ZFIN

ZFIN ID: ZDB-GENE-990415-272

ZFIN ID: ZDB-GENE-990415-272

CITATIONS (270 total)

Gene Name:	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
Gene Symbol:	ddx4

Chu, W.K., Huang, S.C., Chang, C.F., Wu, J.L., Gong, H.Y. (2023) Infertility control of transgenic fluorescent zebrafish with targeted mutagenesis of the dnd1 gene by CRISPR/Cas9 genome editing. Frontiers in genetics. 14:10292001029200

Li, W., Liu, W., Mo, C., Yi, M., Gui, J. (2023) Two Novel lncRNAs Regulate Primordial Germ Cell Development in Zebrafish. Cells. 12(4):

Annus, T., Müller, D., Jezsó, B., Ullaga, G., Németh, B., Harami, G.M., Orbán, L., Kovács, M., Varga, M. (2022) Bloom syndrome helicase contributes to germ line development and longevity in zebrafish. Cell Death & Disease. 13:363

Bogoch, Y., Jamieson-Lucy, A., Vejnar, C.E., Levy, K., Giraldez, A.J., Mullins, M.C., Elkouby, Y.M. (2022) Stage Specific Transcriptomic Analysis and Database for Zebrafish Oogenesis. Frontiers in cell and developmental biology. 10:826892

Liu, Y., Kassack, M.E., McFaul, M.E., Christensen, L.N., Siebert, S., Wyatt, S.R., Kamei, C.N., Horst, S., Arroyo, N., Drummond, I.A., Juliano, C.E., Draper, B.W. (2022) Single-cell transcriptome reveals insights into the development and function of the zebrafish ovary. eLIFE. 11:

Lukowicz-Bedford, R.M., Farnsworth, D.R., Miller, A.C. (2022) Connexinplexity: The spatial and temporal expression of connexin genes during vertebrate organogenesis. G3 (Bethesda). 12(5):

Ma, J., Shao, X., Geng, F., Liang, S., Yu, C., Zhang, R. (2022) Ercc2/Xpd deficiency results in failure of digestive organ growth in zebrafish with elevated nucleolar stress. iScience. 25:104957

Ma, J., Tang, D., Gao, P., Liang, S., Zhang, R. (2022) Knockout of Shelterin subunit genes in zebrafish results in distinct outcomes. Biochemical and Biophysical Research Communications. 617:22-29

Naraine, R., Iegorova, V., Abaffy, P., Franek, R., Soukup, V., Psenicka, M., Sindelka, R. (2022) Evolutionary conservation of maternal RNA localization in fishes and amphibians revealed by TOMO-Seq. Developmental Biology. 489:146-160

Tao, B., Hu, H., Chen, J., Chen, L., Luo, D., Sun, Y., Ge, F., Zhu, Z., Trudeau, V.L., Hu, W. (2022) Sinhcaf-dependent histone deacetylation is essential for primordial germ cell specification. EMBO reports. 23(6):e54387

van Gelderen, T.A., Montfort, J., Álvarez-Dios, J.A., Thermes, V., Piferrer, F., Bobe, J., Ribas, L. (2022) Deciphering sex-specific miRNAs as heat-recorders in zebrafish. Scientific Reports. 12:18722

Zhang, R., Tu, Y.X., Ye, D., Gu, Z., Chen, Z.X., Sun, Y. (2022) A Germline-Specific Regulator of Mitochondrial Fusion is Required for Maintenance and Differentiation of Germline Stem and Progenitor Cells. Advanced science (Weinheim, Baden-Wurttemberg, Germany). 9(36):e2203631

Bertho, S., Clapp, M., Banisch, T.U., Bandemer, J., Raz, E., Marlow, F.L. (2021) Zebrafish dazl regulates cystogenesis and germline stem cell specification during the primordial germ cell to germline stem cell transition. Development (Cambridge, England). 148(7)

Carver, J.J., He, Y., Zhu, Y. (2021) Delay in primordial germ cell migration in adamts9 knockout zebrafish. Scientific Reports. 11:8545

D'Orazio, F.M., Balwierz, P.J., González, A.J., Guo, Y., Hernández-Rodríguez, B., Wheatley, L., Jasiulewicz, A., Hadzhiev, Y., Vaquerizas, J.M., Cairns, B., Lenhard, B., Müller, F. (2021) Germ cell differentiation requires Tdrd7-dependent chromatin and transcriptome reprogramming marked by germ plasm relocalization. Developmental Cell. 56(5):641-656.e5

Dai, X., Cheng, X., Huang, J., Gao, Y., Wang, D., Feng, Z., Zhai, G., Lou, Q., He, J., Wang, Z., Yin, Z. (2021) Rbm46, a novel germ cell specific factor, modulates meiotic progression and spermatogenesis. Biology of reproduction. 104(5):1139-1153

Hansen, C.L., Chamberlain, T.J., Trevena, R.L., Kurek, J.E., Pelegri, F. (2021) Conserved germ plasm characteristics across the Danio and Devario lineages. Genesis (New York, N.Y. : 2000). 59(10):e23452

