated chromosome segments. This result suggests an ancient whole genome duplication event in the zebrafish lineage. When did this genome duplication occur in ray-fin fish phylogeny? Data remain scanty, but are consistent with the hypothesis that an ancient tetraploidization event occurred before the teleost radiation, and so is in the genomic heritage of all teleosts.

After gene duplication, usually one gene copy becomes mutationally silenced and disappear over time (nonfunctionalization). Alternatively, both duplicate copies may be preserved if either(1) beneficial mutations occur in one or both copies that allow the evolution of new functions (neofunctionalization), or if (2) degenerative mutations result in the partitioning of the tasks of the ancestral gene subfunctionalization). Thus, gene duplicates in teleost fish may sum together to perform the functions of their single copy mammalian orthologue. Furthermore, if duplicate gene subfunctions remained unresolved at the time that different teleost lineages diverged, then truly orthologous genes in different fish species may have different functions in development. And if both duplicate genes were completely intact at the time of lineage divergence, then independent nonfunctionalization of different copies in different lineages could lead to different gene contents in orthologous chromosome segments of different teleosts. If the hypothesis of a shared genome duplication is substantiated for teleost fish, then the comparative biology of the molecular genetic mechanisms of morphogenesis must address these principles that appear to govern the evolution of duplicate genes.


LAB MEMBERS
Amores, Angel Post-Doc Bassham, Susie Post-Doc Cañestro-García, Cristian Post-Doc
Cresko, William Post-Doc Yan, Yi-Lin Post-Doc BreMiller, Ruth Research Staff
Currey, Mark Research Staff Murphy, Joy Research Staff Starks, Amber M. Research Staff
Titus, Tom A. Research Staff Wilson, Catherine Research Staff He, Xinjun


ZEBRAFISH PUBLICATIONS OF LAB MEMBERS x
Wangler, M.F., Yamamoto, S., Chao, H.T., Posey, J.E., Westerfield, M., Postlethwait, J., Hieter, P., Boycott, K.M., Campeau, P.M., Bellen, H.J. (2017) Model Organisms Facilitate Rare Disease Diagnosis and Therapeutic Research. Genetics. 207:9-27
Kroeger, P.T., Drummond, B.E., Miceli, R., McKernan, M., Gerlach, G.F., Marra, A.N., Fox, A., McCampbell, K.K., Leshchiner, I., Rodriguez-Mari, A., BreMiller, R., Thummel, R., Davidson, A.J., Postlethwait, J., Goessling, W., Wingert, R.A. (2017) The zebrafish kidney mutant zeppelin reveals that brca2/fancd1 is essential for pronephros development. Developmental Biology. 428(1):148-163
Granneman, J.G., Kimler, V.A., Zhang, H., Ye, X., Luo, X., Postlethwait, J.H., Thummel, R. (2017) Lipid droplet biology and evolution illuminated by the characterization of a novel Perilipin in teleost fish. eLIFE. 6
Suarez-Bregua, P., Torres-Nuñez, E., Saxena, A., Guerreiro, P., Braasch, I., Prober, D.A., Moran, P., Cerda-Reverter, J.M., Du, S.J., Adrio, F., Power, D.M., Canario, A.V., Postlethwait, J.H., Bronner, M.E., Cañestro, C., Rotllant, J. (2017) Pth4, an ancient parathyroid hormone lost in eutherian mammals, reveals a new brain-to-bone signaling pathway. FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 31:569-583
Desvignes, T., Detrich, H.W., Postlethwait, J.H. (2016) Genomic conservation of erythropoietic microRNAs (erythromiRs) in white-blooded Antarctic icefish. Marine genomics. 30:27-34
Postlethwait, J.H., Yan, Y.L., Desvignes, T., Allard, C., Titus, T., Le François, N.R., Detrich, H.W. (2016) Embryogenesis and early skeletogenesis in the Antarctic Bullhead notothen, Notothenia coriiceps. Developmental dynamics : an official publication of the American Association of Anatomists. 245(11):1066-1080
Sukeena, J.M., Galicia, C.A., Wilson, J.D., McGinn, T., Boughman, J.W., Robison, B.D., Postlethwait, J.H., Braasch, I., Stenkamp, D.L., Fuerst, P.G. (2016) Characterization and Evolution of the Spotted Gar Retina. Journal of experimental zoology. Part B, Molecular and developmental evolution. 326(7):403-421
Talbot, J.C., Nichols, J.T., Yan, Y.L., Leonard, I.F., BreMiller, R.A., Amacher, S.L., Postlethwait, J.H., Kimmel, C.B. (2016) Pharyngeal morphogenesis requires fras1-itga8- dependent epithelial-mesenchymal interaction. Developmental Biology. 416(1):136-48
Askary, A., Smeeton, J., Paul, S., Schindler, S., Braasch, I., Ellis, N.A., Postlethwait, J., Miller, C.T., Crump, J.G. (2016) Ancient origin of lubricated joints in bony vertebrates. eLIFE. 5
Jiang, Y., Yan, Y., Wang, X., Zhu, G., Xu, Y.J. (2016) Hepcidin inhibition on the effect of osteogenesis in zebrafish. Biochemical and Biophysical Research Communications. 476(1):1-6
Ding, H.L., Hooper, J.E., Batzel, P., Eames, B.F., Postlethwait, J.H., Artinger, K.B., Clouthier, D.E. (2016) MicroRNA Profiling during Craniofacial Development: Potential Roles for Mir23b and Mir133b. Frontiers in Physiology. 7:281
Petersen, A.M., Earp, N.C., Redmond, M.E., Postlethwait, J.H., von Hippel, F.A., Buck, C.L., Cresko, W.A. (2016) Perchlorate Exposure Reduces Primordial Germ Cell Number in Female Threespine Stickleback. PLoS One. 11:e0157792
Braasch, I., Gehrke, A.R., Smith, J.J., Kawasaki, K., Manousaki, T., Pasquier, J., Amores, A., Desvignes, T., Batzel, P., Catchen, J., Berlin, A.M., Campbell, M.S., Barrell, D., Martin, K.J., Mulley, J.F., Ravi, V., Lee, A.P., Nakamura, T., Chalopin, D., Fan, S., Wcisel, D., Cañestro, C., Sydes, J., Beaudry, F.E., Sun, Y., Hertel, J., Beam, M.J., Fasold, M., Ishiyama, M., Johnson, J., Kehr, S., Lara, M., Letaw, J.H., Litman, G.W., Litman, R.T., Mikami, M., Ota, T., Saha, N.R., Williams, L., Stadler, P.F., Wang, H., Taylor, J.S., Fontenot, Q., Ferrara, A., Searle, S.M., Aken, B., Yandell, M., Schneider, I., Yoder, J.A., Volff, J.N., Meyer, A., Amemiya, C.T., Venkatesh, B., Holland, P.W., Guiguen, Y., Bobe, J., Shubin, N.H., Di Palma, F., Alföldi, J., Lindblad-Toh, K., Postlethwait, J.H. (2016) The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nature Genetics. 48(4):427-37
