Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-980526-306
Gene Name: muscle segment homeobox C
Gene Symbol: msxc
Previous Names: msh-C, mshC, msx-c, etID309953.13 (1), zgc:86596 (1)
Nomenclature History
GENE EXPRESSION
All Expression Data: 60 figures from 36 publications
Directly Submitted Expression Data: 7 figures (19 images) from Thisse et al., 2005 [eu507]
Wild-type Stages, Structures: Gastrula:75%-epiboly (8.0h-9.0h) to Adult (90d-730d, breeding adult)
  anterior crista, anterior crista primordium, brain dorsal region, central nervous system (all 40) expand
Curated Microarray Expression: GEO (1)
MUTANTS AND TARGETED KNOCKDOWNS
Mutant lines: 1 genotype
Alleles: tud18Gt
Knockdown reagents: MO1-msxc (1)
PHENOTYPE
Data: 2 figures from Phillips et al., 2006
Observed in: cartilage development, cranial cartilage, embryonic viscerocranium morphogenesis, post-vent region
GENE ONTOLOGY
Ontology GO Term
Biological Process otic placode formation (more)
Cellular Component nucleus (more)
Molecular Function DNA binding (more)
GO Terms (all 7)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001356 (1)
  • InterPro:IPR009057 (1)
  • InterPro:IPR017970 (1)
  • InterPro:IPR020479 (1)
  • PROSITE:PS00027 (1)
  • PROSITE:PS50071 (1)
  • Pfam:PF00046 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA msxc-001 (1) 2028
    GENE PRODUCT DESCRIPTION
    ANTIBODIES No data available
    CONSTRUCTS WITH SEQUENCES FROM msxc No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    msxc Contained in: [BAC] CH211-217G15 (1) (order this), DKEYP-85D1
    msxc Encodes: [EST] eu507 (1), fc66g03 (1)
    [cDNA] MGC:86596 (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131272 (1) 944 bp
    Genomic GenBank:CR589879 201310 bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q6IQV1 (1) 274 aa
    Sequence Clusters UniGene:32741 (1)
    Sequence Information (all 20)
    OTHER msxc GENE PAGES
  • Gene:30526 (1)
  • VEGA:OTTDARG00000001892 (1)
  • Ensembl(Zv9):ENSDARG00000015674 (1)
  • MAPPING INFORMATION
    Chr: 13, 20 Details View Map: Merged   Individual Panels
    ORTHOLOGY
      Evidence
    Species Symbol Chromosome (Position) Accession # AA CL
    Zebrafish msxc 13, 20  
    Mouse Msx3 7 ( 85.04 cM)
  • MGI:106587
  • Gene:17703
  • CITATIONS (79)