ZFIN

ZFIN ID: ZDB-GENE-990604-40

ZFIN ID: ZDB-GENE-990604-40

CITATIONS (121 total)

Gene Name:	opsin 1 (cone pigments), short-wave-sensitive 2
Gene Symbol:	opn1sw2

Angueyra, J.M., Kunze, V.P., Patak, L.K., Kim, H., Kindt, K., Li, W. (2023) Transcription factors underlying photoreceptor diversity. eLIFE. 12:

Gao, M., Hu, J., Zhu, Y., Wang, X., Zeng, S., Hong, Y., Zhao, G. (2022) Ferroptosis and Apoptosis Are Involved in the Formation of L-Selenomethionine-Induced Ocular Defects in Zebrafish Embryos. International Journal of Molecular Sciences. 23(9)

Liu, F., Qin, Y., Huang, Y., Gao, P., Li, J., Yu, S., Jia, D., Chen, X., Lv, Y., Tu, J., Sun, K., Han, Y., Reilly, J., Shu, X., Lu, Q., Tang, Z., Xu, C., Luo, D., Liu, M. (2022) Rod genesis driven by mafba in an nrl knockout zebrafish model with altered photoreceptor composition and progressive retinal degeneration. PLoS Genetics. 18:e1009841

Liang, Q., Afriyie, G., Chen, Z., Xu, Z., Dong, Z., Wang, Z., Guo, Y. (2021) Analysis of Opsin Gene Family of Crimson Snapper (Lutjanus erythropterus). Gene. 807:145960

Lourenço, R., Brandão, A.S., Borbinha, J., Gorgulho, R., Jacinto, A. (2021) Yap Regulates Müller Glia Reprogramming in Damaged Zebrafish Retinas. Frontiers in cell and developmental biology. 9:667796

Ogawa, Y., Corbo, J.C. (2021) Partitioning of gene expression among zebrafish photoreceptor subtypes. Scientific Reports. 11:17340

Ogawa, Y., Shiraki, T., Fukada, Y., Kojima, D. (2021) Foxq2 determines blue cone identity in zebrafish. Science advances. 7:eabi9784

Yoshimatsu, T., Bartel, P., Schröder, C., Janiak, F.K., St-Pierre, F., Berens, P., Baden, T. (2021) Ancestral circuits for vertebrate color vision emerge at the first retinal synapse. Science advances. 7:eabj6815

Balay, S.D., Widen, S.A., Waskiewicz, A.J. (2020) Analysis of zebrafish Cryptochrome 2 and 4 expression in UV cone photoreceptors. Gene expression patterns : GEP. 35:119100

Coomer, C.E., Wilson, S.G., Titialii-Torres, K.F., Bills, J.D., Krueger, L.A., Petersen, R.A., Turnbaugh, E.M., Janesch, E.L., Morris, A.C. (2020) Her9/Hes4 is required for retinal photoreceptor development, maintenance, and survival. Scientific Reports. 10:11316

Hu, C., Tang, L., Liu, M., Lam, P.K.S., Lam, J.C.W., Chen, L. (2020) Probiotic modulation of perfluorobutanesulfonate toxicity in zebrafish: Disturbances in retinoid metabolism and visual physiology. Chemosphere. 258:127409

Nadolski, N.J., Balay, S.D., Wong, C.X.L., Waskiewicz, A.J., Hocking, J.C. (2020) Abnormal Cone and Rod Photoreceptor Morphogenesis in gdf6a Mutant Zebrafish. Investigative ophthalmology & visual science. 61:9

Safarian, N., Whyte-Fagundes, P., Zoidl, C., Grigull, J., Zoidl, G. (2020) Visuomotor deficiency in panx1a knockout zebrafish is linked to dopaminergic signaling. Scientific Reports. 10:9538