Liu, X., Xie, X., Liu, H. (2021) Effects of Diethylstilbestrol on Zebrafish Gonad Development and Endocrine Disruption Mechanism. Biomolecules. 11(7):

Perera, R.P., Shaikhqasem, A., Rostam, N., Dickmanns, A., Ficner, R., Tittmann, K., Dosch, R. (2021) Bucky Ball Is a Novel Zebrafish Vasa ATPase Activator. Biomolecules. 11(10):

Ullah, F., Rauf, W., Khan, K., Khan, S., Bell, K.M., de Oliveira, V.C., Tariq, M., Bakhshalizadeh, S., Touraine, P., Katsanis, N., Sinclair, A., He, S., Tucker, E.J., Baig, S.M., Davis, E.E. (2021) A recessive variant in TFAM causes mtDNA depletion associated with primary ovarian insufficiency, seizures, intellectual disability and hearing loss. Human genetics. 140(12):1733-1751

Vong, Y.H., Sivashanmugam, L., Leech, R., Zaucker, A., Jones, A., Sampath, K. (2021) The RNA-binding protein Igf2bp3 is critical for embryonic and germline development in zebrafish. PLoS Genetics. 17:e1009667

Wang, X., Ma, X., Wei, G., Ma, W., Zhang, Z., Chen, X., Gao, L., Liu, Z., Yuan, Y., Yi, L., Wang, J., Tokumoto, T., Huang, J., Chen, D., Zhang, J., Liu, J. (2021) The Role of DNA Methylation Reprogramming during Sex Determination and Transition in Zebrafish. Genomics, proteomics & bioinformatics. 19(1):48-63

Yan, Y.L., Titus, T., Desvignes, T., BreMiller, R., Batzel, P., Sydes, J., Farnsworth, D., Dillon, D., Wegner, J., Phillips, J.B., Peirce, J., Dowd, J., Undiagnosed Diseases Network, Buck, C.L., Miller, A., Westerfield, M., Postlethwait, J.H. (2021) A fish with no sex: gonadal and adrenal functions partition between zebrafish NR5A1 co-orthologs. Genetics. 217(2)

Chang, C.T., Lee, Y.H., HuangFu, W.C., Liu, I.H. (2020) Cell-intrinsic Fgf signaling contributes to primordial germ cell homing in zebrafish. Theriogenology. 158:424-431

Farnsworth, D.R., Saunders, L.M., Miller, A.C. (2020) A single-cell transcriptome atlas for zebrafish development. Developmental Biology. 459(2):100-108

Fricke, T., Smalakyte, D., Lapinski, M., Pateria, A., Weige, C., Pastor, M., Kolano, A., Winata, C., Siksnys, V., Tamulaitis, G., Bochtler, M. (2020) Targeted RNA Knockdown by a Type III CRISPR-Cas Complex in Zebrafish. The CRISPR journal. 3:299-313

Fulton, T., Trivedi, V., Attardi, A., Anlas, K., Dingare, C., Arias, A.M., Steventon, B. (2020) Axis Specification in Zebrafish Is Robust to Cell Mixing and Reveals a Regulation of Pattern Formation by Morphogenesis. Current biology : CB. 30(15):2984-2994.e3

Joshi, I., Mohideen, H.S., Nazeer, R.A. (2020) A Meretrix meretrix visceral mass derived peptide inhibits lipopolysaccharide-stimulated responses in RAW264.7 cells and adult zebrafish model. International Immunopharmacology. 90:107140

Li, X., Zhang, F., Wu, N., Ye, D., Wang, Y., Zhang, X., Sun, Y., Zhang, Y.A. (2020) A critical role of foxp3a-positive regulatory T cells in maintaining immune homeostasis in zebrafish testis development. Journal of genetics and genomics = Yi chuan xue bao. 47(9):547-561

Liang, Y.Q., Jing, Z., Pan, C.G., Lin, Z., Zhen, Z., Hou, L., Dong, Z. (2020) The progestin norethindrone alters growth, reproductive histology and gene expression in zebrafish (Danio rerio). Chemosphere. 242:125285

Liu, D.J., Zhang, F., Chen, Y., Jin, Y., Zhang, Y.L., Chen, S.B., Xie, Y.Y., Huang, Q.H., Zhao, W.L., Wang, L., Xu, P.F., Chen, Z., Chen, S.J., Li, B., Zhang, A., Sun, X.J. (2020) setd2 knockout zebrafish is viable and fertile: differential and developmental stress-related requirements for Setd2 and histone H3K36 trimethylation in different vertebrate animals. Cell discovery. 6:72

Maeta, M., Kataoka, M., Nishiya, Y., Ogino, K., Kashima, M., Hirata, H. (2020) RNA polymerase II subunit D is essential for zebrafish development. Scientific Reports. 10:13213

Mo, A., Wang, X., Yuan, Y., Liu, C., Wang, J. (2020) Effects of waterborne exposure to environmentally relevant concentrations of selenite on reproductive function of female zebrafish: A life cycle assessment. Environmental pollution (Barking, Essex : 1987). 270:116237

Peng, L., Fu, W., Wu, X., He, S., Zhao, H., Liu, J., Liu, W., Xiao, Y. (2020) Bisexual Fertile Triploid Zebrafish (Danio rerio): a Rare Case. Marine biotechnology (New York, N.Y.). 22(3):443-455

Redl, S., de Jesus Domingues, A.M., Caspani, E., Möckel, S., Salvenmoser, W., Mendez-Lago, M., Ketting, R.F. (2020) Extensive nuclear gyration and pervasive non-genic transcription during primordial germ cell development in zebrafish. Development (Cambridge, England). 148(2):

Romano, S., Kaufman, O.H., Marlow, F.L. (2020) Loss of dmrt1 restores female fates in the absence of cyp19a1a but not rbpms2a/b. Development (Cambridge, England). 147(18):

Tsatskis, Y., Rosenfeld, R., Pearson, J.D., Boswell, C., Qu, Y., Kim, K., Fabian, L., Mohammad, A., Wang, X., Robson, M.I., Krchma, K., Wu, J., Gonçalves, J., Hodzic, D., Wu, S., Potter, D., Pelletier, L., Dunham, W.H., Gingras, A.C., Sun, Y., Meng, J., Godt, D., Schedl, T., Ciruna, B., Choi, K., Perry, J.R.B., Bremner, R., Schirmer, E.C., Brill, J.A., Jurisicova, A., McNeill, H. (2020) The NEMP family supports metazoan fertility and nuclear envelope stiffness. Science advances. 6:eabb4591

Wu, K., Song, W., Zhang, Z., Ge, W. (2020) Disruption of dmrt1 rescues the all-male phenotype of cyp19a1a mutant in zebrafish - A Novel insight into the roles of aromatase/estrogens in gonadal differentiation and early folliculogenesis. Development (Cambridge, England). 147(4):

Xie, Y., Huang, D., Chu, L., Liu, Y., Sun, X., Li, J., Cheng, C.H.K. (2020) Igf3 is essential for ovary differentiation in zebrafish†. Biology of reproduction. 104(3):589-601

Zhou, L., Wang, X., Du, S., Wang, Y., Zhao, H., Du, T., Yu, J., Wu, L., Song, Z., Liu, Q., Li, J. (2020) Germline Specific Expression of a vasa Homologue Gene in the Viviparous Fish Black Rockfish (Sebastes schlegelii) and Functional Analysis of the vasa 3' Untranslated Region. Frontiers in cell and developmental biology. 8:575788

Zhu, Z., Liu, Y., Xu, W., Liu, T., Xie, Y., Sham, K.W.Y., Sha, O., Cheng, C.H.K. (2020) Functional Characterization and Expression Analyses Show Differential Roles of Maternal and Zygotic Dgcr8 in Early Embryonic Development. Frontiers in genetics. 11:299

Blokhina, Y.P., Nguyen, A.D., Draper, B.W., Burgess, S.M. (2019) The telomere bouquet is a hub where meiotic double-strand breaks, synapsis, and stable homolog juxtaposition are coordinated in the zebrafish, Danio rerio. PLoS Genetics. 15:e1007730

Cao, Z., Mao, X., Luo, L. (2019) Germline Stem Cells Drive Ovary Regeneration in Zebrafish. Cell Reports. 26:1709-1717.e3

Crespo, D., Assis, L.H.C., van de Kant, H.J.G., de Waard, S., Safian, D., Lemos, M.S., Bogerd, J., Schulz, R.W. (2019) Endocrine and local signaling interact to regulate spermatogenesis in zebrafish: Follicle-stimulating hormone, retinoic acid and androgens. Development (Cambridge, England). 146(21):

Crespo, D., Lemos, M.S., Zhang, Y.T., Safian, D., Norberg, B., Bogerd, J., Schulz, R. (2019) PGE2 inhibits spermatogonia differentiation in zebrafish: interaction with Fsh and an androgen. The Journal of endocrinology. 244(1):163-175

Eno, C., Hansen, C.L., Pelegri, F. (2019) Aggregation, segregation and dispersal of homotypic germ plasm RNPs in the early zebrafish embryo. Developmental Dynamics : an official publication of the American Association of Anatomists. 248(4):306-318

Feng, K., Cui, X., Song, Y., Tao, B., Chen, J., Wang, J., Liu, S., Sun, Y., Zhu, Z., Trudeau, V.L., Hu, W. (2019) Gnrh3 regulates PGC proliferation and sex differentiation in developing zebrafish. Endocrinology. 161(1):

Franěk, R., Tichopád, T., Fučíková, M., Steinbach, C., Pšenička, M. (2019) Production and use of triploid zebrafish for surrogate reproduction. Theriogenology. 140:33-43

Hayashi, M., Ichida, K., Sadaie, S., Miwa, M., Fujihara, R., Nagasaka, Y., Yoshizaki, G. (2019) Establishment of novel monoclonal antibodies for identification of type A spermatogonia in teleosts1. Biology of reproduction. 101(2):478-491

Jin, Y., Liu, W., Xiang, Y., Zhang, W., Zhang, H., Jia, K., Yi, M. (2019) Maternal miR-202-5p is required for zebrafish primordial germ cell migration by protecting small GTPase Cdc42. Journal of molecular cell biology. 12(7):530-542

