|
|
de Vito, G., Turrini, L., Müllenbroich, C., Ricci, P., Sancataldo, G., Mazzamuto, G., Tiso, N., Sacconi, L., Fanelli, D., Silvestri, L., Vanzi, F., Pavone, F.S. (2022) Fast whole-brain imaging of seizures in zebrafish larvae by two-photon light-sheet microscopy. Biomedical Optics Express. 13:1516-1536
|
Diez, M., Medina-Muñoz, S.G., Castellano, L.A., da Silva Pescador, G., Wu, Q., Bazzini, A.A. (2022) iCodon customizes gene expression based on the codon composition. Scientific Reports. 12:12126
|
Han, B., Zhang, Y., Zhou, Y., Zhang, B., Krueger, C.J., Bi, X., Zhu, Z., Tong, X., Zhang, B. (2022) ErCas12a and T5exo-ErCas12a Mediate Simple and Efficient Genome Editing in Zebrafish. Biology. 11(3):
|
Martins, R.R., Zamzam, M., Tracey-White, D., Moosajee, M., Thummel, R., Henriques, C.M., MacDonald, R.B. (2022) Müller Glia maintain their regenerative potential despite degeneration in the aged zebrafish retina. Aging Cell. 21(4):e13597
|
Ricci, P., Marchetti, M., Sorelli, M., Turrini, L., Resta, F., Gavryusev, V., de Vito, G., Sancataldo, G., Vanzi, F., Silvestri, L., Pavone, F.S. (2022) Power-effective scanning with AODs for 3D optogenic applications. Journal of biophotonics. 15(4):e202100256
|
Suresh, S., Rabbie, R., Garg, M., Lumaquin, D., Huang, T.H., Montal, E., Ma, Y., Cruz, N.M., Tang, X., Nsengimana, J., Newton-Bishop, J., Hunter, M.V., Zhu, Y., Chen, K., de Stanchina, E., Adams, D.J., White, R.M. (2022) Identifying the transcriptional drivers of metastasis embedded within localized melanoma. Cancer discovery. 13(1):194-215
|
Turrini, L., Sorelli, M., de Vito, G., Credi, C., Tiso, N., Vanzi, F., Pavone, F.S. (2022) Multimodal Characterization of Seizures in Zebrafish Larvae. Biomedicines. 10(5)
|
Vicencio, J., Sánchez-Bolaños, C., Moreno-Sánchez, I., Brena, D., Vejnar, C.E., Kukhtar, D., Ruiz-López, M., Cots-Ponjoan, M., Rubio, A., Melero, N.R., Crespo-Cuadrado, J., Carolis, C., Pérez-Pulido, A.J., Giráldez, A.J., Kleinstiver, B.P., Cerón, J., Moreno-Mateos, M.A. (2022) Genome editing in animals with minimal PAM CRISPR-Cas9 enzymes. Nature communications. 13:2601
|
Zhang, Y., Peng, S., Lin, S., Ji, M., Du, T., Chen, X., Xu, H. (2022) Discovery of a novel photoswitchable PI3K inhibitor toward optically-controlled anticancer activity. Bioorganic & Medicinal Chemistry. 72:116975
|
Adachi, Y., Higuchi, A., Wakai, E., Shiromizu, T., Koiwa, J., Nishimura, Y. (2021) Involvement of homeobox transcription factor Mohawk in palatogenesis. Congenital anomalies. 62(1):27-37
|
|
|
Avagyan, S., Henninger, J.E., Mannherz, W.P., Mistry, M., Yoon, J., Yang, S., Weber, M.C., Moore, J.L., Zon, L.I. (2021) Resistance to inflammation underlies enhanced fitness in clonal hematopoiesis. Science (New York, N.Y.). 374:768-772
|
|
|
Hentig, J., Campbell, L.J., Cloghessy, K., Lee, M., Boggess, W., Hyde, D.R. (2021) Prophylactic Activation of Shh Signaling Attenuates TBI-Induced Seizures in Zebrafish by Modulating Glutamate Excitotoxicity through Eaat2a. Biomedicines. 10(1):
