ZFIN Sequences for Gene: CH211-247L22

ZFIN ID: ZDB-BAC-050218-1255

ZFIN ID: ZDB-BAC-050218-1255

SEQUENCE INFORMATION

BAC Name:	CH211-247L22

SEQUENCE INFORMATION

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:NM_001004123 (1)	3813 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:NM_001020774 (1)	3642 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:NM_001110104 (1)	1981 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:NM_131091 (1)	1638 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:NM_001123310 (1)		Select Tool ZFIN BLAST NCBI BLAST MegaBLAST Ensembl UCSC BLAT
	RefSeq:XM_009304051 (1)	3983 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_005167161 (1)	3587 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XR_002459337 (1)	5461 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XR_002459338 (1)	3429 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:GFIL01038989 (1)	3879 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AB154207 (1)	3813 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:BC162459 (1)	3285 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:BC095871 (1)	2091 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:BC154156 (1)	1981 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:GDQQ01049154 (1)	1892 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:BC117598 (1)	1650 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:GFIL01001808 (1)	1628 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:EE686075 (1)	953 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AF024536 (1)	938 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:EH608855 (1)	879 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:EH591361 (1)	878 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:CK026399 (1)	840 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AL715934 (1)	716 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:BQ262749 (1)	685 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:EB931820 (1)	645 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:EB931438 (1)	600 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:EB775335 (1)	585 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AL728037 (1)	448 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:EB909784 (1)	407 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	RefSeq:NW_018394729 (1)		Blast at MegaBLAST
	GenBank:CR626904 (2)	203689 nt	Blast at MegaBLAST
	GenBank:BX005025 (1)	196375 nt	Select Tool MegaBLAST Ensembl
	GenBank:CR387936 (2)	170195 nt	Select Tool MegaBLAST Ensembl
	GenBank:CR933520 (1)	165296 nt	Select Tool MegaBLAST Ensembl
	GenBank:AL807792	160553 nt	Select Tool MegaBLAST Ensembl
	GenBank:AL627262 (2)	145079 nt	Select Tool MegaBLAST Ensembl
	GenBank:BX322623 (2)	104062 nt	Select Tool MegaBLAST Ensembl
	GenBank:CR854894 (2)	76730 nt	Select Tool MegaBLAST Ensembl
	GenBank:CR847935 (2)	65200 nt	Select Tool MegaBLAST Ensembl
	GenBank:CT573137 (2)	42088 nt	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:Q68Y21 (1)	1009 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M1N6H2 (1)	972 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:B0R061 (1)	972 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M2BEL3 (1)	927 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M3B4Y9 (1)	876 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:B0R063 (1)	666 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:B0R059 (1)	292 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	RefSeq:NP_001004123 (1)	1009 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:NP_001018610 (1)	972 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:NP_001116782 (1)	666 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:NP_571166 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_005167218 (1)	927 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_009302326 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	GenPept:AAI62459 (1)	1009 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:BAD36785 (1)	1009 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:Q68Y21 (1)	1009 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:B0R061 (1)	972 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:AAI17599 (1)	292 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:AAB82272 (1)	266 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:CAE17613 (1)	51 aa	Select Tool ZFIN BLAST NCBI BLAST

CH211-247L22 CONTAINS

Marker	Type	Accession #	Length (nt/aa)	Analysis
[GENE] atoh1a (138)	RNA	RefSeq:NM_131091	1638	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:BC117598	1650	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:GFIL01001808	1628	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:AF024536	938	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:EH608855	879	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:EH591361	878	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	Genomic	GenBank:AL807792	160553	Select Tool MegaBLAST Ensembl
	Polypeptide	UniProtKB:B0R059	292	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	Polypeptide	RefSeq:NP_571166		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	Polypeptide	GenPept:AAI17599	292	Select Tool ZFIN BLAST NCBI BLAST
	Polypeptide	GenPept:AAB82272	266	Select Tool ZFIN BLAST NCBI BLAST
[GENE] grid2 (14)	RNA	RefSeq:XR_002459337	5461	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	RefSeq:XM_009304051	3983	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	RefSeq:NM_001004123	3813	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	RefSeq:XM_005167161	3587	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	RefSeq:XR_002459338	3429	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:AB154207	3813	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:BC162459	3285	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:GDQQ01049154	1892	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	Genomic	GenBank:CR626904	203689	Blast at MegaBLAST
	Genomic	GenBank:CR387936	170195	Select Tool MegaBLAST Ensembl
	Genomic	GenBank:CR933520	165296	Select Tool MegaBLAST Ensembl
	Genomic	GenBank:AL807792	160553	Select Tool MegaBLAST Ensembl
	Genomic	GenBank:AL627262	145079	Select Tool MegaBLAST Ensembl
	Genomic	GenBank:BX322623	104062	Select Tool MegaBLAST Ensembl
	Genomic	GenBank:CR854894	76730	Select Tool MegaBLAST Ensembl
	Genomic	GenBank:CR847935	65200	Select Tool MegaBLAST Ensembl
	Genomic	GenBank:CT573137	42088	Select Tool MegaBLAST Ensembl
	Polypeptide	UniProtKB:Q68Y21	1009	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	Polypeptide	UniProtKB:A0A8M2BEL3	927	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	Polypeptide	UniProtKB:A0A8M3B4Y9	876	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	Polypeptide	RefSeq:XP_009302326		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	Polypeptide	RefSeq:NP_001004123	1009	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	Polypeptide	RefSeq:XP_005167218	927	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	Polypeptide	GenPept:Q68Y21	1009	Select Tool ZFIN BLAST NCBI BLAST
	Polypeptide	GenPept:BAD36785	1009	Select Tool ZFIN BLAST NCBI BLAST
	Polypeptide	GenPept:AAI62459	1009	Select Tool ZFIN BLAST NCBI BLAST
	Polypeptide	GenPept:CAE17613	51	Select Tool ZFIN BLAST NCBI BLAST
[GENE] mpeg1.3 (6)	RNA	RefSeq:NM_001123310		Select Tool ZFIN BLAST NCBI BLAST MegaBLAST Ensembl UCSC BLAT
	Genomic	RefSeq:NW_018394729		Blast at MegaBLAST
	Genomic	GenBank:BX005025	196375	Select Tool MegaBLAST Ensembl
	Genomic	GenBank:AL807792	160553	Select Tool MegaBLAST Ensembl
	Polypeptide	UniProtKB:B0R063	666	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	Polypeptide	RefSeq:NP_001116782	666	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
[GENE] smarcad1a (16)	RNA	RefSeq:NM_001020774	3642	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	RefSeq:NM_001110104	1981	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:GFIL01038989	3879	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:BC095871	2091	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:BC154156	1981	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:EE686075	953	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:CK026399	840	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:AL715934	716	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:BQ262749	685	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:EB931820	645	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:EB931438	600	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:EB775335	585	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:AL728037	448	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:EB909784	407	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	Genomic	GenBank:BX005025	196375	Select Tool MegaBLAST Ensembl
	Genomic	GenBank:AL807792	160553	Select Tool MegaBLAST Ensembl
	Polypeptide	UniProtKB:B0R061	972	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	Polypeptide	UniProtKB:A0A8M1N6H2	972	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	Polypeptide	RefSeq:NP_001018610	972	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	Polypeptide	GenPept:B0R061	972	Select Tool ZFIN BLAST NCBI BLAST