Lin, J.C., Hu, S., Ho, P.H., Hsu, H.J., Postlethwait, J., Chung, B.C. (2016) Corrigendum. Two zebrafish hsd3b genes are distinct in function, expression and evolution. Endocrinology. 157:978
Tallafuss, A., Kelly, M., Gay, L., Gibson, D., Batzel, P., Karfilis, K.V., Eisen, J., Stankunas, K., Postlethwait, J.H., Washbourne, P. (2015) Transcriptomes of post-mitotic neurons identify the usage of alternative pathways during adult and embryonic neuronal differentiation. BMC Genomics. 16:1100
Askary, A., Mork, L., Paul, S., He, X., Izuhara, A.K., Gopalakrishnan, S., Ichida, J.K., McMahon, A.P., Dabizljevic, S., Dale, R., Mariani, F.V., Crump, J.G. (2015) Iroquois Proteins Promote Skeletal Joint Formation by Maintaining Chondrocytes in an Immature State. Developmental Cell. 35:358-65
Desvignes, T., Batzel, P., Berezikov, E., Eilbeck, K., Eppig, J.T., McAndrews, M.S., Singer, A., Postlethwait, J.H. (2015) miRNA Nomenclature: A View Incorporating Genetic Origins, Biosynthetic Pathways, and Sequence Variants. Trends in genetics : TIG. 31:613-26
Lin, J.C., Hu, S., Ho, P.H., Hsu, H.J., Postlethwait, J., Chung, B.C. (2015) Two zebrafish hsd3b genes are distinct in function, expression and evolution. Endocrinology. 156(8):2854-62
Postlethwait, J.H. (2015) "Wrecks of Ancient Life": Genetic Variants Vetted by Natural Selection. Genetics. 200:675-8
Braasch, I., Peterson, S.M., Desvignes, T., McCluskey, B.M., Batzel, P., Postlethwait, J.H. (2015) A new model army: Emerging fish models to study the genomics of vertebrate Evo-Devo. Journal of experimental zoology. Part B, Molecular and developmental evolution. 324(4):316-41
McCluskey, B.M., Postlethwait, J.H. (2015) Phylogeny of zebrafish, a 'model species', within Danio, a 'model genus'. Mol. Biol. Evol.. 32(3):635-52
Huang, J., Zhong, Z., Wang, M., Chen, X., Tan, Y., Zhang, S., He, W., He, X., Huang, G., Lu, H., Wu, P., Che, Y., Yan, Y.L., Postlethwait, J.H., Chen, W., Wang, H. (2015) Circadian modulation of dopamine levels and dopaminergic neuron development contributes to attention deficiency and hyperactive behavior. The Journal of neuroscience : the official journal of the Society for Neuroscience. 35:2572-87
Liu, C., Hu, J., Qu, C., Wang, L., Huang, G., Niu, P., Zhong, Z., Hong, F., Wang, G., Postlethwait, J.H., Wang, H. (2015) Molecular evolution and functional divergence of zebrafish (Danio rerio) cryptochrome genes. Scientific Reports. 5:8113
Gehrke, A.R., Schneider, I., de la Calle-Mustienes, E., Tena, J.J., Gomez-Marin, C., Chandran, M., Nakamura, T., Braasch, I., Postlethwait, J.H., Gómez-Skarmeta, J.L., Shubin, N.H. (2015) Deep conservation of wrist and digit enhancers in fish. Proceedings of the National Academy of Sciences of the United States of America. 112(3):803-8
Wilson, C.A., High, S.K., McCluskey, B.M., Amores, A., Yan, Y.L., Titus, T.A., Anderson, J.L., Batzel, P., Carvan, M.J., Schartl, M., Postlethwait, J.H. (2014) Wild Sex in Zebrafish: Loss of the Natural Sex Determinant in Domesticated Strains. Genetics. 198(3):1291-308
Ito-Amano, M., Nakamura, Y., Morisaki, M., He, X., Hayashi, M., Watanapokasin, R., Kato, H. (2014) Temporal and spatial expression patterns of bone morphogenetic protein 3 in developing zebrafish. The open rheumatology journal. 8:69-72
Desvignes, T., Beam, M.J., Batzel, P., Sydes, J., Postlethwait, J.H. (2014) Expanding the annotation of zebrafish microRNAs based on small RNA sequencing. Gene. 546(2):386-9
Amores, A., Catchen, J., Nanda, I., Warren, W., Walter, R., Schartl, M., Postlethwait, J.H. (2014) A RAD-tag Genetic Map for the Platyfish (Xiphophorus maculatus) Reveals Mechanisms of Karyotype Evolution Among Teleost Fish. Genetics. 197(2):625-41
Braasch, I., Guiguen, Y., Loker, R., Letaw, J.H., Ferrara, A., Bobe, J., and Postlethwait, J.H. (2014) Connectivity of vertebrate genomes: Paired-related homeobox (Prrx) genes in spotted gar, basal teleosts, and tetrapods. Comparative biochemistry and physiology. Toxicology & pharmacology : CBP. 163:24-36
Chen, B., Yan, Y.L., Liu, C., Bo, L., Li, G.F., Wang, H., and Xu, Y.J. (2014) Therapeutic effect of deferoxamine on iron overload-induced inhibition of osteogenesis in a zebrafish model. Calcified tissue international. 94(3):353-360
Zigman, M., Laumann-Lipp, N., Titus, T., Postlethwait, J., and Moens, C.B. (2014) Hoxb1b controls oriented cell division, cell shape and microtubule dynamics in neural tube morphogenesis. Development (Cambridge, England). 141(3):639-649
Desvignes, T., Contreras, A., Postlethwait, J.H. (2014) Evolution of the miR199-214 cluster and vertebrate skeletal development. RNA Biology. 11(4):281-94
Korenbrot, J.I., Mehta, M., Tserentsoodol, N., Postlethwait, J.H., and Rebrik, T.I. (2013) EML1 (CNG-Modulin) Controls Light Sensitivity in Darkness and under Continuous Illumination in Zebrafish Retinal Cone Photoreceptors. The Journal of neuroscience : the official journal of the Society for Neuroscience. 33(45):17763-17776
Rodríguez-Marí, A., Cañestro, C., Bremiller, R.A., Catchen, J.M., Yan, Y.L., and Postlethwait, J.H. (2013) Retinoic Acid metabolic genes, meiosis, and gonadal sex differentiation in zebrafish. PLoS One. 8(9):e73951
