Gene

cd9b

ID

ZDB-GENE-040426-2768

Name

CD9 molecule b

Symbol

cd9b Nomenclature History

Previous Names

cd9l
fb82b11
wu:fb82b11
zgc:56512

Type

protein_coding_gene

Location

Chr: 4 Mapping Details/Browsers

Description

Involved in posterior lateral line development. Predicted to localize to integral component of plasma membrane. Human ortholog(s) of this gene implicated in prostate adenocarcinoma. Is expressed in several structures, including EVL; epidermis; periderm; pronephric duct; and sensory system. Orthologous to human CD9 (CD9 molecule).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

8 figures from 3 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

MGC:56512 (11 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: 2 figures from Gallardo et al., 2010
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With cd9b Human Ortholog

No data available

Associated With cd9b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR018503	Tetraspanin, conserved site
Domain	IPR042055	CD9, extracellular domain
Family	IPR000301	Tetraspanin, animals
Family	IPR018499	Tetraspanin/Peripherin
Homologous_superfamily	IPR008952	Tetraspanin, EC2 domain superfamily

Domain Details Per Protein

Protein	Length	CD9, extracellular domain	Tetraspanin, animals	Tetraspanin, conserved site	Tetraspanin, EC2 domain superfamily	Tetraspanin/Peripherin
UniProtKB:Q1L9G6 InterPro	231
UniProtKB:Q7ZUH9 InterPro	227

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	cd9b-201 (1) Ensembl	Havana	859 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	cd9b-202 (1) Ensembl	Havana	934 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	cd9b-203 (1) Ensembl	Havana	1125 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	cd9b-204 (1) Ensembl	Havana	817 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	cd9b-206 (1) Ensembl	Havana	739 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	cd9b-207 (1) Ensembl	Havana	711 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	cd9b-005 (1) Ensembl	Havana	786 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations