ZFIN

ZFIN ID: ZDB-GENE-990714-15

ZFIN ID: ZDB-GENE-990714-15

CITATIONS (129 total)

Gene Name:	DNA (cytosine-5-)-methyltransferase 1
Gene Symbol:	dnmt1

Chen, C., He, M., Li, X., Yu, L., Liu, Y., Yang, Y., Li, L., Jia, J., Li, B. (2022) H₂O₂/DEM-Promoted Maft Promoter Demethylation Drives Nrf2/ARE Activation in Zebrafish. Life (Basel, Switzerland). 12(9)

Li, Y., Tang, C., Liu, F., Zhu, C., Liu, F., Zhu, P., Wang, L. (2022) DNA methylation safeguards the generation of hematopoietic stem and progenitor cells by repression of Notch signaling. Development (Cambridge, England). 149(10):

Tang, D., Zheng, S., Zheng, Z., Liu, C., Zhang, J., Yan, R., Wu, C., Zuo, N., Wu, L., Xu, H., Liu, S., He, Y. (2022) Dnmt1 is required for the development of auditory organs via cell cycle arrest and Fgf signalling. Cell Proliferation. 55(5):e13225

Wang, C., Chen, X., Dai, Y., Zhang, Y., Sun, Y., Cui, X. (2022) Comparative transcriptome analysis of heat-induced domesticated zebrafish during gonadal differentiation. BMC genomic data. 23:39

Wu, F., Yang, Q., Mi, Y., Wang, F., Cai, K., Zhang, Y., Wang, Y., Wang, X., Gui, Y., Li, Q. (2022) miR-29b-3p Inhibitor Alleviates Hypomethylation-Related Aberrations Through a Feedback Loop Between miR-29b-3p and DNA Methylation in Cardiomyocytes. Frontiers in cell and developmental biology. 10:788799

El Fersioui, Y., Pinton, G., Allaman-Pillet, N., Schorderet, D.F. (2021) Hmx1 regulates urfh1 expression in the craniofacial region in zebrafish. PLoS One. 16:e0245239

Madakashira, B.P., Zhang, C., Macchi, F., Magnani, E., Sadler, K.C. (2021) Nuclear Organization during Hepatogenesis in Zebrafish Requires Uhrf1. Genes. 12(7):

Magnani, E., Macchi, F., Madakashira, B.P., Zhang, C., Alaydaroos, F., Sadler, K.C. (2021) uhrf1 and dnmt1 Loss Induces an Immune Response in Zebrafish Livers Due to Viral Mimicry by Transposable Elements. Frontiers in immunology. 12:627926

O'Meara, C.P., Guerri, L., Lawir, D.F., Mateos, F., Iconomou, M., Iwanami, N., Soza-Ried, C., Sikora, K., Siamishi, I., Giorgetti, O., Peter, S., Schorpp, M., Boehm, T. (2021) Genetic landscape of T cells identifies synthetic lethality for T-ALL. Communications biology. 4:1201

Ross, S.E., Hesselson, D., Bogdanovic, O. (2021) Developmental Accumulation of Gene Body and Transposon Non-CpG Methylation in the Zebrafish Brain. Frontiers in cell and developmental biology. 9:643603

Wu, X., Zhang, H., Zhang, B., Zhang, Y., Wang, Q., Shen, W., Wu, X., Li, L., Xia, W., Nakamura, R., Liu, B., Liu, F., Takeda, H., Meng, A., Xie, W. (2021) Methylome inheritance and enhancer dememorization reset an epigenetic gate safeguarding embryonic programs. Science advances. 7:eabl3858

Angileri, K.M., Gross, J.M. (2020) dnmt1 function is required to maintain retinal stem cells within the ciliary marginal zone of the zebrafish eye. Scientific Reports. 10:11293

Bautista, N.M., Crespel, A., Crossley, J., Padilla, P., Burggren, W. (2020) Parental transgenerational epigenetic inheritance related to dietary crude oil exposure in Danio rerio. The Journal of experimental biology. 223(Pt 16):

