ZFIN ID: ZDB-GENE-030616-132
Gene Name: MYC binding protein 2
Gene Symbol: mycbp2
Previous Names: esr, esrom (2), fa97c06, ns:zft368, PAM (1), si:busm1-12g7.1, si:dz12g7.1, si:dz256p4.1, til, tilsit, wu:fa97c06, xx:zft368, zft368
Location: Chr: 9   Details
Nomenclature History
GENE EXPRESSION
All Expression Data: 3 figures from 3 publications
Wild-type Stages, Structures: Cleavage:4-cell (1.0h-1.25h) to Adult (90d-730d, breeding adult)
  brain, eye, gill, heart (all 11) expand
Curated Microarray Expression: GEO (1)
MUTANTS AND TARGETED KNOCKDOWNS
Mutant lines: 20 genotypes
Alleles: la016495Tg, la016496Tg, mycbp2_unspecified, sa17311, sa21455 (all 22) expand
Knockdown reagents: MO1-mycbp2 (1), MO2-mycbp2 (1)
PHENOTYPE
Data: 25 figures from 6 publications
Observed in: developmental pigmentation, eye ipsilateral side, habenular commissure, nervous system (all 12) expand
GENE ONTOLOGY
Ontology GO Term
Biological Process protein ubiquitination (more)
Cellular Component cytoplasm (more)
Molecular Function ubiquitin-protein transferase activity (more)
GO Terms (all 11)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000408 (1)
  • InterPro:IPR001841 (1)
  • InterPro:IPR003646 (1)
  • InterPro:IPR004939 (1)
  • InterPro:IPR008979 (1)
  • InterPro:IPR009091 (1)
  • InterPro:IPR012983 (1)
  • InterPro:IPR013083 (1)
  • InterPro:IPR013783 (1)
  • InterPro:IPR014756 (1)
  • InterPro:IPR017868 (1)
  • InterPro:IPR027047 (1)
  • PROSITE:PS00626 (1)
  • PROSITE:PS50012 (1)
  • PROSITE:PS50089 (1)
  • PROSITE:PS50194 (1)
  • PROSITE:PS51284 (1)
  • Pfam:PF00415 (1)
  • Pfam:PF00630 (1)
  • Pfam:PF08005 (1)
  • Pfam:PF08239 (1)
  • Pfam:PF13639 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA mycbp2-001 (1) 15337
    ottdart00000001875 (1) 2743
    ottdart00000001995 (1) 9225
    GENE PRODUCT DESCRIPTION
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM mycbp2 No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    mycbp2 Contained in: [BAC] CH211-4P8 (1) (order this), CH211-221B16 (1) (order this), CH211-279B21 (1) (order this), DKEY-250A21 (1)
    [PAC] BUSM1-12G7 (1) (order this), BUSM1-256P4 (order this)
    mycbp2 Encodes: [EST] fa97c06, zft368
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001012247 (1) 15334 bp
    Genomic GenBank:AL954845 (1) 226343 bp Blast at MegaBLAST
    Polypeptide UniProtKB:F1QI76 (1) 4648 aa
    Sequence Clusters UniGene:29977 (1)
    Sequence Information (all 67)
    OTHER mycbp2 GENE PAGES
  • Gene:368439 (1)
  • VEGA:OTTDARG00000001756 (1)
  • VEGA:OTTDARG00000001868 (1)
  • VEGA:OTTDARG00000030613 (1)
  • Ensembl(Zv9):ENSDARG00000001220 (1)
  • ORTHOLOGY
      Evidence
    Species Symbol Chr (Position) Accession # AA CL
    Zebrafish mycbp2 9  
    Human MYCBP2 13 (13q22)
  • OMIM:610392
  • Gene:23077
  • Mouse Mycbp2 14 ( 51.79 cM)
  • MGI:2179432
  • Gene:105689
  • Orthology Details
    CITATIONS (32)