Zhang, G., Hoersch, S., Amsterdam, A., Whittaker, C.A., Beert, E., Catchen, J.M., Farrington, S., Postlethwait, J.H., Legius, E., Hopkins, N., and Lees, J.A. (2013) Comparative oncogenomic analysis of copy number alterations in human and zebrafish tumors enables cancer driver discovery. PLoS Genetics. 9(8):e1003734
Meng, F., Braasch, I., Phillips, J.B., Lin, X., Titus, T., Zhang, C., and Postlethwait, J.H. (2013) Evolution of the eye transcriptome under constant darkness in Sinocyclocheilus cavefish. Mol. Biol. Evol.. 30(7):1527-1543
Schartl, M., Walter, R.B., Shen, Y., Garcia, T., Catchen, J., Amores, A., Braasch, I., Chalopin, D., Volff, J.N., Lesch, K.P., Bisazza, A., Minx, P., Hillier, L., Wilson, R.K., Fuerstenberg, S., Boore, J., Searle, S., Postlethwait, J.H., and Warren, W.C. (2013) The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits. Nature Genetics. 45(5):567-572
Howe, K., Clark, M.D., Torroja, C.F., Torrance, J., Berthelot, C., Muffato, M., Collins, J.E., Humphray, S., McLaren, K., Matthews, L., McLaren, S., Sealy, I., Caccamo, M., Churcher, C., Scott, C., Barrett, J.C., Koch, R., Rauch, G.J., White, S., Chow, W., Kilian, B., Quintais, L.T., Guerra-Assunção, J.A., Zhou, Y., Gu, Y., Yen, J., Vogel, J.H., Eyre, T., Redmond, S., Banerjee, R., Chi, J., Fu, B., Langley, E., Maguire, S.F., Laird, G.K., Lloyd, D., Kenyon, E., Donaldson, S., Sehra, H., Almeida-King, J., Loveland, J., Trevanion, S., Jones, M., Quail, M., Willey, D., Hunt, A., Burton, J., Sims, S., McLay, K., Plumb, B., Davis, J., Clee, C., Oliver, K., Clark, R., Riddle, C., Eliott, D., Threadgold, G., Harden, G., Ware, D., Mortimer, B., Kerry, G., Heath, P., Phillimore, B., Tracey, A., Corby, N., Dunn, M., Johnson, C., Wood, J., Clark, S., Pelan, S., Griffiths, G., Smith, M., Glithero, R., Howden, P., Barker, N., Stevens, C., Harley, J., Holt, K., Panagiotidis, G., Lovell, J., Beasley, H., Henderson, C., Gordon, D., Auger, K., Wright, D., Collins, J., Raisen, C., Dyer, L., Leung, K., Robertson, L., Ambridge, K., Leongamornlert, D., McGuire, S., Gilderthorp, R., Griffiths, C., Manthravadi, D., Nichol, S., Barker, G., Whitehead, S., Kay, M., Brown, J., Murnane, C., Gray, E., Humphries, M., Sycamore, N., Barker, D., Saunders, D., Wallis, J., Babbage, A., Hammond, S., Mashreghi-Mohammadi, M., Barr, L., Martin, S., Wray, P., Ellington, A., Matthews, N., Ellwood, M., Woodmansey, R., Clark, G., Cooper, J., Tromans, A., Grafham, D., Skuce, C., Pandian, R., Andrews, R., Harrison, E., Kimberley, A., Garnett, J., Fosker, N., Hall, R., Garner, P., Kelly, D., Bird, C., Palmer, S., Gehring, I., Berger, A., Dooley, C.M., Ersan-Ürün, Z., Eser, C., Geiger, H., Geisler, M., Karotki, L., Kirn, A., Konantz, J., Konantz, M., Oberländer, M., Rudolph-Geiger, S., Teucke, M., Osoegawa, K., Zhu, B., Rapp, A., Widaa, S., Langford, C., Yang, F., Carter, N.P., Harrow, J., Ning, Z., Herrero, J., Searle, S.M., Enright, A., Geisler, R., Plasterk, R.H., Lee, C., Westerfield, M., de Jong, P.J., Zon, L.I., Postlethwait, J.H., Nüsslein-Volhard, C., Hubbard, T.J., Crollius, H.R., Rogers, J., and Stemple, D.L. (2013) The zebrafish reference genome sequence and its relationship to the human genome. Nature. 496:498-503
Amemiya, C.T., Alfoldi, J., Lee, A.P., Fan, S., Philippe, H., MacCallum, I., Braasch, I., Manousaki, T., Schneider, I., Rohner, N., Organ, C., Chalopin, D., Smith, J.J., Robinson, M., Dorrington, R.A., Gerdol, M., Aken, B., Biscotti, M.A., Barucca, M., Baurain, D., Berlin, A.M., Blatch, G.L., Buonocore, F., Burmester, T., Campbell, M.S., Canapa, A., Cannon, J.P., Christoffels, A., de Moro, G., Edkins, A.L., Fan, L., Fausto, A.M., Feiner, N., Forconi, M., Gamieldien, J., Gnerre, S., Gnirke, A., Goldstone, J.V., Haerty, W., Hahn, M.E., Hesse, U., Hoffmann, S., Johnson, J., Karchner, S.I., Karaku, S., Lara, M., Levin, J.Z., Litman, G.W., Mauceli, E., Miyake, T., Mueller, M.G., Nelson, D.R., Nitsche, A., Olmo, E., Ota, T., Pallavicini, A., Panji, S., Picone, B., Ponting, C.P., Prohaska, S.J., Przybylski, D., Saha, N.R., Ravi, V., Ribeiro, F.J., Sauka-Spengler, T., Scapigliati, G., Searle, S.M.J., Sharpe, T., Simakov, O., Stadler, P.F., Stegeman, J.J., Sumiyama, K., Tabbaa, D., Tafer, H., Turner-Maier, J., van Heusden, P., White, S., Williams, L., Yandell, M., Brinkmann, H., Volff, J.N., Tabin, C.J., Shubin, N., Schartl, M., Jaffe, D.B., Postlethwait, J.H., Venkatesh, B., Palma, F.D., Lander, E.S., Meyer, A., and Lindblad-Toh, K. (2013) The African coelacanth genome provides insights into tetrapod evolution. Nature. 496:311-316
Yang, Y., Wandler, A.M., Postlethwait, J.H., and Guillemin, K. (2012) Dynamic Evolution of the LPS-Detoxifying Enzyme Intestinal Alkaline Phosphatase in Zebrafish and Other Vertebrates. Frontiers in Molecular Innate Immunity. 3:314
Yan, Y.L., Bhattacharya, P., He, X., Ponugoti, B., Marquardt, B., Layman, J., Grunloh, M., Postlethwait, J.H., and Rubin, D. (2012) Duplicated zebrafish co-orthologs of parathyroid hormone-related peptide (PTHrP, Pthlh) play different roles in craniofacial skeletogenesis. The Journal of endocrinology. 214(3):421-435
Talbot, J.C., Walker, M.B., Carney, T.J., Huycke, T.R., Yan, Y.L., Bremiller, R.A., Gai, L., Delaurier, A., Postlethwait, J.H., Hammerschmidt, M., and Kimmel, C.B. (2012) fras1 shapes endodermal pouch 1 and stabilizes zebrafish pharyngeal skeletal development. Development (Cambridge, England). 139(15):2804-2813
Delaurier, A., Nakamura, Y., Braasch, I., Khanna, V., Kato, H., Wakitani, S., Postlethwait, J.H., and Kimmel, C.B. (2012) Histone deacetylase-4 is required during early cranial neural crest development for generation of the zebrafish palatal skeleton. BMC Developmental Biology. 12(1):16