Can, H., Chanumolu, S.K., Gonzalez-Muñoz, E., Prukudom, S., Otu, H.H., Cibelli, J.B. (2020) Comparative analysis of single-cell transcriptomics in human and Zebrafish oocytes. BMC Genomics. 21:471

Chatterjee, N., Lee, H., Kim, J., Kim, D., Lee, S., Choi, J. (2020) Critical window of exposure of CMIT/MIT with respect to developmental effects on zebrafish embryos: Multi-level endpoint and proteomics analysis. Environmental pollution (Barking, Essex : 1987). 268:115784

Ding, X., Sun, W., Dai, L., Liu, C., Sun, Q., Wang, J., Zhang, P., Li, K., Yu, L. (2020) Parental exposure to environmental concentrations of tris(1,3-dichloro-2-propyl)phosphate induces abnormal DNA methylation and behavioral changes in F1 zebrafish larvae. Environmental pollution (Barking, Essex : 1987). 267:115305

Fan, X., Hou, T., Guan, Y., Li, X., Zhang, S., Wang, Z. (2020) Genomic responses of DNA methylation and transcript profiles in zebrafish cells upon nutrient deprivation stress. The Science of the total environment. 722:137980

Iwanami, N., Lawir, D.F., Sikora, K., O Meara, C., Takeshita, K., Schorpp, M., Boehm, T. (2020) Transgenerational inheritance of impaired larval T cell development in zebrafish. Nature communications. 11:4505

Iwanami, N., Takeshita, K., Lawir, D.F., Suetake, I., Tajima, S., Sikora, K., Trancoso, I., ÓMeara, C., Siamishi, I., Takahama, Y., Furutani-Seiki, M., Kondoh, H., Yonezawa, Y., Schorpp, M., Boehm, T. (2020) Epigenetic Protection of Vertebrate Lymphoid Progenitor Cells by Dnmt1. iScience. 23:101260

Kang, Q., Hu, M., Jia, J., Bai, X., Liu, C., Wu, Z., Chen, W., Li, M. (2020) Global Transcriptomic Analysis of Zebrafish Glucagon Receptor Mutant Reveals Its Regulated Metabolic Network. International Journal of Molecular Sciences. 21(3):

Lin, W., Yan, Y., Ping, S., Li, P., Li, D., Hu, J., Liu, W., Wen, X., Ren, Y. (2020) Metformin-Induced Epigenetic Toxicity in Zebrafish: Experimental and Molecular Dynamics Simulation Studies. Environmental science & technology. 55(3):1672-1681

Park, K., Han, E.J., Ahn, G., Kwak, I.S. (2020) Effects of combined stressors to cadmium and high temperature on antioxidant defense, apoptotic cell death, and DNA methylation in zebrafish (Danio rerio) embryos. The Science of the total environment. 716:137130

Park, K., Han, E.J., Ahn, G., Kwak, I.S. (2020) Effects of thermal stress-induced lead (Pb) toxicity on apoptotic cell death, inflammatory response, oxidative defense, and DNA methylation in zebrafish (Danio rerio) embryos. Aquatic toxicology (Amsterdam, Netherlands). 224:105479

Robinson, P.C., Littler, H.R., Lange, A., Santos, E.M. (2020) Developmental exposure window influences silver toxicity but does not affect the susceptibility to subsequent exposures in zebrafish embryos. Histochemistry and cell biology. 154(5):579-595

Ross, S.E., Angeloni, A., Geng, F.S., de Mendoza, A., Bogdanovic, O. (2020) Developmental remodelling of non-CG methylation at satellite DNA repeats. Nucleic acids research. 48(22):12675-12688

Tsai, S.M., Chu, K.C., Jiang, Y.J. (2020) Newly identified Gon4l/Udu-interacting proteins implicate novel functions. Scientific Reports. 10:14213

Zhu, Z., Liu, Y., Xu, W., Liu, T., Xie, Y., Sham, K.W.Y., Sha, O., Cheng, C.H.K. (2020) Functional Characterization and Expression Analyses Show Differential Roles of Maternal and Zygotic Dgcr8 in Early Embryonic Development. Frontiers in genetics. 11:299