|
|
|
Hentig, J., Cloghessy, K., Lahne, M., Jung, Y.J., Petersen, R.A., Morris, A.C., Hyde, D.R. (2021) Zebrafish Blunt-Force TBI Induces Heterogenous Injury Pathologies That Mimic Human TBI and Responds with Sonic Hedgehog-Dependent Cell Proliferation across the Neuroaxis. Biomedicines. 9(8):
|
Higuchi, A., Wakai, E., Tada, T., Koiwa, J., Adachi, Y., Shiromizu, T., Goto, H., Tanaka, T., Nishimura, Y. (2021) Generation of a Transgenic Zebrafish Line for In Vivo Assessment of Hepatic Apoptosis. Pharmaceuticals (Basel, Switzerland). 14(11):
|
Katz, S.R., Yakovlev, M.A., Vanselow, D.J., Ding, Y., Lin, A.Y., Parkinson, D.Y., Wang, Y., Canfield, V.A., Ang, K.C., Cheng, K.C. (2021) Whole-organism 3D quantitative characterization of zebrafish melanin by silver deposition micro-CT. eLIFE. 10:
|
|
|
Kroll, F., Powell, G.T., Ghosh, M., Gestri, G., Antinucci, P., Hearn, T.J., Tunbak, H., Lim, S., Dennis, H.W., Fernandez, J.M., Whitmore, D., Dreosti, E., Wilson, S.W., Hoffman, E.J., Rihel, J. (2021) A simple and effective F0 knockout method for rapid screening of behaviour and other complex phenotypes. eLIFE. 10:
|
|
|
Magnani, E., Macchi, F., Madakashira, B.P., Zhang, C., Alaydaroos, F., Sadler, K.C. (2021) uhrf1 and dnmt1 Loss Induces an Immune Response in Zebrafish Livers Due to Viral Mimicry by Transposable Elements. Frontiers in immunology. 12:627926
|
Pohl, J., Golovko, O., Carlsson, G., Örn, S., Schmitz, M., Ahi, E.P. (2021) Gene co-expression network analysis reveals mechanisms underlying ozone-induced carbamazepine toxicity in zebrafish (Danio rerio) embryos. Chemosphere. 276:130282
|
|
|
Saltari, A., Dzung, A., Quadri, M., Tiso, N., Facchinello, N., Hernandez-Barranco, A., Garcia-Silva, S., Nogués, L., Stoffel, C.I., Cheng, P.F., Turko, P., Eichhoff, O.M., Truzzi, F., Marconi, A., Pincelli, C., Peinado, H., Dummer, R., Levesque, M.P. (2021) Specific activation of the CD271 intracellular domain in combination with chemotherapy or targeted therapy inhibits melanoma progression. Cancer research. 81(23):6044-6057
|
Szmeja, S., Gubica, T., Ostrowski, A., Zalewska, A., Szeleszczuk, Ł., Zawada, K., Zielińska-Pisklak, M., Skowronek, K., Wiweger, M. (2021) Caffeine-Cyclodextrin Complexes as Solids: Synthesis, Biological and Physicochemical Characterization. International Journal of Molecular Sciences. 22(8):
|
Turkalj, B., Quallich, D., Bessert, D.A., Kramer, A.C., Cook, T.A., Thummel, R. (2021) Development and characterization of a chronic photoreceptor degeneration model in adult zebrafish that does not trigger a regenerative response. Experimental Eye Research. 209:108630
|
Yu, D., Zhang, P., Li, J., Liu, T., Zhang, Y., Wang, Q., Zhang, J., Lu, X., Fan, X. (2021) Neuroprotective effects of Ginkgo biloba dropping pills in Parkinson's disease. Journal of pharmaceutical analysis. 11:220-231
|
Zhang, K., Ji, M., Lin, S., Peng, S., Zhang, Z., Zhang, M., Zhang, J., Zhang, Y., Wu, D., Tian, H., Chen, X., Xu, H. (2021) Design, Synthesis, and Biological Evaluation of a Novel Photocaged PI3K Inhibitor toward Precise Cancer Treatment. Journal of medicinal chemistry. 64(11):7331-7340