Shi, W.J., Huang, G.Y., Jiang, Y.X., Ma, D.D., Chen, H.X., Huang, M.Z., Hou, L.P., Xie, L., Ying, G.G. (2020) Medroxyprogesterone acetate affects eye growth and the transcription of associated genes in zebrafish. Ecotoxicology and environmental safety. 193:110371

Zhang, R., Silic, M.R., Schaber, A., Wasel, O., Freeman, J.L., Sepúlveda, M.S. (2020) Exposure route affects the distribution and toxicity of polystyrene nanoplastics in zebrafish. The Science of the total environment. 724:138065

Zhao, G., Sun, H., Zhang, T., Liu, J.X. (2020) Copper induce zebrafish retinal developmental defects via triggering stresses and apoptosis. Cell communication and signaling : CCS. 18:45

Lu, Z., Hu, X., Reilly, J., Jia, D., Liu, F., Yu, S., Liu, X., Xie, S., Qu, Z., Qin, Y., Huang, Y., Lv, Y., Li, J., Gao, P., Wong, F., Shu, X., Tang, Z., Liu, M. (2019) Deletion of the transmembrane protein Prom1b in zebrafish disrupts outer-segment morphogenesis and causes photoreceptor degeneration. The Journal of biological chemistry. 294(38):13953-13963

Mackin, R.D., Frey, R.A., Gutierrez, C., Farre, A.A., Kawamura, S., Mitchell, D.M., Stenkamp, D.L. (2019) Endocrine regulation of multichromatic color vision. Proceedings of the National Academy of Sciences of the United States of America. 116(34):16882-16891

Ogawa, Y., Shiraki, T., Asano, Y., Muto, A., Kawakami, K., Suzuki, Y., Kojima, D., Fukada, Y. (2019) Six6 and Six7 coordinately regulate expression of middle-wavelength opsins in zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 116(10):4651-4660

Qu, Z., Yimer, T.A., Xie, S., Wong, F., Yu, S., Liu, X., Han, S., Ma, J., Lu, Z., Hu, X., Qin, Y., Huang, Y., Lv, Y., Li, J., Tang, Z., Liu, F., Liu, M. (2019) Knocking out lca5 in zebrafish causes cone-rod dystrophy due to impaired outer segment protein trafficking. Biochimica et biophysica acta. Molecular basis of disease. 1865(10):2694-2705

Shi, Q., Tsui, M.M.P., Hu, C., Lam, J.C.W., Zhou, B., Chen, L. (2019) Acute exposure to triphenyl phosphate (TPhP) disturbs ocular development and muscular organization in zebrafish larvae. Ecotoxicology and environmental safety. 179:119-126

Shi, Q., Wang, Z., Chen, L., Fu, J., Han, J., Hu, B., Zhou, B. (2019) Optical toxicity of triphenyl phosphate in zebrafish larvae. Aquatic toxicology (Amsterdam, Netherlands). 210:139-147

Shi, W.J., Jiang, Y.X., Ma, D.D., Huang, G.Y., Xie, L., Chen, H.X., Huang, M.Z., Ying, G.G. (2019) Dydrogesterone affects the transcription of genes in visual cycle and circadian rhythm network in the eye of zebrafish. Ecotoxicology and environmental safety. 183:109556

Xie, S., Han, S., Qu, Z., Liu, F., Li, J., Yu, S., Reilly, J., Tu, J., Liu, X., Lu, Z., Hu, X., Yimer, T.A., Qin, Y., Huang, Y., Lv, Y., Jiang, T., Shu, X., Tang, Z., Jia, H., Wong, F., Liu, M. (2019) Knockout of Nr2e3 prevents rod photoreceptor differentiation and leads to selective L-/M-cone photoreceptor degeneration in zebrafish. Biochimica et biophysica acta. Molecular basis of disease. 1865(6):1273-1283

Cai, S., Chen, Y., Shang, Y., Cui, J., Li, Z., Li, Y. (2018) Knockout of zebrafish interleukin 7 receptor (IL7R) by the CRISPR/Cas9 system delays retinal neurodevelopment. Cell Death & Disease. 9:273

