ZFIN ID: ZDB-GENE-980526-306
Gene Name: muscle segment homeobox 3
Gene Symbol: msx3

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Previous Names: msx-c, msxc (1), etID309953.13 (1), msh-C, mshC, zgc:86596 (1)

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(Including Attributions)
Location: Chr: 13 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 68 figures from 43 publications
Directly Submitted Expression Data: 7 figures (19 images) from Thisse et al., 2005 [eu507]
Wild-type Stages, Structures: Gastrula:75%-epiboly (8.0h-9.0h) to Adult (90d-730d, breeding adult)
  anterior crista, anterior crista primordium, ball epidermis, brain dorsal region (all 50) expand
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
mn0245Gt Transgenic Insertion Unknown Unknown DNA
tud18Gt Transgenic Insertion Exon 1 Unknown DNA
  • European Zebrafish Resource Center (EZRC) (order this)
  • Targeting reagents: MO1-msx3 (1)
    PHENOTYPE
    Data: 2 figures from Phillips et al., 2006
    Observed in: cartilage development, cranial cartilage, embryonic viscerocranium morphogenesis, post-vent region
    DISEASE ASSOCIATED WITH msx3 HUMAN ORTHOLOGNo data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process otic placode formation (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001356 (1)
  • InterPro:IPR009057 (1)
  • InterPro:IPR017970 (1)
  • InterPro:IPR020479 (1)
  • PROSITE:PS00027 (1)
  • PROSITE:PS50071 (1)
  • Pfam:PF00046 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA msx3-001 (1) 2028
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYSNo data available
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM msx3
    Tg(msx3:DsRed2)
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    msx3Contained in: [BAC] CH211-217G15 (1) (order this), DKEYP-85D1
    msx3Encodes: [EST] eu507 (1), fc66g03 (1)
    [cDNA] MGC:86596 (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131272 (1) 2029bp
    Genomic GenBank:CR589879 201310bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q6IQV1 (1) 274aa
    Sequence Clusters UniGene:32741 (1)
    Sequence Information (all 23)
    OTHER msx3 GENE PAGES
  • Gene:30526 (1)
  • VEGA:OTTDARG00000001892 (1)
  • Ensembl(GRCz10):ENSDARG00000015674 (1)
  • ORTHOLOGY for msx3 (Chr: 13)
    Species Symbol Chromosome Accession # Evidence
    Mouse Msx3 7
  • MGI:106587
  • Gene:17703
  • Amino acid sequence comparison (2)
    Conserved genome location (synteny) (2)
    Download Curated Orthology
    CITATIONS (93)