Eames, B.F., Amores, A., Yan, Y.L., and Postlethwait, J.H. (2012) Evolution of the osteoblast: Skeletogenesis in gar and zebrafish. BMC Evolutionary Biology. 12(1):27
Anderson, J.L., Rodriguez-Mari, A., Braasch, I., Amores, A., Hohenlohe, P., Batzel, P., and Postlethwait, J.H. (2012) Multiple Sex-Associated Regions and a Putative Sex Chromosome in Zebrafish Revealed by RAD Mapping and Population Genomics. PLoS One. 7(7):e40701
Nakamura, Y., He, X., Kato, H., Wakitani, S., Kobayashi, T., Watanabe, S., Iida, A., Tahara, H., Warman, M.L., Watanapokasin, R., and Postlethwait, J.H. (2012) Sox9 Is Upstream of MicroRNA-140 in Cartilage. Applied Biochemistry and Biotechnology. 166(1):64-71
Bhattacharya, P., Yan, Y.L., Postlethwait, J., and Rubin, D. (2011) Evolution of the vertebrate pth2 (tip39) gene family and the regulation of PTH type 2 receptor (pth2r) and its endogenous ligand pth2 by hedgehog signaling in zebrafish development. The Journal of endocrinology. 211(2):187-200
Lenhart, K.F., Lin, S.Y., Titus, T.A., Postlethwait, J.H., Burdine, R.D. (2011) Two additional midline barriers function with midline lefty1 expression to maintain asymmetric Nodal signaling during left-right axis specification in zebrafish. Development (Cambridge, England). 138(20):4405-4410
He, X., Yan, Y.L., Eberhart, J.K., Herpin, A., Wagner, T.U., Schartl, M., and Postlethwait, J.H. (2011) miR-196 regulates axial patterning and pectoral appendage initiation. Developmental Biology. 357(2):463-77
Song, H., Yan, Y.L., Titus, T., He, X., and Postlethwait, J.H. (2011) The role of stat1b in zebrafish hematopoiesis. Mechanisms of Development. 128(7-10):442-56
Amores, A., Catchen, J., Ferrara, A., Fontenot, Q., and Postlethwait, J.H. (2011) Genome evolution and meiotic maps by massively parallel DNA sequencing: spotted gar, an outgroup for the teleost genome duplication. Genetics. 188(4):799-808
Catchen, J.M., Amores, A., Hohenlohe, P., Cresko, W., and Postlethwait, J.H. (2011) Stacks: building and genotyping Loci de novo from short-read sequences. G3 (Bethesda). 1(3):171-182
Eames, B.F., Yan, Y.L., Swartz, M.E., Levic, D.S., Knapik, E.W., Postlethwait, J.H., and Kimmel, C.B. (2011) Mutations in fam20b and xylt1 Reveal That Cartilage Matrix Controls Timing of Endochondral Ossification by Inhibiting Chondrocyte Maturation. PLoS Genetics. 7(8):e1002246
Hochheiser, H., Aronow, B.J., Artinger, K., Beaty, T.H., Brinkley, J.F., Chai, Y., Clouthier, D., Cunningham, M.L., Dixon, M., Donahue, L.R., Fraser, S.E., Hallgrimsson, B., Iwata, J., Klein, O., Marazita, M.L., Murray, J.C., Murray, S., de Villena, F.P., Postlethwait, J., Potter, S., Shapiro, L., Spritz, R., Visel, A., Weinberg, S.M., and Trainor, P.A. (2011) The FaceBase Consortium: a comprehensive program to facilitate craniofacial research. Developmental Biology. 355(2):175-182
Braasch, I., and Postlethwait, J.H. (2011) The teleost agouti-related protein 2 gene is an ohnolog gone missing from the tetrapod genome. Proc. Natl. Acad. Sci. USA. 108(13):E47-E48
He, X., Yan, Y.L., Delaurier, A., and Postlethwait, J.H. (2011) Observation of miRNA Gene Expression in Zebrafish Embryos by In Situ Hybridization to MicroRNA Primary Transcripts. Zebrafish. 8(1):1-8
Rodriguez-Mari, A., Wilson, C., Titus, T.A., Cañestro, C., Bremiller, R.A., Yan, Y.L., Nanda, I., Johnston, A., Kanki, J.P., Gray, E.M., He, X., Spitsbergen, J., Schindler, D., and Postlethwait, J.H. (2011) Roles of brca2 (fancd1) in Oocyte Nuclear Architecture, Gametogenesis, Gonad Tumors, and Genome Stability in Zebrafish. PLoS Genetics. 7(3):e1001357
Catchen, J.M., Braasch, I., and Postlethwait, J.H. (2011) Conserved synteny and the zebrafish genome. Meth. Cell. Biol.. 104:259-285
Clark, M.D., Guryev, V., Bruijn, E., Nijman, I.J., Tada, M., Wilson, C., Deloukas, P., Postlethwait, J.H., Cuppen, E., and Stemple, D.L. (2011) Single nucleotide polymorphism (SNP) panels for rapid positional cloning in zebrafish. Meth. Cell. Biol.. 104:219-235
Nakamura, Y., Yamamoto, K., He, X., Otsuki, B., Kim, Y., Murao, H., Soeda, T., Tsumaki, N., Deng, J.M., Zhang, Z., Behringer, R.R., Crombrugghe, B., Postlethwait, J.H., Warman, M.L., Nakamura, T., and Akiyama, H. (2011) Wwp2 is essential for palatogenesis mediated by the interaction between Sox9 and mediator subunit 25. Nature communications. 2:251
Rodriguez-Mari, A., and Postlethwait, J.H. (2011) The Role of Fanconi Anemia/BRCA Genes in Zebrafish Sex Determination. Meth. Cell. Biol.. 105:461-490
Delaurier, A., Eames, B.F., Blanco-Sánchez, B., Peng, G., He, X., Swartz, M.E., Ullmann, B., Westerfield, M., and Kimmel, C.B. (2010) Zebrafish sp7:EGFP: A transgenic for studying otic vesicle formation, skeletogenesis, and bone regeneration. Genesis (New York, N.Y. : 2000). 48(8):505-511
Rodriguez-Mari, A., Cañestro, C., Bremiller, R.A., Nguyen-Johnson, A., Asakawa, K., Kawakami, K., and Postlethwait, J.H. (2010) Sex Reversal in Zebrafish fancl Mutants Is Caused by Tp53-Mediated Germ Cell Apoptosis. PLoS Genetics. 6(7):e1001034
Eames, B.F., Singer, A., Smith, G.A., Wood, Z.A., Yan, Y.L., He, X., Polizzi, S.J., Catchen, J.M., Rodriguez-Mari, A., Linbo, T., Raible, D.W., and Postlethwait, J.H. (2010) UDP xylose synthase 1 is required for morphogenesis and histogenesis of the craniofacial skeleton. Developmental Biology. 341(2):400-415
Jovelin, R., Yan, Y.L., He, X., Catchen, J., Amores, A., Canestro, C., Yokoi, H., and Postlethwait, J.H. (2010) Evolution of developmental regulation in the vertebrate FgfD subfamily. Journal of experimental zoology. Part B, Molecular and developmental evolution. 314(1):33-56
Albertson, R.C., Yan, Y.L., Titus, T.A., Pisano, E., Vacchi, M., Yelick, P.C., Detrich, H.W. 3rd, and Postlethwait, J.H. (2010) Molecular pedomorphism underlies craniofacial skeletal evolution in Antarctic notothenioid fishes. BMC Evolutionary Biology. 10:4
Esain, V., Postlethwait, J.H., Charnay, P., and Ghislain, J. (2010) FGF-receptor signalling controls neural cell diversity in the zebrafish hindbrain by regulating olig2 and sox9. Development (Cambridge, England). 137(1):33-42
Sullivan, C., Charette, J., Catchen, J., Lage, C.R., Giasson, G., Postlethwait, J.H., Millard, P.J., and Kim, C.H. (2009) The Gene History of Zebrafish tlr4a and tlr4b Is Predictive of Their Divergent Functions. Journal of immunology (Baltimore, Md. : 1950). 183(9):5896-5908
Catchen, J.M., Conery, J.S., and Postlethwait, J.H. (2009) Automated identification of conserved synteny after whole-genome duplication. Genome research. 19(8):1497-1505
Titus, T.A., Yan, Y.L., Wilson, C., Starks, A.M., Frohnmayer, J.D., Canestro, C., Rodriguez-Mari, A., He, X., and Postlethwait, J.H. (2009) The Fanconi anemia/BRCA gene network in zebrafish: Embryonic expression and comparative genomics. Mutation research. 668(1-2):117-132
Cañestro, C., Catchen, J.M., Rodriguez-Mari, A., Yokoi, H., and Postlethwait, J.H. (2009) Consequences of lineage-specific gene loss on functional evolution of surviving paralogs: ALDH1A and retinoic acid signaling in vertebrate genomes. PLoS Genetics. 5(5):e1000496
Yokoi, H., Yan, Y.L., Miller, M.R., Bremiller, R.A., Catchen, J.M., Johnson, E.A., and Postlethwait, J.H. (2009) Expression profiling of zebrafish sox9 mutants reveals that Sox9 is required for retinal differentiation. Developmental Biology. 329(1):1-15
He, X., Eberhart, J.K., and Postlethwait, J.H. (2009) MicroRNAs and micromanaging the skeleton in disease, development and evolution. Journal of Cellular and Molecular Medicine. 13(4):606-618
Nakamura, Y., He, X., Kobayashi, T., Yan, Y.L., Postlethwait, J.H., and Warman, M.L. (2008) Unique roles of microRNA140 and its host gene WWP2 in cartilage biology. Journal of musculoskeletal & neuronal interactions. 8(4):321-322
Rotllant, J., Liu, D., Yan, Y.L., Postlethwait, J.H., Westerfield, M., and Du, S.J. (2008) Sparc (Osteonectin) functions in morphogenesis of the pharyngeal skeleton and inner ear. Matrix biology : journal of the International Society for Matrix Biology. 27(6):561-572
Eberhart, J.K., He, X., Swartz, M.E., Yan, Y.L., Song, H., Boling, T.C., Kunerth, A.K., Walker, M.B., Kimmel, C.B., and Postlethwait, J.H. (2008) MicroRNA Mirn140 modulates Pdgf signaling during palatogenesis. Nature Genetics. 40(3):290-298
Catchen, J.M., Conery, J.S., and Postlethwait, J.H. (2008) Inferring ancestral gene order. Meth. Mol. Biol.. 452:365-383
Pietri, T., Easley-Neal, C., Wilson, C., and Washbourne, P. (2008) Six cadm/synCAM genes are expressed in the nervous system of developing zebrafish. Developmental dynamics : an official publication of the American Association of Anatomists. 237(1):233-246
Jovelin, R., He, X., Amores, A., Yan, Y.L., Shi, R., Qin, B., Roe, B., Cresko, W.A., and Postlethwait, J.H. (2007) Duplication and divergence of fgf8 functions in teleost development and evolution. Journal of experimental zoology. Part B, Molecular and developmental evolution. 308B(6):730-743
Postlethwait, J.H. (2007) The zebrafish genome in context: ohnologs gone missing. Journal of experimental zoology. Part B, Molecular and developmental evolution. 308(5):563-577
Sakata, S.I., Yan, Y., Satou, Y., Momoi, A., Ngo-Hazelett, P., Nozaki, M., Furutani-Seiki, M., Postlethwait, J.H., Yonehara, S., and Sakamaki, K. (2007) Conserved function of caspase-8 in apoptosis during bony fish evolution. Gene. 396(1):134-148
Sullivan, C., Postlethwait, J.H., Lage, C.R., Millard, P.J., and Kim, C.H. (2007) Evidence for Evolving Toll-IL-1 Receptor-Containing Adaptor Molecule Function in Vertebrates. Journal of immunology (Baltimore, Md. : 1950). 178(7):4517-4527
Miller, M.R., Atwood, T.S., Eames, B.F., Eberhart, J.K., Yan, Y.L., Postlethwait, J.H., and Johnson, E.A. (2007) RAD marker microarrays enable rapid mapping of zebrafish mutations. Genome biology. 8(6):R105
Nolte, C., Rastegar, M., Amores, A., Bouchard, M., Grote, D., Maas, R., Kovacs, E.N., Postlethwait, J., Rambaldi, I., Rowan, S., Yan, Y.L., Zhang, F., and Featherstone, M. (2006) Stereospecificity and PAX6 function direct Hoxd4 neural enhancer activity along the antero-posterior axis. Developmental Biology. 299(2):582-593
Cañestro, C., Postlethwait, J.H., Gonzàlez-Duarte, R., and Albalat, R. (2006) Is retinoic acid genetic machinery a chordate innovation?. Evolution & development. 8(5):394-406
Hale, L.A., Tallafuss, A., Yan, Y.L., Dudley, L., Eisen, J.S., and Postlethwait, J.H. (2006) Characterization of the retinoic acid receptor genes raraa, rarab and rarg during zebrafish development. Gene Expression Patterns. 6(5):546-555
Tallafuss, A., Hale, L.A., Yan, Y.L., Dudley, L., Eisen, J.S., and Postlethwait, J.H. (2006) Characterization of retinoid-X receptor genes rxra, rxrba, rxrbb and rxrg during zebrafish development. Gene Expression Patterns. 6(5):556-565
Bromee, T., Venkatesh, B., Brenner, S., Postlethwait, J.H., Yan, Y.L., and Larhammar, D. (2006) Uneven evolutionary rates of bradykinin B1 and B2 receptors in vertebrate lineages. Gene. 373:100-108
Titus, T.A., Selvig, D.R., Qin, B., Wilson, C., Starks, A.M., Roe, B.A., and Postlethwait, J.H. (2006) The Fanconi anemia gene network is conserved from zebrafish to human. Gene. 371(2):211-223
Phillips, R.B., Amores, A., Morasch, M.R., Wilson, C., and Postlethwait, J.H. (2006) Assignment of zebrafish genetic linkage groups to chromosomes. Cytogenetic and genome research. 114(2):155-162