Blanc, M., Rüegg, J., Scherbak, N., Keiter, S.H. (2019) Environmental chemicals differentially affect epigenetic-related mechanisms in the zebrafish liver (ZF-L) cell line and in zebrafish embryos. Aquatic toxicology (Amsterdam, Netherlands). 215:105272

Ganz, J., Melancon, E., Wilson, C., Amores, A., Batzel, P., Strader, M., Braasch, I., Diba, P., Kuhlman, J.A., Postlethwait, J.H., Eisen, J.S. (2019) Epigenetic factors Dnmt1 and Uhrf1 coordinate intestinal development. Developmental Biology. 455:473-484

González-Rojo, S., Lombó, M., Fernández-Díez, C., Herráez, M.P. (2019) Male exposure to bisphenol a impairs spermatogenesis and triggers histone hyperacetylation in zebrafish testes. Environmental pollution (Barking, Essex : 1987). 248:368-379

Guo, W., Han, J., Wu, S., Shi, X., Wang, Q., Zhou, B. (2019) Bis(2-ethylhexyl)-2,3,4,5-tetrabromophthalate affects lipid metabolism in zebrafish larvae via DNA methylation modification. Environmental science & technology. 54(1):355-363

Jiang, Y., Li, J., Ren, F., Ji, C., Aniagu, S., Chen, T. (2019) PM2.5-induced extensive DNA methylation changes in the heart of zebrafish embryos and the protective effect of folic acid. Environmental pollution (Barking, Essex : 1987). 255:113331

Li, R., Guo, W., Lei, L., Zhang, L., Liu, Y., Han, J., Chen, L., Zhou, B. (2019) Early-life exposure to the organophosphorus flame-retardant tris (1,3-dichloro-2-propyl) phosphate induces delayed neurotoxicity associated with DNA methylation in adult zebrafish. Environment International. 134:105293

Lombó, M., Fernández-Díez, C., González-Rojo, S., Herráez, M.P. (2019) Genetic and epigenetic alterations induced by bisphenol A exposure during different periods of spermatogenesis: from spermatozoa to the progeny. Scientific Reports. 9:18029

Lombó, M., González-Rojo, S., Fernández-Díez, C., Herráez, M.P. (2019) Cardiogenesis impairment promoted by bisphenol A exposure is successfully counteracted by epigallocatechin gallate. Environmental pollution (Barking, Essex : 1987). 246:1008-1019

Olsvik, P.A., Whatmore, P., Penglase, S.J., Skjærven, K.H., Anglès d'Auriac, M., Ellingsen, S. (2019) Associations Between Behavioral Effects of Bisphenol A and DNA Methylation in Zebrafish Embryos. Frontiers in genetics. 10:184

Pisera-Fuster, A., Faillace, M.P., Bernabeu, R. (2019) Pre-Exposure to Nicotine with Nocturnal Abstinence Induces Epigenetic Changes that Potentiate Nicotine Preference. Molecular neurobiology. 57(4):1828-1846

Santangeli, S., Consales, C., Pacchierotti, F., Habibi, H.R., Carnevali, O. (2019) Transgenerational effects of BPA on female reproduction. The Science of the total environment. 685:1294-1305

Teng, M., Chen, X., Wang, C., Song, M., Zhang, J., Bi, S., Wang, C. (2019) Life cycle exposure to propiconazole reduces fecundity by disrupting the steroidogenic pathway and altering DNA methylation in zebrafish (Danio rerio). Environment International. 135:105384

Yun, Y., Zhang, Y., Li, G., Chen, S., Sang, N. (2019) Embryonic exposure to oxy-polycyclic aromatic hydrocarbon interfere with pancreatic β-cell development in zebrafish via altering DNA methylation and gene expression. The Science of the total environment. 660:1602-1609

Zhang, C., Li, D., Ge, T., Han, J., Qi, Y., Huang, D. (2019) 2,4-Dichlorophenol induces feminization of zebrafish (Danio rerio) via DNA methylation. The Science of the total environment. 708:135084

Alfonso, S., Blanc, M., Joassard, L., Keiter, S.H., Munschy, C., Loizeau, V., Bégout, M.L., Cousin, X. (2018) Examining multi- and transgenerational behavioral and molecular alterations resulting from parental exposure to an environmental PCB and PBDE mixture. Aquatic toxicology (Amsterdam, Netherlands). 208:29-38