Slijkerman, R., Goloborodko, A., Broekman, S., de Vrieze, E., Hetterschijt, L., Peters, T., Gerits, M., Kremer, H., van Wijk, E. (2018) Poor Splice-Site Recognition in a Humanized Zebrafish Knockin Model for the Recurrent Deep-Intronic c.7595-2144A>G Mutation in USH2A. Zebrafish. 15(6):597-609

Sun, C., Mitchell, D.M., Stenkamp, D.L. (2018) Isolation of photoreceptors from mature, developing, and regenerated zebrafish retinas, and of microglia/macrophages from regenerating zebrafish retinas. Experimental Eye Research. 177:130-144

Chen, Q., Gundlach, M., Yang, S., Jiang, J., Velki, M., Yin, D., Hollert, H. (2017) Quantitative investigation of the mechanisms of microplastics and nanoplastics toward zebrafish larvae locomotor activity. The Science of the total environment. 584-585:1022-1031

Lewis, T.R., Kundinger, S.R., Pavlovich, A.L., Bostrom, J.R., Link, B.A., Besharse, J.C. (2017) Cos2/Kif7 and OSM-3/Kif17 Regulate Onset of Outer Segment Development in Zebrafish Photoreceptors Through Distinct Mechanisms. Developmental Biology. 425(2):176-190

Liu, W., Zhang, X., Wei, P., Tian, H., Wang, W., Ru, S. (2017) Long-term exposure to bisphenol S damages the visual system and reduces the tracking capability of male zebrafish (Danio rerio). Journal of applied toxicology : JAT. 38(2):248-258

Noel, N.C.L., Allison, W.T. (2017) Connectivity of cone photoreceptor telodendria in the zebrafish retina. The Journal of comparative neurology. 526(4):609-625

Zhang, L., Zhang, X., Zhang, G., Pang, C.P., Leung, Y.F., Zhang, M., Zhong, W. (2017) Expression profiling of the retina of pde6c, a zebrafish model of retinal degeneration. Scientific data. 4:170182

Hagerman, G.F., Noel, N.C., Cao, S.Y., DuVal, M.G., Oel, A.P., Allison, W.T. (2016) Rapid Recovery of Visual Function Associated with Blue Cone Ablation in Zebrafish. PLoS One. 11:e0166932

Houbrechts, A.M., Vergauwen, L., Bagci, E., Van Houcke, J., Heijlen, M., Kulemeka, B., Hyde, D.R., Knapen, D., Darras, V.M. (2016) Deiodinase knockdown affects zebrafish eye development at the level of gene expression, morphology and function. Molecular and Cellular Endocrinology. 424:81-93

Kim, J.W., Yang, H.J., Oel, A.P., Brooks, M.J., Jia, L., Plachetzki, D.C., Li, W., Allison, W.T., Swaroop, A. (2016) Recruitment of Rod Photoreceptors from Short-Wavelength-Sensitive Cones during the Evolution of Nocturnal Vision in Mammals. Developmental Cell. 37:520-532

Yoshimatsu, T., D'Orazi, F.D., Gamlin, C.R., Suzuki, S.C., Suli, A., Kimelman, D., Raible, D.W., Wong, R.O. (2016) Presynaptic partner selection during retinal circuit reassembly varies with timing of neuronal regeneration in vivo. Nature communications. 7:10590

Yu, M., Liu, Y., Li, J., Natale, B.N., Cao, S., Wang, D., Amack, J.D., Hu, H. (2016) Eyes shut homolog is required for maintaining the ciliary pocket and survival of photoreceptors in zebrafish. Biology Open. 5(11):1662-1673

Zhao, Y., Fent, K. (2016) Progestins alter photo-transduction cascade and circadian rhythm network in eyes of zebrafish (Danio rerio). Scientific Reports. 6:21559