Postlethwait, J.H. (2006) The Zebrafish Genome: A Review and msx Gene Case Study. Genome dynamics. 2:183-197
Woods, I.G., Wilson, C., Friedlander, B., Chang, P., Reyes, D.K., Nix, R., Kelly, P.D., Chu, F., Postlethwait, J.H., and Talbot, W.S. (2005) The zebrafish gene map defines ancestral vertebrate chromosomes. Genome research. 15(9):1307-1314
Albertson, R.C., Payne-Ferreira, T.L., Postlethwait, J., and Yelick, P.C. (2005) Zebrafish acvr2a and acvr2b exhibit distinct roles in craniofacial development. Developmental dynamics : an official publication of the American Association of Anatomists. 233(4):1405-1418
Kuo, M.W., Postlethwait, J., Lee, W.C., Lou, S.W., Chan, W.K., and Chung, B.C. (2005) Gene duplication, gene loss and evolution of expression domains in the vertebrate nuclear receptor NR5A (Ftz-F1) family. The Biochemical journal. 389(Pt 1):19-26
Lagerstrom, M.C., Fredriksson, R., Bjarnadottir, T.K., Fridmanis, D., Holmquist, T., Andersson, J., Yan, Y.L., Raudsepp, T., Zoorob, R., Kukkonen, J.P., Lundin, L.G., Klovins, J., Chowdhary, B.P., Postlethwait, J.H., and Schioth, H.B. (2005) Origin of the prolactin-releasing hormone (PRLH) receptors: evidence of coevolution between PRLH and a redundant neuropeptide Y receptor during vertebrate evolution. Genomics. 85(6):688-703
Rodríguez-Marí, A., Yan, Y.L., Bremiller, R.A., Wilson, C., Cañestro, C., and Postlethwait, J.H. (2005) Characterization and expression pattern of zebrafish anti-Müllerian hormone (amh) relative to sox9a, sox9b, and cyp19a1a, during gonad development. Gene Expression Patterns. 5(5):655-667
Gloriam, D.E., Bjarnadóttir, T.K., Yan, Y.L., Postlethwait, J.H., Schiöth, H.B., and Fredriksson, R. (2005) The repertoire of trace amine G-protein-coupled receptors: large expansion in zebrafish. Molecular phylogenetics and evolution. 35(2):470-482
Yan, Y.L., Willoughby, J., Liu, D., Crump, J.G., Wilson, C., Miller, C.T., Singer, A., Kimmel, C., Westerfield, M., and Postlethwait, J.H. (2005) A pair of Sox: distinct and overlapping functions of zebrafish sox9 co-orthologs in craniofacial and pectoral fin development. Development (Cambridge, England). 132(5):1069-1083
Kuo, M.W., Lou, S.W., Postlethwait, J., and Chung, B.C. (2005) Chromosomal Organization, Evolutionary Relationship, and Expression of Zebrafish GnRH Family Members. Journal of Biomedical Science. 12(4):629-639
Papasani, M.R., Gensure, R.C., Yan, Y.L., Gunes, Y., Postlethwait, J.H., Ponugoti, B., John, M.R., Jüppner, H., and Rubin, D.A. (2004) Identification and characterization of the zebrafish and fugu genes encoding tuberoinfundibular peptide 39 (TIP39). Endocrinology. 145(11):5294-5304
Postlethwait, J.H. (2004) Evolution of the Zebrafish Genome. In Fish Development and Genetics - the Zebrafish and Medaka Models. Gong, Z. and Korh, V., Eds. Book series of "Molecular Aspects of Fish and Marine Biology". 2
Flores, M.V., Tsang, V.W., Hu, W., Kalev-Zylinska, M., Postlethwait, J., Crosier, P., Crosier, K., and Fisher, S. (2004) Duplicate zebrafish runx2 orthologues are expressed in developing skeletal elements. Gene Expression Patterns. 4(5):573-581
Cao, Y., Zhao, J., Sun, Z., Zhao, Z., Postlethwait, J., and Meng, A. (2004) fgf17b, a novel member of Fgf family, helps patterning zebrafish embryos. Developmental Biology. 271(1):130-143
Naruse, K., Tanaka, M., Mita, K., Shima, A., Postlethwait, J., and Mitani, H. (2004) A Medaka Gene Map: The Trace of Ancestral Vertebrate Proto-Chromosomes Revealed by Comparative Gene Mapping. Genome research. 14(5):820-828
Amores, A., Suzuki, T., Yan, Y.-L., Pomeroy, J., Singer, A., Amemiya, C., and Postlethwait, J.H. (2004) Developmental roles of pufferfish hox clusters and genome evolution in ray-fin fish. Genome research. 14(1):1-10
Dodou, E., Barald, K.F., and Postlethwait, J.H. (2004) Ventralized Zebrafish Embryo Rescue by Overexpression of Zic2a. Zebrafish. 1(3):239-256
Fredriksson, R., Larson E.T., Yan, Y.-L., Postlethwait, J.H., and Larhammar, D. (2004) Novel neuropeptide Y Y2-like receptor subtype in zebrafish and frogs supports early vertebrate chromosome duplications. Journal of molecular evolution. 58(1):106-114
Postlethwait, J., Ruotti, V., Carvan, M.J., and Tonellato, P.J. (2004) Automated analysis of conserved syntenies for the zebrafish genome. The Zebrafish: Genetics, Genomics and Informatics, 2nd ed., Methods Cell Biol.. 77:255-271
Ruuskanen, J., Xhaard, H., Marjamäki, A., Salaneck, E., Salminen, T., Yan, Y.-L., Postlethwait, J.H., Johnson, M.S., Larhammar, D., and Scheinin, M. (2004) Identification of duplicated fourth {alpha}2-adrenergic receptor subtype by cloning and mapping of five receptor genes in zebrafish. Mol. Biol. Evol.. 10:14-28
Zhao, J., Cao, Y., Zhao, C., Postlethwait, J., and Meng, A. (2003) An SP1-like transcription factor Spr2 acts downstream of Fgf signaling to mediate mesoderm induction. The EMBO journal. 22(22):6078-6088
Cresko, W.A., Yan, Y.L., Baltrus, D.A., Amores, A., Singer, A., Rodriguez-Mari, A., and Postlethwait, J.H. (2003) Genome duplication, subfunction partitioning, and lineage divergence: Sox9 in stickleback and zebrafish. Developmental dynamics : an official publication of the American Association of Anatomists. 228(3):480-489
Kalev-Zylinska, M.L., Horsfield, J.A., Flores, M.V., Postlethwait, J.H., Chau, J.Y., Cattin, P.M., Vitas, M.R., Crosier, P.S., and Crosier, K.E. (2003) Runx3 is required for hematopoietic development in zebrafish. Developmental dynamics : an official publication of the American Association of Anatomists. 228(3):323-336
Rhinn, M., Lun, K., Amores, A., Yan, Y.-L., Postlethwait, J.H., and Brand, M. (2003) Cloning, expression and relationship of zebrafish gbx1 and gbx2 genes to Fgf signaling. Mechanisms of Development. 120(8):919-936
Zhao, C.-T., Shi, K.-H., Su, Y., Liang, L.-Y., Yan, Y.-L, Postlethwait, J., and Meng, A.-M. (2003) Two variants of zebrafish p100 are expressed during embryogenesis and regulated by Nodal signaling. FEBS letters. 543(1-3):190-195
Liu, D., Chu, H., Maves, L., Yan, Y.-L., Morcos, P.A., Postlethwait, J.H., and Westerfield, M. (2003) Fgf3 and Fgf8 dependent and independent transcription factors are required for otic placode specification. Development (Cambridge, England). 130(10):2213-2224
Paw, B.H., Davidson, A.J., Zhou, Y., Li, R., Pratt, S.J., Lee, C., Trede, N.S., Brownlie, A., Donovan, A., Liao, E.C., Ziai, J.M., Drejer, A.H., Guo, W., Kim, C.H., Gwynn, B., Peters, L.L., Chernova, M.N., Alper, S.L., Zapata, A., Wickramasinghe, S.N., Lee, M.J., Lux, S.E., Fritz, A., Postlethwait, J.H., and Zon, L.I. (2003) Cell-specific mitotic defect and dyserythropoiesis associated with erythroid band 3 deficiency. Nature Genetics. 34(1):59-64
Ghanem, N., Jarinova, O., Amores, A., Long, Q., Hatch, G., Park, B.K., Rubenstein, J.L., and Ekker, M. (2003) Regulatory roles of conserved intergenic domains in vertebrate dlx bigene clusters. Genome research. 13(4):533-543
Cañestro, C., Godoy, L., González-Duarte, and Albalat, R. (2003) Comparative expression analysis of Adh3 during arthropod, urochordate, cephalochordate, and vertebrate development challenges its predicted housekeeping role. Evolution & development. 5(2):157-162
Nolte, C., Amores, A., Nagy Kovacs, E., Postlethwait, J., and Featherstone, M. (2003) The role of a retinoic acid response element in establishing the anterior neural expression border of Hoxd4 transgenes. Mechanisms of Development. 120(3):325-335
Masumoto, J., Zhou, W., Chen, F.F., Su, F., Kuwada, J.Y., Hidaka, E., Katsuyama, T., Sagara, J., Taniguchi, S., Ngo-Hazelett, P., Postlethwait, J.H., Nuñez, G., and Inohara, N. (2003) Caspy: A Zebrafish caspase activated by ASC oligomerization required for pharyngeal arch development. The Journal of biological chemistry. 278(6):4268-4276
Yan, Y.-L., Miller, C.T., Nissen, R.M., Singer, A., Liu, D., Kirn, A., Draper, B., Willoughby, J., Morcos, P.A., Amsterdam, A., Chung, B.-C., Westerfield, M., Haffter, P., Hopkins, N., Kimmel, C., and Postlethwait, J.H. (2002) A zebrafish sox9 gene required for cartilage morphogenesis. Development (Cambridge, England). 129(21):5065-5079
Pratt, S.J., Drejer, A., Foott, H., Barut, B., Brownlie, A., Postlethwait, J., Kato, Y., Yamamoto, M., and Zon, L.I. (2002) Isolation and characterization of zebrafish NFE2. Physiological Genomics. 11(2):91-98
Canfield, V.A., Loppin, B., Thisse, B., Thisse, C., Postlethwait, J.H., Mohideen, A.P.K., Rajarao, S.J.R., and Levenson, R. (2002) Na,K-ATPase alpha and beta subunit genes exhibit unique expression patterns during zebrafish embryogenesis. Mechanisms of Development. 116(1-2):51-59
Ringholm, A., Fredriksson, R., Poliakova, N., Yan, Y.-L., Postlethwait, J.H., Larhammar, D., and Schiöth, H.B. (2002) One melanocortin 4 and two melanocortin 5 receptors from zebrafish show remarkable conservation in structure and pharmacology. Journal of neurochemistry. 82(1):6-18
Dunér, T., Conlon, J.M., Kukkonen, J.P., Akerman, K.E.O., Yan, Y.-L., Postlethwait, J.H., and Larhammar, D. (2002) Cloning, structural characterization and functional expression of a zebrafish bradykinin B2-related receptor. The Biochemical journal. 364(3):817-824
Kalev-Zylinska, M.L., Horsfield, J.A., Flores, M.V.C., Postlethwait, J.H., Vitas, M.R., Baas, A.M., Crosier, P.S., and Crosier, K.E. (2002) Runx1 is required for zebrafish blood and vessel development and expression of a human RUNX1-CBF2T1 transgene advances a model for studies of leukemogenesis. Development (Cambridge, England). 129(8):2015-2030
Rajarao, J.R., Canfield, V.A., Loppin, B., Thisse, B., Thisse, C., Yan, Y.-L., Postlethwait, J.H., and Levenson, R. (2002) Two Na,K-ATPase beta 2 subunit isoforms are differentially expressed within the central nervous system and sensory organs during zebrafish embryogenesis. Developmental dynamics : an official publication of the American Association of Anatomists. 223(2):254-261
Singer, A., Perlman, H., Yan, Y.-L., Walker, C., Corley-Smith, G., Brandhorst, B., and Postlethwait, J. (2002) Sex-specific recombination rates in zebrafish (Danio rerio). Genetics. 160(2):649-657
Willot, V., Mathieu, J., Lu, Y., Schmid, B., Sidi, S., Yan, Y.-L., Postlethwait, J.H., Mullins, M., Rosa, F., and Peyriéras, N. (2002) Cooperative action of ADMP- and BMP-mediated pathways in regulating cell fates in the zebrafish gastrula. Developmental Biology. 241(1):59-78
Henry, C.A., Crawford, B.D., Yan, Y.-L., Postlethwait, J., Cooper, M.S., and Hille, M.B. (2001) Roles for zebrafish focal adhesion kinase in notochord and somite morphogenesis. Developmental Biology. 240(2):474-487
Chiang, E.F.L., Yan, Y.L., Tong, S.K., Hsiao, P.H., Guiguen, Y., Postlethwait, J., and Chung, B.C. (2001) Characterization of duplicated zebrafish cyp19 genes. The Journal of experimental zoology. 290(7):709-714
Crosier, P.S., Bardsley, A., Horsfield, J.A., Krassowska, A.K., Lavallie, E.R., Collins-Racie, L.A., Postlethwait, J.H., Yan, Y.-L., McCoy, J.M., and Crosier, K.E. (2001) In situ hybridization screen in zebrafish for the selection of genes encoding secreted proteins. Developmental dynamics : an official publication of the American Association of Anatomists. 222(4):637-644