Fellous, A., Labed-Veydert, T., Locrel, M., Voisin, A.S., Earley, R.L., Silvestre, F. (2018) DNA methylation in adults and during development of the self-fertilizing mangrove rivulus, Kryptolebias marmoratus.. Ecology and evolution. 8:6016-6033

Laing, L.V., Viana, J., Dempster, E., Uren Webster, T.M., van Aerle, R., Mill, J., Santos, E.M. (2018) Sex-specific transcription and DNA methylation profiles of reproductive and epigenetic associated genes in the gonads and livers of breeding zebrafish. Comparative biochemistry and physiology. Part A, Molecular & integrative physiology. 222:16-25

Murphy, P.J., Wu, S.F., James, C.R., Wike, C.L., Cairns, B.R. (2018) Placeholder Nucleosomes Underlie Germline-to-Embryo DNA Methylation Reprogramming. Cell. 172(5):993-1006.e13

Rajshekar, S., Yao, J., Arnold, P.K., Payne, S.G., Zhang, Y., Bowman, T.V., Schmitz, R.J., Edwards, J.R., Goll, M. (2018) Pericentromeric hypomethylation elicits an interferon response in an animal model of ICF syndrome. eLIFE. 7:

Wang, L., Liu, X., Wang, H., Yuan, H., Chen, S., Chen, Z., de The, H., Zhou, J., Zhu, J. (2018) RNF4 regulates zebrafish granulopoiesis through the DNMT1-C/EBPα axis. FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 32(9):4930-4940

Wu, X., Shen, W., Zhang, B., Meng, A. (2018) The genetic program of oocytes can be modified in vivo in the zebrafish ovary. Journal of molecular cell biology. 10(6):479-493

Zhang, B., Wu, X., Zhang, W., Shen, W., Sun, Q., Liu, K., Zhang, Y., Wang, Q., Li, Y., Meng, A., Xie, W. (2018) Widespread Enhancer Dememorization and Promoter Priming during Parental-to-Zygotic Transition. Molecular Cell. 72:673-686.e6

Armant, O., Gombeau, K., Murat El Houdigui, S., Floriani, M., Camilleri, V., Cavalie, I., Adam-Guillermin, C. (2017) Zebrafish exposure to environmentally relevant concentration of depleted uranium impairs progeny development at the molecular and histological levels. PLoS One. 12:e0177932

Blanc, M., Kärrman, A., Kukucka, P., Scherbak, N., Keiter, S. (2017) Mixture-specific gene expression in zebrafish (Danio rerio) embryos exposed to perfluorooctane sulfonic acid (PFOS), perfluorohexanoic acid (PFHxA) and 3,3',4,4',5-pentachlorobiphenyl (PCB126). The Science of the total environment. 590-591:249-257

Chernyavskaya, Y., Mudbhary, R., Tokarz, D., Jacob, V., Gopinath, S., Zhang, C., Sun, X., Wang, S., Magnani, E., Madakashira, B.P., Yoder, J.A., Hoshida, Y., Sadler, K.C. (2017) Loss of DNA methylation in zebrafish embryos activates retrotransposons to trigger antiviral signaling. Development (Cambridge, England). 144(16):2925-2939

Gombeau, K., Bourdineaud, J.P., Ravanat, J.L., Armant, O., Camilleri, V., Cavalie, I., Floriani, M., Adam-Guillermin, C. (2017) Epigenetic, histopathological and transcriptomic effects following exposure to depleted uranium in adult zebrafish and their progeny. Aquatic toxicology (Amsterdam, Netherlands). 184:14-25

Heid, J., Cencioni, C., Ripa, R., Baumgart, M., Atlante, S., Milano, G., Scopece, A., Kuenne, C., Guenther, S., Azzimato, V., Farsetti, A., Rossi, G., Braun, T., Pompilio, G., Martelli, F., Zeiher, A.M., Cellerino, A., Gaetano, C., Spallotta, F. (2017) Age-dependent increase of oxidative stress regulates microRNA-29 family preserving cardiac health. Scientific Reports. 7:16839