Davies, W.I., Tamai, T.K., Zheng, L., Fu, J.K., Rihel, J., Foster, R.G., Whitmore, D., Hankins, M.W. (2015) An extended family of novel vertebrate photopigments is widely expressed and displays a diversity of function. Genome research. 25(11):1666-79

Koyanagi, M., Wada, S., Kawano-Yamashita, E., Hara, Y., Kuraku, S., Kosaka, S., Kawakami, K., Tamotsu, S., Tsukamoto, H., Shichida, Y., Terakita, A. (2015) Diversification of non-visual photopigment parapinopsin in spectral sensitivity for diverse pineal functions. BMC Biology. 13:73

Li, W.H., Zhou, L., Li, Z., Wang, Y., Shi, J.T., Yang, Y.J., Gui, J.F. (2015) Zebrafish Lbh-like Is Required for Otx2-mediated Photoreceptor Differentiation. International journal of biological sciences. 11(6):688-700

Ogawa, Y., Shiraki, T., Kojima, D., Fukada, Y. (2015) Homeobox transcription factor Six7 governs expression of green opsin genes in zebrafish. Proceedings. Biological sciences. 282(1812):20150659

Zhang, X., Hong, Q., Yang, L., Zhang, M., Guo, X., Chi, X., Tong, M. (2015) PCB1254 exposure contributes to the abnormalities of optomotor responses and influence of the photoreceptor cell development in zebrafish larvae. Ecotoxicology and environmental safety. 118:133-138

Duval, M.G., Oel, A.P., Allison, W.T. (2014) gdf6a is required for cone photoreceptor subtype differentiation and for the actions of tbx2b in determining rod versus cone photoreceptor fate. PLoS One. 9:e92991

Li, M., Wang, X., Zhu, J., Zhu, S., Hu, X., Zhu, C., Guo, X., Yu, Z., Han, S. (2014) Toxic effects of polychlorinated biphenyls on cardiac development in zebrafish. Molecular biology reports. 41(12):7973-83

Niu, X., Hong, J., Zheng, X., Melville, D.B., Knapik, E.W., Meng, A., Peng, J. (2014) The Nuclear Pore Complex Function of Sec13 Protein Is Required for Cell Survival during Retinal Development. The Journal of biological chemistry. 289:11971-85

Raymond, P.A., Colvin, S.M., Jabeen, Z., Nagashima, M., Barthel, L.K., Hadidjojo, J., Popova, L., Pejaver, V.R., and Lubensky, D.K. (2014) Patterning the cone mosaic array in zebrafish retina requires specification of ultraviolet-sensitive cones. PLoS One. 9(1):e85325

Yoshimatsu, T., Williams, P.R., D'Orazi, F.D., Suzuki, S.C., Fadool, J.M., Allison, W.T., Raymond, P.A., Wong, R.O. (2014) Transmission from the dominant input shapes the stereotypic ratio of photoreceptor inputs onto horizontal cells. Nature communications. 5:3699

Chen, L., Huang, Y., Huang, C., Hu, B., Hu, C., and Zhou, B. (2013) Acute exposure to DE-71 causes alterations in visual behavior in zebrafish larvae. Environmental toxicology and chemistry. 32(6):1370-1375

Duval, M.G., Chung, H., Lehmann, O.J., and Allison, W.T. (2013) Longitudinal fluorescent observation of retinal degeneration and regeneration in zebrafish using fundus lens imaging. Molecular Vision. 19:1082-1095

Fraser, B., Duval, M.G., Wang, H., and Allison, W.T. (2013) Regeneration of cone photoreceptors when cell ablation is primarily restricted to a particular cone subtype. PLoS One. 8(1):e55410

Konzer, A., Ruhs, A., Braun, H., Jungblut, B., Braun, T., and Krueger, M. (2013) Stable Isotope Labeling in Zebrafish Allows in Vivo Monitoring of Cardiac Morphogenesis. Molecular & cellular proteomics : MCP. 12(6):1502-12