Marinović, Z., Li, Q., Lujić, J., Iwasaki, Y., Csenki, Z., Urbányi, B., Yoshizaki, G., Horváth, Á. (2019) Preservation of zebrafish genetic resources through testis cryopreservation and spermatogonia transplantation. Scientific Reports. 9:13861

Ortega-Recalde, O., Day, R.C., Gemmell, N.J., Hore, T.A. (2019) Zebrafish preserve global germline DNA methylation while sex-linked rDNA is amplified and demethylated during feminisation. Nature communications. 10:3053

Palasin, K., Uechi, T., Yoshihama, M., Srisowanna, N., Choijookhuu, N., Hishikawa, Y., Kenmochi, N., Chotigeat, W. (2019) Abnormal development of zebrafish after knockout and knockdown of ribosomal protein L10a. Scientific Reports. 9:18130

Rougeot, J., Chrispijn, N.D., Aben, M., Elurbe, D.M., Andralojc, K.M., Murphy, P.J., Jansen, P.W.T.C., Vermeulen, M., Cairns, B.R., Kamminga, L.M. (2019) Maintenance of spatial gene expression by Polycomb-mediated repression after formation of a vertebrate body plan. Development (Cambridge, England). 146(19):

Sanchez, A., Xu, L., Pierce, J.L., Lafin, J.T., Abe, D., Bagrodia, A., Frazier, A.L., Amatruda, J.F. (2019) Identification of testicular cancer driver genes by a cross-species comparative oncology approach. Andrology. 7(4):545-554

Santangeli, S., Consales, C., Pacchierotti, F., Habibi, H.R., Carnevali, O. (2019) Transgenerational effects of BPA on female reproduction. The Science of the total environment. 685:1294-1305

Song, W., Lu, H., Wu, K., Zhang, Z., Shuk-Wa Lau, E., Ge, W. (2019) Genetic evidence for estrogenicity of bisphenol A in zebrafish gonadal differentiation and its signalling mechanism. Journal of hazardous materials. 386:121886

Webster, K.A., Henke, K., Ingalls, D.M., Nahrin, A., Harris, M.P., Siegfried, K.R. (2019) Cyclin-dependent kinase 21 is a novel regulator of proliferation and meiosis in the male germ line of zebrafish. Reproduction (Cambridge, England). 157(4):383-398

Yan, Y.L., Batzel, P., Titus, T., Sydes, J., Desvignes, T., Bremiller, R., Draper, B., Postlethwait, J.H. (2019) A Hormone That Lost Its Receptor: Anti-Müllerian Hormone (AMH) in Zebrafish Gonad Development and Sex Determination. Genetics. 213(2):529-553

Ye, D., Zhu, L., Zhang, Q., Xiong, F., Wang, H., Wang, X., He, M., Zhu, Z., Sun, Y. (2019) Abundance of Early Embryonic Primordial Germ Cells Promotes Zebrafish Female Differentiation as Revealed by Lifetime Labeling of Germline. Marine biotechnology (New York, N.Y.). 21(2):217-228

Zhang, X., Li, X., Li, R., Zhang, Y., Li, Y., Li, S. (2019) Transcriptomic profile of early zebrafish PGCs by single cell sequencing. PLoS One. 14:e0220364

Zhou, L., Wang, X., Liu, Q., Xu, S., Zhao, H., Han, M., Wang, Y., Song, Z., Li, J. (2019) Visualization of Turbot (Scophthalmus maximus) Primordial Germ Cells in vivo Using Fluorescent Protein Mediated by the 3' Untranslated Region of nanos3 or vasa Gene. Marine biotechnology (New York, N.Y.). 21(5):671-682

Zhu, J., Zhang, D., Liu, X., Yu, G., Cai, X., Xu, C., Rong, F., Ouyang, G., Wang, J., Xiao, W. (2019) Zebrafish prmt5 arginine methyltransferase is essential for germ cell development. Development (Cambridge, England). 146(20):

Cheung, C.T., Patinote, A., Guiguen, Y., Bobe, J. (2018) foxr1 is a novel maternal-effect gene in fish that is required for early embryonic success.. PeerJ. 6:e5534

Eno, C., Gomez, T., Slusarski, D.C., Pelegri, F. (2018) Slow calcium waves mediate furrow microtubule reorganization and germ plasm compaction in the early zebrafish embryo. Development (Cambridge, England). 145(10)

Eno, C., Pelegri, F. (2018) Modulation of F-actin dynamics by maternal mid1ip1L controls germ plasm aggregation and furrow recruitment in the zebrafish embryo. Development (Cambridge, England). 145(10)

Jin, Y.N., Schlueter, P.J., Jurisch-Yaksi, N., Lam, P.Y., Jin, S., Hwang, W.Y., Yeh, J.J., Yoshigi, M., Ong, S.E., Schenone, M., Hartigan, C.R., Carr, S.A., Peterson, R.T. (2018) Noncanonical translation via deadenylated 3' UTRs maintains primordial germ cells. Nature Chemical Biology. 14(9):844-852