Kamstra, J.H., Sales, L.B., Aleström, P., Legler, J. (2017) Differential DNA methylation at conserved non-genic elements and evidence for transgenerational inheritance following developmental exposure to mono(2-ethylhexyl) phthalate and 5-azacytidine in zebrafish. Epigenetics & chromatin. 10:20

Knecht, A.L., Truong, L., Marvel, S.W., Reif, D.M., Garcia, A., Lu, C., Simonich, M.T., Teeguarden, J.G., Tanguay, R.L. (2017) Transgenerational inheritance of neurobehavioral and physiological deficits from developmental exposure to benzo[a]pyrene in zebrafish. Toxicology and applied pharmacology. 329:148-157

Lee, S.L.J., Horsfield, J.A., Black, M.A., Rutherford, K., Fisher, A., Gemmell, N.J. (2017) Histological and transcriptomic effects of 17α-methyltestosterone on zebrafish gonad development. BMC Genomics. 18:557

Madakashira, B., Corbett, L., Zhang, C., Paoli, P., Casement, J.W., Mann, J., Sadler, K.C., Mann, D.A. (2017) Variant Histone H2afv Reprograms DNA Methylation During Early Zebrafish Development. Epigenetics. 12(9):811-824

Pradhan, A., Ivarsson, P., Ragnvaldsson, D., Berg, H., Jass, J., Olsson, P.E. (2017) Transcriptional responses of zebrafish to complex metal mixtures in laboratory studies overestimates the responses observed with environmental water. The Science of the total environment. 584-585:1138-1146

Ribas, L., Vanezis, K., Imués, M.A., Piferrer, F. (2017) Treatment with a DNA methyltransferase inhibitor feminizes zebrafish and induces long-term expression changes in the gonads. Epigenetics & chromatin. 10:59

Sanchez, O.F., Lee, J., Yu King Hing, N., Kim, S.E., Freeman, J.L., Yuan, C. (2017) Lead (Pb) exposure reduces global DNA methylation level by non-competitive inhibition and alteration of dnmt expression. Metallomics : integrated biometal science. 9(2):149-160

Wang, L., Liu, Z., Lin, H., Ma, D., Tao, Q., Liu, F. (2017) Epigenetic regulation of left-right asymmetry by DNA methylation. The EMBO journal. 36(20):2987-2997

Wirbisky-Hershberger, S.E., Sanchez, O.F., Horzmann, K.A., Thanki, D., Yuan, C., Freeman, J.L. (2017) Atrazine exposure decreases the activity of DNMTs, global DNA methylation levels, and dnmt expression. Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association. 109(Pt 1):727-734

Cofer, Z.C., Cui, S., EauClaire, S.F., Kim, C., Tobias, J.W., Hakonarson, H., Loomes, K.M., Matthews, R.P. (2016) Methylation Microarray Studies Highlight PDGFA Expression as a Factor in Biliary Atresia. PLoS One. 11:e0151521

Iwanami, N., Sikora, K., Richter, A.S., Mönnich, M., Guerri, L., Soza-Ried, C., Lawir, D.F., Mateos, F., Hess, I., O'Meara, C.P., Schorpp, M., Boehm, T. (2016) Forward Genetic Screens in Zebrafish Identify Pre-mRNA-Processing Pathways Regulating Early T Cell Development. Cell Reports. 17:2259-2270

Kent, B., Magnani, E., Walsh, M.J., Sadler, K.C. (2016) UHRF1 regulation of Dnmt1 is required for pre-gastrula zebrafish development. Developmental Biology. 412(1):99-113

Laing, L.V., Viana, J., Dempster, E.L., Trznadel, M., Trunkfield, L.A., Webster, T.M., van Aerle, R., Paull, G.C., Wilson, R.J., Mill, J., Santos, E.M. (2016) Bisphenol A causes reproductive toxicity, decreases dnmt1 transcription, and reduces global DNA methylation in breeding zebrafish (Danio rerio). Epigenetics. 11(7):526-38

Leontovich, A.A., Intine, R.V., Sarras, M.P. (2016) Epigenetic Studies Point to DNA Replication/Repair Genes as a Basis for the Heritable Nature of Long Term Complications in Diabetes. Journal of Diabetes Research. 2016:2860780