Lagman, D., Ocampo Daza, D., Widmark, J., Abalo, X.M., Sundström, G., and Larhammar, D. (2013) The vertebrate ancestral repertoire of visual opsins, transducin alpha subunits and oxytocin/vasopressin receptors was established by duplication of their shared genomic region in the two rounds of early vertebrate genome duplications. BMC Evolutionary Biology. 13:238

Weber, A., Hochmann, S., Cimalla, P., Gärtner, M., Kuscha, V., Hans, S., Geffarth, M., Kaslin, J., Koch, E., and Brand, M. (2013) Characterization of light lesion paradigms and optical coherence tomography as tools to study adult retina regeneration in zebrafish. PLoS One. 8(11):e80483

Xu, T., Chen, L., Hu, C., and Zhou, B. (2013) Effects of acute exposure to polybrominated diphenyl ethers on retinoid signaling in zebrafish larvae. Environmental Toxicology and Pharmacology. 35(1):13-20

Zhang, L., Cho, J., Ptak, D., and Leung, Y.F. (2013) The Role of egr1 in Early Zebrafish Retinogenesis. PLoS One. 8(2):e56108

Boisset, G., and Schorderet, D.F. (2012) Zebrafish hmx1 promotes retinogenesis. Experimental Eye Research. 105:34-42

Chen, J., Huang, C., Truong, L., La Du, J., Tilton, S.C., Waters, K.M., Lin, K., Tanguay, R.L., and Dong, Q. (2012) Early life stage trimethyltin exposure induces ADP-ribosylation factor expression and perturbs the vascular system in zebrafish. Toxicology. 302(2-3):129-139

Salbreux, G., Barthel, L.K., Raymond, P.A., and Lubensky, D.K. (2012) Coupling mechanical deformations and planar cell polarity to create regular patterns in the zebrafish retina. PLoS Computational Biology. 8(8):e1002618

Zhang, Y., Yang, Y., Trujillo, C., Zhong, W., and Leung, Y.F. (2012) The Expression of irx7 in the Inner Nuclear Layer of Zebrafish Retina Is Essential for a Proper Retinal Development and Lamination. PLoS One. 7(4):e36145

Bachmann-Gagescu, R., Phelps, I.G., Stearns, G., Link, B.A., Brockerhoff, S.E., Moens, C.B., and Doherty, D. (2011) The Ciliopathy Gene cc2d2a controls Zebrafish Photoreceptor Outer Segment Development Through a Role in Rab8-dependent Vesicle Trafficking. Human molecular genetics. 20(20):4041-55

Davies, W.I., Zheng, L., Hughes, S., Tamai, T.K., Turton, M., Halford, S., Foster, R.G., Whitmore, D., and Hankins, M.W. (2011) Functional diversity of melanopsins and their global expression in the teleost retina. Cellular and molecular life sciences : CMLS. 68(24):4115-32

Morrissey, M.E., Shelton, S., Brockerhoff, S.E., Hurley, J.B., and Kennedy, B.N. (2011) PRE-1, a cis element sufficient to enhance cone- and rod- specific expression in differentiating zebrafish photoreceptors. BMC Developmental Biology. 11:3

Morrow, J.M., Lazic, S., and Chang, B.S. (2011) A novel rhodopsin-like gene expressed in zebrafish retina. Visual neuroscience. 28(4):325-35

Murphy, T.R., Vihtelic, T.S., Ile, K.E., Watson, C.T., Willer, G.B., Gregg, R.G., Bankaitis, V.A., and Hyde, D.R. (2011) Phosphatidylinositol synthase is required for lens structural integrity and photoreceptor cell survival in the zebrafish eye. Experimental Eye Research. 93(4):460-74

Stevens, C.B., Cameron, D.A., and Stenkamp, D.L. (2011) Plasticity of photoreceptor-generating retinal progenitors revealed by prolonged retinoic acid exposure. BMC Developmental Biology. 11(1):51

Allison, W.T., Barthel, L.K., Skebo, K.M., Takechi, M., Kawamura, S., and Raymond, P.A. (2010) Ontogeny of cone photoreceptor mosaics in zebrafish. The Journal of comparative neurology. 518(20):4182-4195

Li, L., Nakaya, N., Chavali, V.R., Ma, Z., Jiao, X., Sieving, P.A., Riazuddin, S., Tomarev, S.I., Ayyagari, R., Riazuddin, S.A., and Hejtmancik, J.F. (2010) A Mutation in ZNF513, a Putative Regulator of Photoreceptor Development, Causes Autosomal-Recessive Retinitis Pigmentosa. American journal of human genetics. 87(3):400-409

Rai, K., Jafri, I.F., Chidester, S., James, S.R., Karpf, A.R., Cairns, B.R., and Jones, D.A. (2010) Dnmt3 and G9a cooperate for tissue-specific development in zebrafish. The Journal of biological chemistry. 285(6):4110-4121

Tsujimura, T., Hosoya, T., and Kawamura, S. (2010) A single enhancer regulating the differential expression of duplicated red-sensitive opsin genes in zebrafish. PLoS Genetics. 6(12):e1001245

Wong, L., Weadick, C.J., Kuo, C., Chang, B.S., and Tropepe, V. (2010) Duplicate dmbx1 genes regulate progenitor cell cycle and differentiation during zebrafish midbrain and retinal development. BMC Developmental Biology. 10:100

Alvarez-Delfin, K., Morris, A.C., Snelson, C.D., Gamse, J.T., Gupta, T., Marlow, F.L., Mullins, M.C., Burgess, H.A., Granato, M., and Fadool, J.M. (2009) Tbx2b is required for ultraviolet photoreceptor cell specification during zebrafish retinal development. Proceedings of the National Academy of Sciences of the United States of America. 106(6):2023-2028

Nelson, S.M., Park, L., and Stenkamp, D.L. (2009) Retinal homeobox 1 is required for retinal neurogenesis and photoreceptor differentiation in embryonic zebrafish. Developmental Biology. 328(1):24-39

Krock, B.L., and Perkins, B.D. (2008) The intraflagellar transport protein IFT57 is required for cilia maintenance and regulates IFT-particle-kinesin-II dissociation in vertebrate photoreceptors. Journal of Cell Science. 121(Pt 11):1907-1915

Nelson, S.M., Frey, R.A., Wardwell, S.L., and Stenkamp, D.L. (2008) The developmental sequence of gene expression within the rod photoreceptor lineage in embryonic zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 237(10):2903-2917

Stenkamp, D.L., Satterfield, R., Muhunthan, K., Sherpa, T., Vihtelic, T.S., and Cameron, D. (2008) Age-Related Cone Abnormalities in Zebrafish with Genetic Lesions in Sonic Hedgehog. Investigative ophthalmology & visual science. 49(10):4631-4640

Takechi, M., Seno, S., and Kawamura, S. (2008) Identification of cis-acting elements repressing blue opsin expression in zebrafish UV cones and pineal cells. The Journal of biological chemistry. 283(46):31625-31632

Thummel, R., Kassen, S.C., Montgomery, J.E., Enright, J.M., and Hyde, D.R. (2008) Inhibition of Müller glial cell division blocks regeneration of the light-damaged zebrafish retina. Developmental Neurobiology. 68(3):392-408

Krock, B.L., Bilotta, J., and Perkins, B.D. (2007) Noncell-autonomous photoreceptor degeneration in a zebrafish model of choroideremia. Proceedings of the National Academy of Sciences of the United States of America. 104(11):4600-4605