|
Campbell, L.J., Hobgood, J.S., Jia, M., Boyd, P., Hipp, R.I., Hyde, D.R. (2020) Notch3 and DeltaB maintain Müller glia quiescence and act as negative regulators of regeneration in the light-damaged zebrafish retina. Glia. 69(3):546-566
|
de Vito, G., Ricci, P., Turrini, L., Gavryusev, V., Müllenbroich, C., Tiso, N., Vanzi, F., Silvestri, L., Pavone, F.S. (2020) Effects of excitation light polarization on fluorescence emission in two-photon light-sheet microscopy. Biomedical Optics Express. 11:4651-4665
|
Espino-Saldaña, A.E., Durán-Ríos, K., Olivares-Hernandez, E., Rodríguez-Ortiz, R., Arellano-Carbajal, F., Martínez-Torres, A. (2020) Temporal and spatial expression of zebrafish mctp genes and evaluation of frameshift alleles of mctp2b. Gene. 738:144371
|
|
|
Giarmarco, M.M., Brock, D.C., Robbings, B.M., Cleghorn, W.M., Tsantilas, K.A., Kuch, K.C., Ge, W., Rutter, K.M., Parker, E.D., Hurley, J.B., Brockerhoff, S.E. (2020) Daily mitochondrial dynamics in cone photoreceptors. Proceedings of the National Academy of Sciences of the United States of America. 117:28816-28827
|
Gur, D., Bain, E.J., Johnson, K.R., Aman, A.J., Pasoili, H.A., Flynn, J.D., Allen, M.C., Deheyn, D.D., Lee, J.C., Lippincott-Schwartz, J., Parichy, D.M. (2020) In situ differentiation of iridophore crystallotypes underlies zebrafish stripe patterning. Nature communications. 11:6391
|
Hoang, T., Wang, J., Boyd, P., Wang, F., Santiago, C., Jiang, L., Yoo, S., Lahne, M., Todd, L.J., Jia, M., Saez, C., Keuthan, C., Palazzo, I., Squires, N., Campbell, W.A., Rajaii, F., Parayil, T., Trinh, V., Kim, D.W., Wang, G., Campbell, L.J., Ash, J., Fischer, A.J., Hyde, D.R., Qian, J., Blackshaw, S. (2020) Gene regulatory networks controlling vertebrate retinal regeneration. Science (New York, N.Y.). 370(6519):
|
Li, Z., Shi, Y., Zhang, X., Xu, J., Wang, H., Zhao, L., Wang, Y. (2020) Screening Immunoactive Compounds of Ganoderma lucidum Spores by Mass Spectrometry Molecular Networking Combined With in vivo Zebrafish Assays. Frontiers in pharmacology. 11:287
|
Liu, T., Guo, Y., Zhao, J., He, S., Bai, Y., Wang, N., Lin, Y., Liu, Q., Xu, X. (2020) Systems Pharmacology and Verification of ShenFuHuang Formula in Zebrafish Model Reveal Multi-Scale Treatment Strategy for Septic Syndrome in COVID-19. Frontiers in pharmacology. 11:584057
|
|
|
|
|
Moroz-Omori, E.V., Satyapertiwi, D., Ramel, M.C., Høgset, H., Sunyovszki, I.K., Liu, Z., Wojciechowski, J.P., Zhang, Y., Grigsby, C.L., Brito, L., Bugeon, L., Dallman, M.J., Stevens, M.M. (2020) Photoswitchable gRNAs for Spatiotemporally Controlled CRISPR-Cas-Based Genomic Regulation. ACS central science. 6:695-703
|
Nunley, H., Nagashima, M., Martin, K., Lorenzo Gonzalez, A., Suzuki, S.C., Norton, D.A., Wong, R.O.L., Raymond, P.A., Lubensky, D.K. (2020) Defect patterns on the curved surface of fish retinae suggest a mechanism of cone mosaic formation. PLoS Computational Biology. 16:e1008437