Kaufman, O.H., Lee, K., Martin, M., Rothhämel, S., Marlow, F.L. (2018) rbpms2 functions in Balbiani body architecture and ovary fate. PLoS Genetics. 14:e1007489

Kim, O.T.P., Nguyen, P.T., Shoguchi, E., Hisata, K., Vo, T.T.B., Inoue, J., Shinzato, C., Le, B.T.N., Nishitsuji, K., Kanda, M., Nguyen, V.H., Nong, H.V., Satoh, N. (2018) A draft genome of the striped catfish, Pangasianodon hypophthalmus, for comparative analysis of genes relevant to development and a resource for aquaculture improvement. BMC Genomics. 19:733

Kossack, M.E., High, S.K., Hopton, R.E., Yan, Y.L., Postlethwait, J.H., Draper, B.W. (2018) Female Sex Development and Reproductive Duct Formation Depend on Wnt4a in Zebrafish. Genetics. 211(1):219-233

Krishnakumar, P., Riemer, S., Perera, R., Lingner, T., Goloborodko, A., Khalifa, H., Bontems, F., Kaufholz, F., El-Brolosy, M.A., Dosch, R. (2018) Functional equivalence of germ plasm organizers. PLoS Genetics. 14:e1007696

Liao, H., Chen, Y., Yulong, L., Xue, S., Liu, M., Lin, Z., Liu, Y., Chan, H.C., Zhang, X., Sun, H. (2018) CFTR is required for the migration of Primordial Germ Cells during zebrafish early embryogenesis. Reproduction (Cambridge, England). 156(3):261-268

Pradhan, A., Olsson, P.E. (2018) Germ cell depletion in zebrafish leads to incomplete masculinization of the brain. General and comparative endocrinology. 265:15-21

Qin, M., Zhang, Z., Song, W., Wong, Q.W., Chen, W., Shirgaonkar, N., Ge, W. (2018) Roles of Figla/figla in Juvenile Ovary Development and Follicle Formation during Zebrafish Gonadogenesis. Endocrinology. 159(11):3699-3722

Ricci, J.M.B., Martinez, E.R.M., Butzge, A.J., Doretto, L.B., Oliveira, M.A., Bombardelli, R.A., Bogerd, J., Nóbrega, R.H. (2018) Characterization of vasa homolog in a neotropical catfish, Jundiá (Rhamdia quelen): Molecular cloning and expression analysis during embryonic and larval development. Gene. 654:116-126

Roovers, E.F., Kaaij, L.J.T., Redl, S., Bronkhorst, A.W., Wiebrands, K., de Jesus Domingues, A.M., Huang, H.Y., Han, C.T., Riemer, S., Dosch, R., Salvenmoser, W., Grün, D., Butter, F., van Oudenaarden, A., Ketting, R.F. (2018) Tdrd6a Regulates the Aggregation of Buc into Functional Subcellular Compartments that Drive Germ Cell Specification. Developmental Cell. 46:285-301.e9

Saju, J.M., Hossain, M.S., Liew, W.C., Pradhan, A., Thevasagayam, N.M., Tan, L.S.E., Anand, A., Olsson, P.E., Orbán, L. (2018) Heat Shock Factor 5 Is Essential for Spermatogenesis in Zebrafish. Cell Reports. 25:3252-3261.e4

Shimizu, N., Matsuda, M. (2018) Identification of a Novel Zebrafish Mutant Line that Develops Testicular Germ Cell Tumors. Zebrafish. 16(1):15-28

Sun, J., Yan, L., Shen, W., Meng, A. (2018) Maternal Ybx1 safeguards zebrafish oocyte maturation and maternal-to-zygotic transition by repressing global translation. Development (Cambridge, England). 145(19):

Yu, G., Zhang, D., Liu, W., Wang, J., Liu, X., Zhou, C., Gui, J., Xiao, W. (2018) Zebrafish androgen receptor is required for spermatogenesis and maintenance of ovarian function. Oncotarget. 9:24320-24334

Zhou, L., Feng, Y., Wang, F., Dong, X., Jiang, L., Liu, C., Zhao, Q., Li, K. (2018) Generation of all-male-like sterile zebrafish by eliminating primordial germ cells at early development. Scientific Reports. 8:1834

Bayés, À., Collins, M.O., Reig-Viader, R., Gou, G., Goulding, D., Izquierdo, A., Choudhary, J.S., Emes, R.D., Grant, S.G. (2017) Evolution of complexity in the zebrafish synapse proteome. Nature communications. 8:14613

Dai, X., Shu, Y., Lou, Q., Tian, Q., Zhai, G., Song, J., Lu, S., Yu, H., He, J., Yin, Z. (2017) Tdrd12 Is Essential for Germ Cell Development and Maintenance in Zebrafish. International Journal of Molecular Sciences. 18(6)

Gross-Thebing, T., Yigit, S., Pfeiffer, J., Reichman-Fried, M., Bandemer, J., Ruckert, C., Rathmer, C., Goudarzi, M., Stehling, M., Tarbashevich, K., Seggewiss, J., Raz, E. (2017) The Vertebrate Protein Dead End Maintains Primordial Germ Cell Fate by Inhibiting Somatic Differentiation. Developmental Cell. 43:704-715.e5