Trede, N.S., Medenbach, J., Damianov, A., Hung, L.H., Weber, G.J., Paw, B.H., Zhou, Y., Hersey, C., Zapata, A., Keefe, M., Barut, B.A., Stuart, A.B., Katz, T., Amemiya, C.T., Zon, L.I., and Bindereif, A. (2007) Network of coregulated spliceosome components revealed by zebrafish mutant in recycling factor p110. Proceedings of the National Academy of Sciences of the United States of America. 104(16):6608-6613

Tsujimura, T., Chinen, A., and Kawamura, S. (2007) Identification of a locus control region for quadruplicated green-sensitive opsin genes in zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 104(31):12813-12818

Ziv, L., Tovin, A., Strasser, D., and Gothilf, Y. (2007) Spectral sensitivity of melatonin suppression in the zebrafish pineal gland. Experimental Eye Research. 84(1):92-99

Raymond, P.A., Barthel, L.K., Bernardos, R.L., and Perkowski, J.J. (2006) Molecular characterization of retinal stem cells and their niches in adult zebrafish. BMC Developmental Biology. 6:36

Bernardos, R.L., Lentz, S.I., Wolfe, M.S., and Raymond, P.A. (2005) Notch-Delta signaling is required for spatial patterning and Muller glia differentiation in the zebrafish retina. Developmental Biology. 278(2):381-395

Chinen, A., Matsumoto, Y., and Kawamura, S. (2005) Spectral differentiation of blue opsins between phylogenetically close but ecologically distant goldfish and zebrafish. The Journal of biological chemistry. 280(10):9460-9466

Morris, A.C., Schroeter, E.H., Bilotta, J., Wong, R.O., and Fadool, J.M. (2005) Cone Survival Despite Rod Degeneration in XOPS-mCFP Transgenic Zebrafish. Investigative ophthalmology & visual science. 46(12):4762-4771

Prabhudesai, S.N., Cameron, D.A., and Stenkamp, D.L. (2005) Targeted effects of retinoic acid signaling upon photoreceptor development in zebrafish. Developmental Biology. 287(1):157-167

Takechi, M., and Kawamura, S. (2005) Temporal and spatial changes in the expression pattern of multiple red and green subtype opsin genes during zebrafish development. The Journal of experimental biology. 208(Pt.7):1337-1345

Vihtelic, T.S., Yamamoto, Y., Springer, S.S., Jeffery, W.R., and Hyde, D.R. (2005) Lens opacity and photoreceptor degeneration in the zebrafish lens opaque mutant. Developmental Dynamics : an official publication of the American Association of Anatomists. 233(1):52-65

Kennedy, M.J., Dunn, F.A., and Hurley, J.B. (2004) Visual pigment phosphorylation but not transducin translocation can contribute to light adaptation in zebrafish cones. Neuron. 41(6):915-928

Luo, W., Williams, J., Smallwood, P.M., Touchman, J.W., Roman, L.M., and Nathans, J. (2004) Proximal and distal sequences control UV cone pigment gene expression in transgenic zebrafish. The Journal of biological chemistry. 279(18):19286-19293

Raymond, P.A., and Barthel, L.K. (2004) A moving wave patterns the cone photoreceptor mosaic array in the zebrafish retina. The International journal of developmental biology. 48(8-9):935-945

Shen, Y.C., and Raymond, P.A. (2004) Zebrafish cone-rod (crx) homeobox gene promotes retinogenesis. Developmental Biology. 269(1):237-251

Chinen, A., Hamaoka, T., Yamada, Y., and Kawamura, S. (2003) Gene duplication and spectral diversification of cone visual pigments of zebrafish. Genetics. 163(2):663-675

Bellingham, J., Whitmore, D., Philp, A.R., Wells, D.J., and Foster, R.G. (2002) Zebrafish melanopsin: isolation, tissue localisation and phylogenetic position. Brain research. Molecular brain research. 107(2):128-136

Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A. (2002) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 99(26):16899-903