Liu, Y., Zhang, Y., Tao, S., Guan, Y., Zhang, T., Wang, Z. (2016) Global DNA methylation in gonads of adult zebrafish Danio rerio under bisphenol A exposure. Ecotoxicology and environmental safety. 130:124-132

Santangeli, S., Maradonna, F., Gioacchini, G., Cobellis, G., Piccinetti, C.C., Dalla Valle, L., Carnevali, O. (2016) BPA-Induced Deregulation Of Epigenetic Patterns: Effects On Female Zebrafish Reproduction. Scientific Reports. 6:21982

Aluru, N., Kuo, E., Helfrich, L.W., Karchner, S.I., Linney, E.A., Pais, J.E., Franks, D.G. (2015) Developmental exposure to 2,3,7,8-tetrachlorodibenzo-p-dioxin alters DNA methyltransferase (dnmt) expression in zebrafish (Danio rerio). Toxicology and applied pharmacology. 284(2):142-51

Deveau, A.P., Forrester, A.M., Coombs, A.J., Wagner, G.S., Grabher, C., Chute, I.C., Léger, D., Mingay, M., Alexe, G., Rajan, V., Liwski, R., Hirst, M., Steigmaier, K., Lewis, S.M., Look, A.T., Berman, J.N. (2015) Epigenetic therapy restores normal hematopoiesis in a zebrafish model of NUP98-HOXA9-induced myeloid disease. Leukemia. 29(10):2086-97

Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549

Huang, Y., Linsen, S.E. (2015) Partial depletion of yolk during zebrafish embryogenesis changes the dynamics of methionine cycle and metabolic genes. BMC Genomics. 16:427

Jacob, V., Chernyavskaya, Y., Chen, X., Tan, P.S., Kent, B., Hoshida, Y., Sadler, K.C. (2015) DNA hypomethylation induces a DNA replication-associated cell cycle arrest to block hepatic outgrowth in uhrf1 mutant zebrafish embryos. Development (Cambridge, England). 142(3):510-21

Liu, X., Jia, X., Yuan, H., Ma, K., Chen, Y., Jin, Y., Deng, M., Pan, W., Chen, S., Chen, Z., de The, H., Zon, L.I., Zhou, Y., Zhou, J., Zhu, J. (2015) DNA methyltransferase 1 functions through C/ebpa to maintain hematopoietic stem and progenitor cells in zebrafish. Journal of Hematology & Oncology. 8:15

Marjoram, L., Alvers, A., Deerhake, M.E., Bagwell, J., Mankiewicz, J., Cocchiaro, J.L., Beerman, R.W., Willer, J., Sumigray, K.D., Katsanis, N., Tobin, D.M., Rawls, J.F., Goll, M.G., Bagnat, M. (2015) Epigenetic control of intestinal barrier function and inflammation in zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 112(9):2770-5

Balci, T.B., Prykhozhij, S.V., Teh, E.M., Da'as, S.I., McBride, E., Liwski, R., Chute, I.C., Leger, D., Lewis, S.M., Berman, J.N. (2014) A transgenic zebrafish model expressing KIT-D816V recapitulates features of aggressive systemic mastocytosis. British journal of haematology. 167(1):48-61

Seritrakul, P., and Gross, J.M. (2014) Expression of the de novo DNA methyltransferases (dnmt3-dnmt8) during zebrafish lens development. Developmental Dynamics : an official publication of the American Association of Anatomists. 243(2):350-6

Shimoda, N., Hirose, K., Kaneto, R., Izawa, T., Yokoi, H., Hashimoto, N., Kikuchi, Y. (2014) No Evidence for AID/MBD4-Coupled DNA Demethylation in Zebrafish Embryos. PLoS One. 9:e114816

Sreenivasan, R., Jiang, J., Wang, X., Bartfai, R., Kwan, H.Y., Christoffels, A., and Orban, L. (2014) Gonad Differentiation in Zebrafish Is Regulated by the Canonical Wnt Signaling Pathway. Biology of reproduction. 90(2):45