Lee, S.L.J., Horsfield, J.A., Black, M.A., Rutherford, K., Fisher, A., Gemmell, N.J. (2017) Histological and transcriptomic effects of 17α-methyltestosterone on zebrafish gonad development. BMC Genomics. 18:557

Lee, S.L.J., Horsfield, J.A., Black, M.A., Rutherford, K., Gemmell, N.J. (2017) Identification of sex differences in zebrafish (Danio rerio) brains during early sexual differentiation and masculinisation using 17α-methyltestoterone. Biology of reproduction. 99(2):446-460

Leerberg, D.M., Sano, K., Draper, B.W. (2017) Fibroblast growth factor signaling is required for early somatic gonad development in zebrafish. PLoS Genetics. 13:e1006993

Li, Q., Fujii, W., Naito, K., Yoshizaki, G. (2017) Application of dead end-knockout zebrafish as recipients of germ cell transplantation. Molecular reproduction and development. 84(10):1100-1111

Lin, Q., Mei, J., Li, Z., Zhang, X., Zhou, L., Gui, J.F. (2017) Distinct and Cooperative Roles of amh and dmrt1 in Self-Renewal and Differentiation of Male Germ Cells in Zebrafish.. Genetics. 207(3):1007-1022

Liu, Y., Lin, Z., Liu, M., Wang, H., Sun, H. (2017) Overexpression of DYRK1A, a Down Syndrome Candidate gene, Impairs Primordial Germ Cells Maintenance and Migration in zebrafish. Scientific Reports. 7:15313

Liu, Y., Xue, W., Zhu, L., Ye, D., Zhu, X., Wang, H., Sun, Y., Deng, F. (2017) Nanog suppresses the expression of vasa by directly regulating nlk1 in the early zebrafish embryo. Biochimie. 142:93-101

Miranda-Rodríguez, J.R., Salas-Vidal, E., Lomelí, H., Zurita, M., Schnabel, D. (2017) RhoA/ROCK pathway activity is essential for the correct localization of the germ plasm mRNAs in zebrafish embryos. Developmental Biology. 421(1):27-42

Mishima, Y., Tomari, Y. (2017) Pervasive yet nonuniform contributions of Dcp2 and Cnot7 to maternal mRNA clearance in zebrafish. Genes to cells : devoted to molecular & cellular mechanisms. 22(7):670-678

Presslauer, C., Tilahun Bizuayehu, T., Kopp, M., Fernandes, J.M., Babiak, I. (2017) Dynamics of miRNA transcriptome during gonadal development of zebrafish. Scientific Reports. 7:43850

Ribas, L., Liew, W.C., Díaz, N., Sreenivasan, R., Orbán, L., Piferrer, F. (2017) Heat-induced masculinization in domesticated zebrafish is family-specific and yields a set of different gonadal transcriptomes. Proceedings of the National Academy of Sciences of the United States of America. 114(6):E941-E950

Ribas, L., Vanezis, K., Imués, M.A., Piferrer, F. (2017) Treatment with a DNA methyltransferase inhibitor feminizes zebrafish and induces long-term expression changes in the gonads. Epigenetics & chromatin. 10:59

Xue, T., Yu, M., Pan, Q., Wang, Y., Fang, J., Li, L., Deng, Y., Chen, K., Wang, Q., Chen, T. (2017) Black carp vasa identifies embryonic and gonadal germ cells. Development genes and evolution. 227(4):231-243

Yan, Y.L., Desvignes, T., BreMiller, R., Wilson, C., Dillon, D., High, S., Draper, B., Buck, C.L., Postlethwait, J. (2017) The gonadal soma controls ovarian follicle proliferation through Gsdf in zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 246(11):925-945

Zhang, J., Liu, W., Jin, Y., Jia, P., Jia, K., Yi, M. (2017) MiR-202-5p is a novel germ plasm-specific microRNA in zebrafish. Scientific Reports. 7:7055

Baker, B.B., Yee, J.S., Meyer, D.N., Yang, D., Baker, T.R. (2016) Histological and Transcriptomic Changes in Male Zebrafish Testes Due to Early Life Exposure to Low Level 2,3,7,8-Tetrachlorodibenzo-p-Dioxin. Zebrafish. 13:413-423

Bouwmeester, M.C., Ruiter, S., Lommelaars, T., Sippel, J., Hodemaekers, H.M., van den Brandhof, E.J., Pennings, J.L., Kamstra, J.H., Jelinek, J., Issa, J.J., Legler, J., van der Ven, L.T. (2016) Zebrafish embryos as a screen for DNA methylation modifications after compound exposure. Toxicology and applied pharmacology. 291:84-96

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Chen, S.X., Bogerd, J., García-López, A., de Jonge, H., de Waal, P.P., Hong, W.S., and Schulz, R.W. (2010) Molecular Cloning and Functional Characterization of a Zebrafish Nuclear Progesterone Receptor. Biology of reproduction. 82(1):171-181