|
Volkov, L.I., Kim-Han, J.S., Saunders, L.M., Poria, D., Hughes, A.E.O., Kefalov, V.J., Parichy, D.M., Corbo, J.C. (2020) Thyroid hormone receptors mediate two distinct mechanisms of long-wavelength vision. Proceedings of the National Academy of Sciences of the United States of America. 117(26):15262-15269
|
Wakai, E., Suzumura, Y., Ikemura, K., Mizuno, T., Watanabe, M., Takeuchi, K., Nishimura, Y. (2020) An Integrated In Silico and In Vivo Approach to Identify Protective Effects of Palonosetron in Cisplatin-Induced Nephrotoxicity. Pharmaceuticals (Basel, Switzerland). 13(12):
|
|
|
|
|
Zhang, Z., Bai, L., Cong, L., Yu, P., Zhang, T., Shi, W., Li, F., Du, J., Wang, K. (2020) Imaging volumetric dynamics at high speed in mouse and zebrafish brain with confocal light field microscopy. Nature Biotechnology. 39(1):74-83
|
Zhang, Z., Wen, K., Zhang, C., Laroche, F., Wang, Z., Zhou, Q., Liu, Z., Abrahams, J.P., Zhou, X. (2020) Extracellular Nanovesicle Enhanced Gene Transfection Using Polyethyleneimine in HEK293T Cells and Zebrafish Embryos. Frontiers in bioengineering and biotechnology. 8:448
|
Zhu, X.Y., Xia, B., Ye, T., Dai, M.Z., Yang, H., Li, C.Q., Li, P. (2020) Ponatinib-induced ischemic stroke in larval zebrafish for drug screening. European Journal of Pharmacology. 889:173292
|
Cordero-Maldonado, M.L., Perathoner, S., van der Kolk, K.J., Boland, R., Heins-Marroquin, U., Spaink, H.P., Meijer, A.H., Crawford, A.D., de Sonneville, J. (2019) Deep learning image recognition enables efficient genome editing in zebrafish by automated injections. PLoS One. 14:e0202377
|
Dooley, C.M., Wali, N., Sealy, I.M., White, R.J., Stemple, D.L., Collins, J.E., Busch-Nentwich, E.M. (2019) The gene regulatory basis of genetic compensation during neural crest induction. PLoS Genetics. 15:e1008213
|
Feng, J., Zhang, C., Lischinsky, J.E., Jing, M., Zhou, J., Wang, H., Zhang, Y., Dong, A., Wu, Z., Wu, H., Chen, W., Zhang, P., Zou, J., Hires, S.A., Zhu, J.J., Cui, G., Lin, D., Du, J., Li, Y. (2019) A Genetically Encoded Fluorescent Sensor for Rapid and Specific In Vivo Detection of Norepinephrine. Neuron. 102(4):745-761.e8
|
Gavryusev, V., Sancataldo, G., Ricci, P., Montalbano, A., Fornetto, C., Turrini, L., Laurino, A., Pesce, L., de Vito, G., Tiso, N., Vanzi, F., Silvestri, L., Pavone, F.S. (2019) Dual-beam confocal light-sheet microscopy via flexible acousto-optic deflector. Journal of Biomedical Optics. 24:1-6
|
Heliste, J., Chheda, H., Paatero, I., Salminen, T.A., Akimov, Y., Paavola, J., Elenius, K., Aittokallio, T. (2019) Genetic and functional implications of an exonic TRIM55 variant in heart failure. Journal of Molecular and Cellular Cardiology. 138:222-233
|
Hoshijima, K., Jurynec, M.J., Klatt Shaw, D., Jacobi, A.M., Behlke, M.A., Grunwald, D.J. (2019) Highly Efficient CRISPR-Cas9-Based Methods for Generating Deletion Mutations and F0 Embryos that Lack Gene Function in Zebrafish. Developmental Cell. 51(5):645-657.e4
|