Aanes, H., Ostrup, O., Andersen, I.S., Moen, L.F., Mathavan, S., Collas, P., and Alestrom, P. (2013) Differential transcript isoform usage pre- and post-zygotic genome activation in zebrafish. BMC Genomics. 14(1):331

Armant, O., März, M., Schmidt, R., Ferg, M., Diotel, N., Ertzer, R., Bryne, J.C., Yang, L., Baader, I., Reischl, M., Legradi, J., Mikut, R., Stemple, D., Ijcken, W.V., van der Sloot, A., Lenhard, B., Strähle, U., and Rastegar, S. (2013) Genome-wide, whole mount in situ analysis of transcriptional regulators in zebrafish embryos. Developmental Biology. 380(2):351-62

Fang, X., Thornton, C., Scheffler, B.E., and Willett, K.L. (2013) Benzo[a]pyrene decreases global and gene specific DNA methylation during zebrafish development. Environmental Toxicology and Pharmacology. 36(1):40-50

Huang, H.T., Kathrein, K.L., Barton, A., Gitlin, Z., Huang, Y.H., Ward, T.P., Hofmann, O., Dibiase, A., Song, A., Tyekucheva, S., Hide, W., Zhou, Y., and Zon, L.I. (2013) A network of epigenetic regulators guides developmental haematopoiesis in vivo. Nature cell biology. 15(12):1516-1525

Powell, C., Grant, A.R., Cornblath, E., and Goldman, D. (2013) Analysis of DNA methylation reveals a partial reprogramming of the Muller glia genome during retina regeneration. Proceedings of the National Academy of Sciences of the United States of America. 110(49):19814-19819

Sarras, M.P., Leontovich, A.A., Olsen, A.S., and Intine, R.V. (2013) Impaired tissue regeneration corresponds with altered expression of developmental genes that persists in the metabolic memory state of diabetic zebrafish. Wound repair and regeneration : official publication of the Wound Healing Society [and] the European Tissue Repair Society. 21(2):320-328

Matthews, R.P., Eauclaire, S.F., Mugnier, M., Lorent, K., Cui, S., Ross, M.M., Zhang, Z., Russo, P., and Pack, M. (2011) DNA hypomethylation causes bile duct defects in zebrafish and is a distinguishing feature of infantile biliary atresia. Hepatology (Baltimore, Md.). 53(3):905-914

Morris, A.C., Forbes-Osborne, M.A., Pillai, L.S., and Fadool, J.M. (2011) Microarray Analysis of XOPS-mCFP Zebrafish Retina Identifies Genes Associated with Rod Photoreceptor Degeneration and Regeneration. Investigative ophthalmology & visual science. 52(5):2255-2266

Tittle, R.K., Sze, R., Ng, A., Nuckels, R.J., Swartz, M.E., Anderson, R.M., Bosch, J., Stainier, D.Y., Eberhart, J.K., and Gross, J.M. (2011) Uhrf1 and Dnmt1 are required for development and maintenance of the zebrafish lens. Developmental Biology. 350(1):50-63

Rai, K., Jafri, I.F., Chidester, S., James, S.R., Karpf, A.R., Cairns, B.R., and Jones, D.A. (2010) Dnmt3 and G9a cooperate for tissue-specific development in zebrafish. The Journal of biological chemistry. 285(6):4110-4121

Rai, K., Sarkar, S., Broadbent, T.J., Voas, M., Grossmann, K.F., Nadauld, L.D., Dehghanizadeh, S., Hagos, F.T., Li, Y., Toth, R.K., Chidester, S., Bahr, T.M., Johnson, W.E., Sklow, B., Burt, R., Cairns, B.R., and Jones, D.A. (2010) DNA demethylase activity maintains intestinal cells in an undifferentiated state following loss of APC. Cell. 142(6):930-942

Anderson, R.M., Bosch, J.A., Goll, M.G., Hesselson, D., Dong, P.D., Shin, D., Chi, N.C., Shin, C.H., Schlegel, A., Halpern, M., and Stainier, D.Y. (2009) Loss of Dnmt1 catalytic activity reveals multiple roles for DNA methylation during pancreas development and regeneration. Developmental Biology. 334(1):213-223