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Leu, D.H., and Draper, B.W. (2010) The ziwi promoter drives germline-specific gene expression in zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 239(10):2714-2721

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Liu, W., and Collodi, P. (2010) Zebrafish dead end possesses ATPase activity that is required for primordial germ cell development. FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 24(8):2641-2650

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Rodriguez-Mari, A., Cañestro, C., Bremiller, R.A., Nguyen-Johnson, A., Asakawa, K., Kawakami, K., and Postlethwait, J.H. (2010) Sex Reversal in Zebrafish fancl Mutants Is Caused by Tp53-Mediated Germ Cell Apoptosis. PLoS Genetics. 6(7):e1001034

Saotome, K., Hayashi, K., Adachi, N., Nakamura, Y., and Nakamura, M. (2010) Isolation and characterization of Vasa in the frog Rana rugosa. Journal of experimental zoology. Part A, Ecological genetics and physiology. 313(7):452-459

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Kosaka, K., Kawakami, K., Sakamoto, H., and Inoue, K. (2007) Spatiotemporal localization of germ plasm RNAs during zebrafish oogenesis. Mechanisms of Development. 124(4):279-289

Nakkrasae, L.I., and Damrongphol, P. (2007) A vasa-like gene in the giant freshwater prawn, Macrobrachium rosenbergii. Molecular reproduction and development. 74(7):835-842

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Wang, X.G., and Orban, L. (2007) Anti-Mullerian hormone and 11 beta-hydroxylase show reciprocal expression to that of aromatase in the transforming gonad of zebrafish males. Developmental Dynamics : an official publication of the American Association of Anatomists. 236(5):1329-1338

Wang, X.G., Bartfai, R., Sleptsova-Freidrich, I., and Orban, L. (2007) The timing and extent of 'juvenile ovary' phase are highly variable during zebrafish testis differentiation. Journal of Fish Biology. 70(sa):33

Miyake, A., Saito, T., Kashiwagi, N., Ando, D., Yamamoto, A., Suzuki, T., Nakatsuji, N., and Nakatsuji, T. (2006) Cloning and pattern of expression of the shiro-uo vasa gene during embryogenesis and its roles in PGC development. The International journal of developmental biology. 50(7):619-625

Ramasamy, S., Wang, H., Quach, H.N., and Sampath, K. (2006) Zebrafish Staufen1 and Staufen2 are required for the survival and migration of primordial germ cells. Developmental Biology. 292(2):393-406

Theusch, E.V., Brown, K.J., and Pelegri, F. (2006) Separate pathways of RNA recruitment lead to the compartmentalization of the zebrafish germ plasm. Developmental Biology. 292(1):129-141

Urven, L.E., Yabe, T., and Pelegri, F. (2006) A role for non-muscle myosin II function in furrow maturation in the early zebrafish embryo. Journal of Cell Science. 119(20):4342-4352

Blaser, H., Eisenbeiss, S., Neumann, M., Reichman-Fried, M., Thisse, B., Thisse, C., and Raz, E. (2005) Transition from non-motile behaviour to directed migration during early PGC development in zebrafish. Journal of Cell Science. 118(17):4027-4038

Mo, S., Song, P., Lv, D., Chen, Y., Zhou, W., Gong, W., and Zhu, Z. (2005) Zebrafish z-otu, a novel Otu and Tudor domain-containing gene, is expressed in early stages of oogenesis and embryogenesis. BBA Gene Structure and Expression. 1732(1-3):1-7

Slanchev, K., Stebler, J., de la Cueva-Mendez, G., and Raz, E. (2005) Development without germ cells: The role of the germ line in zebrafish sex differentiation. Proceedings of the National Academy of Sciences of the United States of America. 102(11):4074-4079

Woods, I.G., Wilson, C., Friedlander, B., Chang, P., Reyes, D.K., Nix, R., Kelly, P.D., Chu, F., Postlethwait, J.H., and Talbot, W.S. (2005) The zebrafish gene map defines ancestral vertebrate chromosomes. Genome research. 15(9):1307-1314

Bakkers, J., Kramer, C., Pothof, J., Quaedvlieg, N.E., Spaink, H.P., and Hammerschmidt, M. (2004) Has2 is required upstream of Rac1 to govern dorsal migration of lateral cells during zebrafish gastrulation. Development (Cambridge, England). 131(3):525-537

Bateman, M.J., Cornell, R., d'Alencon, C., and Sandra, A. (2004) Expression of the zebrafish Staufen gene in the embryo and adult. Gene expression patterns : GEP. 5(2):273-278

Hashimoto, Y., Maegawa, S., Nagai, T., Yamaha, E., Suzuki, H., Yasuda, K., and Inoue, K. (2004) Localized maternal factors are required for zebrafish germ cell formation. Developmental Biology. 268(1):152-161

Kishimoto, Y., Koshida, S., Furutani-Seiki, M., and Kondoh, H. (2004) Zebrafish maternal-effect mutations causing cytokinesis defect without affecting mitosis or equatorial vasa deposition. Mechanisms of Development. 121(1):79-89

Krovel, A.V., and Olsen, L.C. (2004) Sexual dimorphic expression pattern of a splice variant of zebrafish vasa during gonadal development. Developmental Biology. 271(1):190-197