Koiwa, J., Shiromizu, T., Adachi, Y., Ikejiri, M., Nakatani, K., Tanaka, T., Nishimura, Y. (2019) Generation of a Triple-Transgenic Zebrafish Line for Assessment of Developmental Neurotoxicity during Neuronal Differentiation. Pharmaceuticals (Basel, Switzerland). 12(4):
|
|
|
Lewis, V.M., Saunders, L.M., Larson, T.A., Bain, E.J., Sturiale, S.L., Gur, D., Chowdhury, S., Flynn, J.D., Allen, M.C., Deheyn, D.D., Lee, J.C., Simon, J.A., Lippincott-Schwartz, J., Raible, D.W., Parichy, D.M. (2019) Fate plasticity and reprogramming in genetically distinct populations of Danio leucophores. Proceedings of the National Academy of Sciences of the United States of America. 116(24):11806-11811
|
Liu, P., Luk, K., Shin, M., Idrizi, F., Kwok, S., Roscoe, B., Mintzer, E., Suresh, S., Morrison, K., Frazão, J.B., Bolukbasi, M.F., Ponnienselvan, K., Luban, J., Zhu, L.J., Lawson, N.D., Wolfe, S.A. (2019) Enhanced Cas12a editing in mammalian cells and zebrafish. Nucleic acids research. 47(8):4169-4180
|
Morishima, T., Krahl, A.C., Nasri, M., Xu, Y., Aghaallaei, N., Findik, B., Klimiankou, M., Ritter, M., Hartmann, M.D., Gloeckner, C.J., Stefańczyk, S., Lindner, C., Oswald, B., Bernhard, R., Hähnel, K., Hermanutz-Klein, U., Ebinger, M., Handgretinger, R., Casadei, N., Welte, K., Andre, M., Müller, P., Bajoghli, B., Skokowa, J. (2019) LMO2 activation by deacetylation is indispensable for hematopoiesis and T-ALL leukemogenesis. Blood. 134(14):1159-1175
|
Saito, E., Isogai, S., Deguchi, T., Ishida, K., Nozaki, T., Ishiyama, E., Wayama, M., Shimoda, H. (2019) Intraperitoneal dye injection method for visualizing the functioning lymphatic vascular system in zebrafish and medaka. Developmental Dynamics : an official publication of the American Association of Anatomists. 249(5):679-692
|
Sancataldo, G., Gavryusev, V., de Vito, G., Turrini, L., Locatelli, M., Fornetto, C., Tiso, N., Vanzi, F., Silvestri, L., Pavone, F.S. (2019) Flexible Multi-Beam Light-Sheet Fluorescence Microscope for Live Imaging Without Striping Artifacts. Frontiers in Neuroanatomy. 13:7
|
Wang, D., Xu, S., Pant, P., Redington, E., Soltanian-Zadeh, S., Farsiu, S., Gong, Y. (2019) Hybrid light-sheet and light-field microscope for high resolution and large volume neuroimaging. Biomedical Optics Express. 10:6595-6610
|
|
|
Wu, Y.G., Wang, K.W., Zhao, Z.R., Zhang, P., Liu, H., Zhou, G.J., Cheng, Y., Wu, W.J., Cai, Y.H., Wu, B.L., Chen, F.Y. (2019) A novel polysaccharide from Dendrobium devonianum serves as a TLR4 agonist for activating macrophages. International journal of biological macromolecules. 133:564-574
|
|
|
|
|
Daane, J.M., Lanni, J., Rothenberg, I., Seebohm, G., Higdon, C.W., Johnson, S.L., Harris, M.P. (2018) Bioelectric-calcineurin signaling module regulates allometric growth and size of the zebrafish fin. Scientific Reports. 8:10391
|