Goll, M.G., Anderson, R., Stainier, D.Y., Spradling, A.C., and Halpern, M.E. (2009) Transcriptional Silencing and Reactivation in Transgenic Zebrafish. Genetics. 182(3):747-755

Rai, K., Chidester, S., Zavala, C.V., Manos, E.J., James, S.R., Karpf, A.R.,Jones, D.A., and Cairns, B.R. (2007) Dnmt2 functions in the cytoplasm to promote liver, brain, and retina development in zebrafish. Genes & Development. 21(3):261-266

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Additional Citations (26):

ZFIN Staff (2023) Automated Curation of UniProt Database Links. Automated Data Submission.

Zebrafish Nomenclature Committee (2021) Nomenclature Data Curation (2021). Nomenclature Committee Submission.

ZFIN Staff (2020) Addition of links from ZFIN to Expression Atlas. Semi-automated Curation.

ZFIN Staff (2017) Curation of PANTHER Gene IDs. Automated Data Submission.

ZFIN Staff (2017) Curation of Alliance of Genome Resources Database Links. Automated Data Submission.

UniProt curators (2015) Electronic Gene Ontology annotations created by transferring manual GO annotations between related proteins based on shared sequence features.. Automated Data Submission.

ZFIN Staff (2015) Data Model Change: Sequence Targeting Reagents Removed from Environment. ZFIN Historical Data.

Busch-Nentwich, E., Kettleborough, R., Dooley, C. M., Scahill, C., Sealy, I., White, R., Herd, C., Mehroke, S., Wali, N., Carruthers, S., Hall, A., Collins, J., Gibbons, R., Pusztai, Z., Clark, R., and Stemple, D.L. (2013) Sanger Institute Zebrafish Mutation Project mutant data submission. ZFIN Direct Data Submission.

ZFIN Staff (2013) Semi-automated association of ENSDARG identifiers with ZFIN genes for the ZMP project. Semi-automated Curation.

UniProt-GOA (2011) Gene Ontology annotation based on the automatic assignment of UniProtKB Subcellular Location terms in UniProtKB/TrEMBL entries. Manually curated data.

Gaudet, P., Livstone, M., Thomas, P., The Reference Genome Project (2010) Annotation inferences using phylogenetic trees. Automated Data Submission.

ZFIN Staff (2007) Microarray Expression to Gene Association in ZFIN. Semi-automated Curation.

Ensembl curators, GOA curators (2006) Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara. Manually curated data.

Zebrafish Nomenclature Committee (2006) Mutant / transgenic name reservations. Nomenclature Committee Submission.

ZFIN Staff (2006) Curation of Ensembl Database Links. Automated Data Submission.

Thisse, B., Thisse, C. (2004) Fast Release Clones: A High Throughput Expression Analysis. ZFIN Direct Data Submission.

ZFIN Staff (2004) ZGC Data Curation and Association in ZFIN by ZFIN Staff. Semi-automated Curation.

ZFIN Staff (2003) Curation of VEGA Database Links. Automated Data Submission.

ZFIN Staff (2003) Curation of orthology data. Manually curated data.

ZFIN Staff (2003) Computational Sequence to Gene Association in ZFIN. Semi-automated Curation.

ZFIN Staff (2003) Gene Ontology Annotation Through Association of Enzyme Commission numbers with GO Terms. Automated Data Submission.

ZFIN Staff (2002) Gene Ontology Annotation Through Association of UniProt Keywords with GO Terms. Automated Data Submission.

ZFIN Staff (2002) Curation of NCBI Gene Data Via Shared RNA Sequence IDs. Automated Data Submission.

ZFIN Staff (2002) Scientific Curation. Manually curated data.

ZFIN Staff (2002) Gene Ontology Annotation Through Association of InterPro Records with GO Terms. Automated Data Submission.

Thisse, B., Pflumio, S., Fürthauer, M., Loppin, B., Heyer, V., Degrave, A., Woehl, R., Lux, A., Steffan, T., Charbonnier, X.Q. and Thisse, C. (2001) Expression of the zebrafish genome during embryogenesis (NIH R01 RR15402). ZFIN Direct Data Submission.