Kurita, K., and Sakai, N. (2004) Functionally distinctive testicular cell lines of zebrafish to support male germ cell development. Molecular reproduction and development. 67(4):430-438

Lunde, K., Belting, H.G., and Driever, W. (2004) Zebrafish pou5f1/pou2, homolog of mammalian Oct4, functions in the endoderm specification cascade. Current biology : CB. 14(1):48-55

Bartfai, R. and Orbán, L. (2003) The vasa locus in zebrafish: multiple RGG boxes from intragenic duplications. DNA and cell biology. 22(1):47-54

Brudler, R., Hitomi, K., Daiyasu, H., Toh, H., Kucho, K., Ishiura, M., Kanehisa, M., Roberts, V.A., Todo, T., Tainer, J.A., and Getzoff, E.D. (2003) Identification of a New Cryptochrome Class: Structure, Function, and Evolution. Molecular Cell. 11(1):59-67

Pelegri, F. (2003) Maternal factors in zebrafish development. Developmental Dynamics : an official publication of the American Association of Anatomists. 228(3):535-554

Doitsidou, M., Reichman-Fried, M., Stebler, J., Köprunner, M., Dörries, J., Meyer, D., Esguerra, C.V., Leung, T., and Raz, E. (2002) Guidance of primordial germ cell migration by the chemokine SDF-1. Cell. 111(5):647-659

Knaut, H., Steinbeisser, H., Schwarz, H., and Nüsslein-Volhard, C. (2002) An evolutionary conserved region in the vasa 3'UTR targets RNA translation to the germ cells in the zebrafish. Current biology : CB. 12(6):454-466

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Krovel, A.V. and Olsen, L.C. (2002) Expression of a vas::EGFP transgene in primordial germ cells of the zebrafish. Mechanisms of Development. 116(1-2):141-150

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Sakai, N. (2002) Transmeiotic differentiation of zebrafish germ cells into functional sperm in culture. Development (Cambridge, England). 129(14):3359-3365

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Tan, C.H., Lee, T.C., Weeraratne, S.D., Korzh, V., Lim, T.M., and Gong, Z. (2002) Ziwi, the zebrafish homologue of the Drosophila piwi: co-localization with vasa at the embryonic genital ridge and gonad-specific expression in the adults. Mechanisms of Development. (Suppl.) 119:S221-S224

Wibrand, K. and Olsen, L. (2002) Linker histone H1M transcripts mark the developing germ line in zebrafish. Mechanisms of Development. 117(1-2):249-252

Wolke, U., Weidinger, G., Köprunner, M., and Raz, E. (2002) Multiple levels of post-transcriptional control lead to germ line specific gene expression in the zebrafish. Current biology : CB. 12(4):289-294

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Additional Citations (18):

ZFIN Staff (2023) Automated Curation of UniProt Database Links. Automated Data Submission.

ZFIN Staff (2020) Addition of links from ZFIN to Expression Atlas. Semi-automated Curation.

ZFIN Staff (2017) Curation of PANTHER Gene IDs. Automated Data Submission.

ZFIN Staff (2017) Curation of Alliance of Genome Resources Database Links. Automated Data Submission.

Busch-Nentwich, E., Kettleborough, R., Dooley, C. M., Scahill, C., Sealy, I., White, R., Herd, C., Mehroke, S., Wali, N., Carruthers, S., Hall, A., Collins, J., Gibbons, R., Pusztai, Z., Clark, R., and Stemple, D.L. (2013) Sanger Institute Zebrafish Mutation Project mutant data submission. ZFIN Direct Data Submission.

ZFIN Staff (2013) Semi-automated association of ENSDARG identifiers with ZFIN genes for the ZMP project. Semi-automated Curation.

Gaudet, P., Livstone, M., Thomas, P., The Reference Genome Project (2010) Annotation inferences using phylogenetic trees. Automated Data Submission.

ZFIN Staff (2007) Microarray Expression to Gene Association in ZFIN. Semi-automated Curation.

Ensembl curators, GOA curators (2006) Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara. Manually curated data.

ZFIN Staff (2006) Curation of Ensembl Database Links. Automated Data Submission.

ZFIN Staff (2004) ZGC Data Curation and Association in ZFIN by ZFIN Staff. Semi-automated Curation.

ZFIN Staff (2003) Curation of VEGA Database Links. Automated Data Submission.

ZFIN Staff (2003) Computational Sequence to Gene Association in ZFIN. Semi-automated Curation.

ZFIN Staff (2003) Gene Ontology Annotation Through Association of Enzyme Commission numbers with GO Terms. Automated Data Submission.

ZFIN Staff (2002) Gene Ontology Annotation Through Association of UniProt Keywords with GO Terms. Automated Data Submission.

ZFIN Staff (2002) Curation of NCBI Gene Data Via Shared RNA Sequence IDs. Automated Data Submission.

ZFIN Staff (2002) Scientific Curation. Manually curated data.

ZFIN Staff (2002) Gene Ontology Annotation Through Association of InterPro Records with GO Terms. Automated Data Submission.