Banerjee, B., Koner, D., Karasik, D., Saha, N. (2020) Genome-wide identification of novel long non-coding RNAs and their possible roles in hypoxic zebrafish brain. Genomics. 113(1 Pt 1):29-43

Carrington, B., Varshney, G.K., Burgess, S.M., Sood, R. (2015) CRISPR-STAT: an easy and reliable PCR-based method to evaluate target-specific sgRNA activity. Nucleic acids research. 43(22):e157

Del Bene, F., Ettwiller, L., Skowronska-Krawczyk, D., Baier, H., Matter, J.M., Birney, E., Wittbrodt, J. (2007) In vivo validation of a computationally predicted conserved Ath5 target gene set. PLoS Genetics. 3:1661-71

Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549

Hua, J.Y., Smear, M.C., Baier, H., and Smith, S.J. (2005) Regulation of axon growth in vivo by activity-based competition. Nature. 434(7036):1022-1026

Kozak, E.L., Palit, S., Miranda-Rodríguez, J.R., Janjic, A., Böttcher, A., Lickert, H., Enard, W., Theis, F.J., López-Schier, H. (2020) Epithelial Planar Bipolarity Emerges from Notch-Mediated Asymmetric Inhibition of Emx2. Current biology : CB. 30(6):1142-1151.e6

Martik, M.L., Gandhi, S., Uy, B.R., Gillis, J.A., Green, S.A., Simoes-Costa, M., Bronner, M.E. (2019) Evolution of the new head by gradual acquisition of neural crest regulatory circuits. Nature. 574(7780):675-678

Mowbray, C., Hammerschmidt, M., and Whitfield, T.T. (2001) Expression of BMP signalling pathway members in the developing zebrafish inner ear and lateral line. Mechanisms of Development. 108(1-2):179-184

Pujol-Martí, J., Faucherre, A., Aziz-Bose, R., Asgharsharghi, A., Colombelli, J., Trapani, J.G., López-Schier, H. (2014) Converging Axons Collectively Initiate and Maintain Synaptic Selectivity in a Constantly Remodeling Sensory Organ. Current biology : CB. 24(24):2968-74

Scott, E.K., Mason, L., Arrenberg, A.B., Ziv, L., Gosse, N.J., Xiao, T., Chi, N.C., Asakawa, K., Kawakami, K., and Baier, H. (2007) Targeting neural circuitry in zebrafish using GAL4 enhancer trapping. Nature Methods. 4(4):323-326

Stawicki, T.M., Owens, K.N., Linbo, T., Reinhart, K.E., Rubel, E.W., Raible, D.W. (2014) The zebrafish merovingian mutant reveals a role for pH regulation in hair cell toxicity and function. Disease models & mechanisms. 7:847-856

Varshney, G.K., Pei, W., LaFave, M.C., Idol, J., Xu, L., Gallardo, V., Carrington, B., Bishop, K., Jones, M., Li, M., Harper, U., Huang, S.C., Prakash, A., Chen, W., Sood, R., Ledin, J., Burgess, S.M. (2015) High-throughput gene targeting and phenotyping in zebrafish using CRISPR/Cas9. Genome research. 25(7):1030-42

Xiao, T., and Baier, H. (2007) Lamina-specific axonal projections in the zebrafish tectum require the type IV collagen Dragnet. Nature Neuroscience. 10(12):1529-1537

Yu, R., Wang, P., Chen, X.W. (2020) The role of gfi1.2 in the development of zebrafish inner ear. Hearing Research. 396:108055

Banerjee, B., Koner, D., Karasik, D., Saha, N. (2020) Genome-wide identification of novel long non-coding RNAs and their possible roles in hypoxic zebrafish brain. Genomics. 113(1 Pt 1):29-43

Kozak, E.L., Palit, S., Miranda-Rodríguez, J.R., Janjic, A., Böttcher, A., Lickert, H., Enard, W., Theis, F.J., López-Schier, H. (2020) Epithelial Planar Bipolarity Emerges from Notch-Mediated Asymmetric Inhibition of Emx2. Current biology : CB. 30(6):1142-1151.e6

Lush, M.E., Diaz, D.C., Koenecke, N., Baek, S., Boldt, H., St Peter, M.K., Gaitan-Escudero, T., Romero-Carvajal, A., Busch-Nentwich, E.M., Perera, A.G., Hall, K.E., Peak, A., Haug, J.S., Piotrowski, T. (2019) scRNA-Seq reveals distinct stem cell populations that drive hair cell regeneration after loss of Fgf and Notch signaling. eLIFE. 8:

Du, X.F., Xu, B., Zhang, Y., Chen, M.J., Du, J.L. (2018) A transgenic zebrafish model for in vivo long-term imaging of retinotectal synaptogenesis. Scientific Reports. 8:14077

Carrington, B., Varshney, G.K., Burgess, S.M., Sood, R. (2015) CRISPR-STAT: an easy and reliable PCR-based method to evaluate target-specific sgRNA activity. Nucleic acids research. 43(22):e157

Varshney, G.K., Pei, W., LaFave, M.C., Idol, J., Xu, L., Gallardo, V., Carrington, B., Bishop, K., Jones, M., Li, M., Harper, U., Huang, S.C., Prakash, A., Chen, W., Sood, R., Ledin, J., Burgess, S.M. (2015) High-throughput gene targeting and phenotyping in zebrafish using CRISPR/Cas9. Genome research. 25(7):1030-42

Stawicki, T.M., Owens, K.N., Linbo, T., Reinhart, K.E., Rubel, E.W., Raible, D.W. (2014) The zebrafish merovingian mutant reveals a role for pH regulation in hair cell toxicity and function. Disease models & mechanisms. 7:847-856

Yu, X., Lau, D., Ng, C.P., and Roy, S. (2011) Cilia-driven fluid flow as an epigenetic cue for otolith biomineralization on sensory hair cells of the inner ear. Development (Cambridge, England). 138(3):487-494

Woo, S., Rowan, D.J., and Gomez, T.M. (2009) Retinotopic mapping requires focal adhesion kinase-mediated regulation of growth cone adhesion. The Journal of neuroscience : the official journal of the Society for Neuroscience. 29(44):13981-13991

Del Bene, F., Ettwiller, L., Skowronska-Krawczyk, D., Baier, H., Matter, J.M., Birney, E., Wittbrodt, J. (2007) In vivo validation of a computationally predicted conserved Ath5 target gene set. PLoS Genetics. 3:1661-71

Xiao, T., and Baier, H. (2007) Lamina-specific axonal projections in the zebrafish tectum require the type IV collagen Dragnet. Nature Neuroscience. 10(12):1529-1537

Kay, J.N., Link, B.A., and Baier, H. (2005) Staggered cell-intrinsic timing of ath5 expression underlies the wave of ganglion cell neurogenesis in the zebrafish retina. Development (Cambridge, England). 132(11):2573-2585

DeCarvalho, A.C., Cappendijk, S.L., and Fadool, J.M. (2004) Developmental expression of the POU domain transcription factor Brn-3b (Pou4f2) in the lateral line and visual system of zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 229(4):869-876

Sampath, K. and Stuart, G.W. (1996) Developmental expression of class III and IV POU domain genes in the zebrafish. Biochemical and Biophysical Research Communications. 219:565-571