ZFIN Gene: mycbp2

ZFIN ID: ZDB-GENE-030616-132

ZFIN ID: ZDB-GENE-030616-132

Gene Name:	MYC binding protein 2
Gene Symbol:	mycbp2
Previous Names:	esr, esrom (2), fa97c06, ns:zft368, PAM (1), si:busm1-12g7.1, si:dz12g7.1, si:dz256p4.1, til, tilsit, wu:fa97c06, xx:zft368, zft368
Nomenclature History

GENE EXPRESSION
All Expression Data:	3 figures from 3 publications
Wild-type Stages, Structures:	Cleavage:4-cell (1.0h-1.25h) to Adult (90d-730d, breeding adult)
	brain , eye , gill , heart (all 11)
Curated Microarray Expression:	GEO (1)

MUTANTS AND TARGETED KNOCKDOWNS

Mutant lines:	20 genotypes
Alleles:	la016495Tg, la016496Tg, mycbp2_unspecified, tb241a, te250 (all 20)
Knockdown reagents:	MO1-mycbp2 (1), MO2-mycbp2 (1)

PHENOTYPE

Data:	24 figures from 6 publications
Observed in:	developmental pigmentation , eye ipsilateral side, habenular commissure , nervous system (all 12)

GENE ONTOLOGY

Ontology	GO Term
Biological Process	axon choice point recognition (more)
Cellular Component	cytoplasm (more)
Molecular Function	ubiquitin-protein ligase activity (more)

GO Terms (all 10)

PROTEIN FAMILIES, DOMAINS AND SITES
InterPro:IPR000408 (1) InterPro:IPR001841 (1) InterPro:IPR004939 (1) InterPro:IPR008979 (1) InterPro:IPR009091 (1) InterPro:IPR012983 (1) InterPro:IPR013083 (1) InterPro:IPR013783 (1) InterPro:IPR014756 (1) InterPro:IPR017868 (1) InterPro:IPR027047 (1)	PROSITE:PS00626 (1) PROSITE:PS50012 (1) PROSITE:PS50089 (1) PROSITE:PS50194 (1) PROSITE:PS51284 (1)	Pfam:PF00415 (1) Pfam:PF00630 (1) Pfam:PF08005 (1) Pfam:PF13639 (1)

TRANSCRIPTS
Type	Name	Length (bp)	Analysis
mRNA	mycbp2-001 (1)	15337	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT Vega
	ottdart00000001875 (1)	2743	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT Vega
	ottdart00000001995 (1)	9225	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT Vega

GENE PRODUCT DESCRIPTION

ANTIBODIES No data available

CONSTRUCTS WITH SEQUENCES FROM mycbp2 No data available

SEGMENT (CLONE AND PROBE) RELATIONSHIPS

mycbp2 Contained in:	[BAC] CH211-4P8 (1) (order this), CH211-221B16 (1) (order this), CH211-279B21 (1) (order this), DKEY-250A21 (1) (order this) [PAC] BUSM1-12G7 (1) (order this), BUSM1-256P4 (order this)
mycbp2 Encodes:	[EST] fa97c06, zft368

SEQUENCE INFORMATION

Type	Accession #	Length (bp/aa)	Analysis
RNA	RefSeq:NM_001012247 (1)	15334 bp	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT Vega
Genomic	GenBank:AL954845 (1)	226343 bp	Blast at MegaBLAST
Polypeptide	UniProtKB:F1QI76 (1)	4648 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast Vega Protein Blast
Sequence Clusters	UniGene:29977 (1)

OTHER mycbp2 GENE PAGES

Gene:368439 (1)

VEGA:OTTDARG00000001756 (1)

VEGA:OTTDARG00000001868 (1)

VEGA:OTTDARG00000030613 (1)

Ensembl(Zv9):ENSDARG00000001220 (1)

MAPPING INFORMATION
Chr: 2, 9 Details

ORTHOLOGY

CITATIONS (30)