ZFIN ID: ZDB-GENE-980526-306
Gene Name: muscle segment homeobox C
Gene Symbol: msxc
Previous Names: msh-C, mshC, msx-c, etID309953.13 (1), zgc:86596 (1)
Location: Chr: 13   Details
Nomenclature History
GENE EXPRESSION
All Expression Data: 65 figures from 40 publications
Directly Submitted Expression Data: 7 figures (19 images) from Thisse et al., 2005 [eu507]
Wild-type Stages, Structures: Gastrula:75%-epiboly (8.0h-9.0h) to Adult (90d-730d, breeding adult)
  anterior crista, anterior crista primordium, brain dorsal region, central nervous system (all 47) expand
Curated Microarray Expression: GEO (1)
MUTANTS AND TARGETED KNOCKDOWNS
Mutant lines: msxctud18Gt/+(AB/TL)
Knockdown reagents: MO1-msxc (1)

Allele Type Mutagen Suppliers
tud18Gt Transgenic Insertion DNA
  • European Zebrafish Resource Center (EZRC) (order this)
  • PHENOTYPE
    Data: 2 figures from Phillips et al., 2006
    Observed in: cartilage development, cranial cartilage, embryonic viscerocranium morphogenesis, post-vent region
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process otic placode formation (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001356 (1)
  • InterPro:IPR009057 (1)
  • InterPro:IPR017970 (1)
  • InterPro:IPR020479 (1)
  • PROSITE:PS00027 (1)
  • PROSITE:PS50071 (1)
  • Pfam:PF00046 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA msxc-001 (1) 2028
    GENE PRODUCT DESCRIPTION
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM msxc No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    msxc Contained in: [BAC] CH211-217G15 (1) (order this), DKEYP-85D1
    msxc Encodes: [EST] eu507 (1), fc66g03 (1)
    [cDNA] MGC:86596 (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131272 (1) 944 bp
    Genomic GenBank:CR589879 201310 bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q6IQV1 (1) 274 aa
    Sequence Clusters UniGene:32741 (1)
    Sequence Information (all 20)
    OTHER msxc GENE PAGES
  • Gene:30526 (1)
  • VEGA:OTTDARG00000001892 (1)
  • Ensembl(Zv9):ENSDARG00000015674 (1)
  • ORTHOLOGY
      Evidence
    Species Symbol Chr (Position) Accession # AA CL
    Zebrafish msxc 13  
    Mouse Msx3 7 ( 85.04 cM)
  • MGI:106587
  • Gene:17703
  • Orthology Details
    CITATIONS (82)