Kalev, M.L., Horsfield, J.A., Flores, M.C., Postlethwait, J.H., Vitas, M.R., Baas, A.M., Crosier, P.S., and Crosier, K.E. (2001) Runt family transcription factors are required for zebrafish hematopoiesis, and their function is disrupted by a human RUNX1-CBF2T1 transgene. Blood. 98(11):1892
Oates, A.C., Pratt, S.J., Vail, B., Yan, Y.-L., Ho, R.K., Johnson, S.L., Postlethwait, J.H., and Zon, L.I. (2001) The zebrafish klf gene family. Blood. 98(6):1792-1801
Varga, Z.M., Amores, A., Lewis, K.E., Yan, Y.-L., Postlethwait, J.H., Eisen, J.S., and Westerfield, M. (2001) Zebrafish smoothened functions in ventral neural tube specification and axon tract formation. Development (Cambridge, England). 128(18):3497-3509
Topczewski, J., Sepich, D.S., Myers, D.C., Walker, C., Amores, A., Lele, Z., Hammerschmidt, M., Postlethwait, J., and Solnica-Krezel, L. (2001) The zebrafish glypican Knypek controls cell polarity during gastrulation movements of convergent extension. Developmental Cell. 1(2):251-264
Rajarao, S.J., Canfield, V.A., Mohideen, M.A., Yan, Y.-L., Postlethwait, J.H., Cheng, K.C., and Levenson, R. (2001) The repertoire of Na,K-ATPase alpha and beta subunit genes expressed in the zebrafish, Danio rerio. Genome research. 11(7):1211-1220
Chiang, E.F., Yan, Y.-L., Guiguen, Y., Postlethwait, J., and Chung, B.-C. (2001) Two Cyp19 (P450 aromatase) genes on duplicated zebrafish chromosomes are expressed in ovary or brain. Mol. Biol. Evol.. 18(4):542-550
Chiang, E., Pai, C.-I., Wyatt, M., Yan, Y-L., Postlethwait, J., and Chung, B.-C. (2001) Two sox9 genes on duplicated zebrafish chromosomes: expression of similar transcription activators in distinct sites. Developmental Biology. 229:149-163
Payne, T.L., Postlethwait, J.H., and Yelick, P.C. (2001) Functional characterization and genetic mapping of alk8. Mechanisms of Development. 100(2):275-289
Bertrand, C., Chatonnet, A., Takke, C., Yan, Y.-L., Postlethwait, J., Toutant, J.P., and Cousin, X. (2001) Zebrafish Acetylcholinesterase Is Encoded by a Single Gene Localized on Linkage Group 7: Gene structure and polymorphism; molecular forms and expression pattern during development. The Journal of biological chemistry. 276(1):464-474
Postlethwait, J.H., Woods, I.G., Ngo-Hazelett, P., Yan, Y.-L., Kelly, P.D., Chu, F., Huang, H., Hill-Force, A., and Talbot, W.S. (2000) Zebrafish comparative genomics and the origins of vertebrate chromosomes. Genome research. 10(12):1890-1902
Woods, I.G., Kelly, P.D., Chu, F., Ngo-Hazelett, P., Yan, Y.-L., Huang, H., Postlethwait, J.H., and Talbot, W.S. (2000) A comparative map of the zebrafish genome. Genome research. 10(12):1903-1914
Liao, W., Ho, C.Y., Yan, Y.L., Postlethwait, J., and Stainier, D.Y.R. (2000) Hhex and Scl function in parallel to regulate early endothelial and blood differentiation in zebrafish. Development (Cambridge, England). 127(20):4303-4313
Söderberg, C., Wraith, A., Ringvall, M., Yan, Y.-L., Postlethwait, J.H., Brodin, L., and Larhammar, D. (2000) Zebrafish genes for neuropeptide Y and peptide YY reveal origin by chromosome duplication from an ancestral gene linked to the homeobox cluster. Journal of neurochemistry. 75(3):908-918
Kelly, P.D., Chu, F., Woods, I.G., Ngo-Hazelett, P., Cardozo, T., Huang, H., Kimm, F., Liao, L., Yan, Y.L., Zhou, Y., Johnson, S.L., Abagyan, R., Schier, A.F., Postlethwait, J.H., and Talbot, W.S. (2000) Genetic linkage mapping of zebrafish genes and ESTs. Genome research. 10(4):558-567
De Martino, S., Yan, Y.-L., Jowett, T., Postlethwait, J.H., Varga, Z.M., Ashworth, A., and Austin, C.A. (2000) Expression of sox11 gene duplicates in zebrafish suggests the reciprocal loss of ancestral gene expression patterns in development. Developmental dynamics : an official publication of the American Association of Anatomists. 217(3):279-292
Brand, M., Lun, K., Reifers, F., Thisse, B., Thisse, C., Amores, A., Yan, Y.-L., and Postlethwait, J. (2000) Subdivision of the early zebrafish neural primordium in response to posteriorizing signals. The European journal of neuroscience. 12:60
O'Brien, S.J., Eisenberg, J.F., Miyamoto, M., Hedges, S.B., Kumar, S., Wilson, D.E., Menotti-Raymond, M., Murphy, W.J., Nash, W.G., Lyons, L.A., Menninger, J.C., Stanyon, R., Wienberg, J., Copeland, N.G., Jenkins, N.A., Gellin, J., Yerle, M., Andersson, L., Womack, J., Broad, T., Postlethwait, J., Serov, O., Bailey, E., James, M.R., and Marshall Graves, J.A. (1999) Genome maps 10. Comparative genomics. Mammalian radiations. Wall chart. Science (New York, N.Y.). 286:463-478
Yan, Y.T., Gritsman, K., Ding, J., Burdine, R.D., Corrales, J.D., Price, S.M., Talbot, W.S., Schier, A.F., and Shen, M.M. (1999) Conserved requirement for EGF-CFC genes in vertebrate left-right axis formation. Genes and Development. 13(19):2527-2537
Hukriede N,A., Joly, L., Tsang, M., Miles, J., Tellis, P., Epstein, J.A., Barbazuk, W.B., Li, F.N., Paw, B., Postlethwait, J.H., Hudson, T.J., Zon, L.I., McPherson, J.D., Chevrette, M., Dawid, I.B., Johnson, S.L., and Ekker, M. (1999) Radiation hybrid mapping of the zebrafish genome. Proc. Natl. Acad. Sci. USA. 96(17):9745-9750
König, C., Yan, Y.L., Postlethwait, J., Wendler, S., and Campos-Ortega, J.A. (1999) A recessive mutation leading to vertebral ankylosis in zebrafish is associated with amino acid alterations in the homologue of the human membrane-associated guanylate kinase DLG3. Mechanisms of Development. 86(1-2):17-28
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Kimmel, C.B., Miller, C.T., Kruse, G., Ullmann, B., BreMiller, R.A., Larison, K.D., and Snyder, H.C. (1998) The shaping of the pharnygeal cartilages during early development of the zebrafish. Developmental Biology. 203:245-263
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