Doerre, G. and Malicki, J. (2001) A mutation of early photoreceptor development, mikre oko, reveals cell-cell interactions involved in the survival and differentiation of zebrafish photoreceptors. The Journal of neuroscience : the official journal of the Society for Neuroscience. 21(17):6745-6757

Helvik, J.V., Drivenes, O., Naess, T.H., Fjose, A., Seo, H.C. (2001) Molecular cloning and characterization of five opsin genes from the marine flatfish Atlantic halibut (Hippoglossus hippoglossus). Visual neuroscience. 18(5):767-780

Guo, S., Yamaguchi, Y., Schilbach, S., Wada, T., Lee, J., Goddard, A., French, D., Handa, H., and Rosenthal, A. (2000) A regulator of transcriptional elongation controls vertebrate neuronal development. Nature. 408(6810):366-369

Vihtelic, T.S., Doro, C.J., and Hyde, D.R. (1999) Cloning and characterization of six zebrafish photoreceptor opsin cDNAs and immunolocalization of their corresponding proteins. Visual neuroscience. 16:571-585

Becker, T.S., Burgess, S.M., Amsterdam, A.H., Allende, M.L., and Hopkins, N. (1998) not really finished is crucial for development of the zebrafish outer retina and encodes a transcription factor highly homologous to human Nuclear Respiratory Factor-1 and avian Initiation Binding Repressor. Development (Cambridge, England). 125:4369-4378

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Additional Citations (18):

Zebrafish Nomenclature Committee (2023) Nomenclature Data Curation (2023). Nomenclature Committee Submission.

ZFIN Staff (2023) Automated Curation of UniProt Database Links. Automated Data Submission.

ZFIN Staff (2020) Addition of links from ZFIN to Expression Atlas. Semi-automated Curation.

ZFIN Staff (2017) Curation of PANTHER Gene IDs. Automated Data Submission.

ZFIN Staff (2017) Curation of Alliance of Genome Resources Database Links. Automated Data Submission.

Busch-Nentwich, E., Kettleborough, R., Dooley, C. M., Scahill, C., Sealy, I., White, R., Herd, C., Mehroke, S., Wali, N., Carruthers, S., Hall, A., Collins, J., Gibbons, R., Pusztai, Z., Clark, R., and Stemple, D.L. (2013) Sanger Institute Zebrafish Mutation Project mutant data submission. ZFIN Direct Data Submission.

ZFIN Staff (2013) Semi-automated association of ENSDARG identifiers with ZFIN genes for the ZMP project. Semi-automated Curation.

UniProt-GOA (2011) Gene Ontology annotation based on the automatic assignment of UniProtKB Subcellular Location terms in UniProtKB/TrEMBL entries. Manually curated data.

Gaudet, P., Livstone, M., Thomas, P., The Reference Genome Project (2010) Annotation inferences using phylogenetic trees. Automated Data Submission.

GOA curators, UniProt curators (2007) Gene Ontology annotation based on Swiss-Prot Subcellular Location vocabulary mapping. Manually curated data.

ZFIN Staff (2007) Microarray Expression to Gene Association in ZFIN. Semi-automated Curation.

ZFIN Staff (2006) Curation of Ensembl Database Links. Automated Data Submission.

Thisse, B., Thisse, C. (2004) Fast Release Clones: A High Throughput Expression Analysis. ZFIN Direct Data Submission.

ZFIN Staff (2004) ZGC Data Curation and Association in ZFIN by ZFIN Staff. Semi-automated Curation.

ZFIN Staff (2003) Curation of VEGA Database Links. Automated Data Submission.

ZFIN Staff (2002) Gene Ontology Annotation Through Association of UniProt Keywords with GO Terms. Automated Data Submission.

ZFIN Staff (2002) Curation of NCBI Gene Data Via Shared RNA Sequence IDs. Automated Data Submission.

ZFIN Staff (2002) Gene Ontology Annotation Through Association of InterPro Records with GO Terms. Automated Data Submission.