Fadeev, A., Mendoza-Garcia, P., Irion, U., Guan, J., Pfeifer, K., Wiessner, S., Serluca, F., Singh, A.P., Nüsslein-Volhard, C., Palmer, R.H. (2018) ALKALs are in vivo ligands for ALK family receptor tyrosine kinases in the neural crest and derived cells. Proceedings of the National Academy of Sciences of the United States of America. 115(4):E630-E638
|
Jain, R.A., Wolman, M.A., Marsden, K.C., Nelson, J.C., Shoenhard, H., Echeverry, F.A., Szi, C., Bell, H., Skinner, J., Cobbs, E.N., Sawada, K., Zamora, A.D., Pereda, A.E., Granato, M. (2018) A Forward Genetic Screen in Zebrafish Identifies the G-Protein-Coupled Receptor CaSR as a Modulator of Sensorimotor Decision Making. Current biology : CB. 28(9):1357-1369.e5
|
Kasahara, K., Aoki, H., Kiyono, T., Wang, S., Kagiwada, H., Yuge, M., Tanaka, T., Nishimura, Y., Mizoguchi, A., Goshima, N., Inagaki, M. (2018) EGF receptor kinase suppresses ciliogenesis through activation of USP8 deubiquitinase. Nature communications. 9:758
|
Kirla, K.T., Groh, K.J., Poetzsch, M., Banote, R.K., Stadnicka-Michalak, J., Eggen, R.I.L., Schirmer, K., Kraemer, T. (2018) Importance of Toxicokinetics to Assess the Utility of Zebrafish Larvae as Model for Psychoactive Drug Screening Using Meta-Chlorophenylpiperazine (mCPP) as Example. Frontiers in pharmacology. 9:414
|
|
|
Li, J., Li, S., Guo, J., Li, Q., Long, J., Ma, C., Ding, Y., Yan, C., Li, L., Wu, Z., Zhu, H., Li, K.K., Wen, L., Zhang, Q., Xue, Q., Zhao, C., Liu, N., Ivanov, I., Luo, M., Xi, R., Long, H., Wang, P.G., Chen, Y. (2018) Natural Product Micheliolide (MCL) Irreversibly Activates Pyruvate Kinase M2 and Suppresses Leukemia. Journal of medicinal chemistry. 61(9):4155-4164
|
|
|
|
|
Shen, T., Li, S., Cai, L.D., Liu, J.L., Wang, C.Y., Gan, W.J., Li, X.M., Wang, J.R., Sun, L.N., Deng, M., Liu, Y.H., Li, J.M. (2018) Erbin exerts a protective effect against inflammatory bowel disease by suppressing autophagic cell death. Oncotarget. 9:12035-12049
|
|
|
Sun, F., Zeng, J., Jing, M., Zhou, J., Feng, J., Owen, S.F., Luo, Y., Li, F., Wang, H., Yamaguchi, T., Yong, Z., Gao, Y., Peng, W., Wang, L., Zhang, S., Du, J., Lin, D., Xu, M., Kreitzer, A.C., Cui, G., Li, Y. (2018) A Genetically Encoded Fluorescent Sensor Enables Rapid and Specific Detection of Dopamine in Flies, Fish, and Mice. Cell. 174:481-496.e19
|
Ashikawa, Y., Nishimura, Y., Okabe, S., Sato, Y., Yuge, M., Tada, T., Miyao, H., Murakami, S., Kawaguchi, K., Sasagawa, S., Shimada, Y., Tanaka, T. (2017) Potential protective function of the sterol regulatory element binding factor 1-fatty acid desaturase 1/2 axis in early-stage age-related macular degeneration. Heliyon. 3:e00266
|
|
|
|
|
Chen, W., Lau, S.W., Fan, Y., Wu, R.S.S., Ge, W. (2017) Juvenile exposure to bisphenol A promotes ovarian differentiation but suppresses its growth - Potential involvement of pituitary follicle-stimulating hormone. Aquatic toxicology (Amsterdam, Netherlands). 193:111-121
|
|
|
Duan, J., Hu, H., Zhang, Y., Feng, L., Shi, Y., Miller, M.R., Sun, Z. (2017) Multi-organ toxicity induced by fine particulate matter PM2.5 in zebrafish (Danio rerio) model.. Chemosphere. 180:24-32
|
Gorsuch, R.A., Lahne, M., Yarka, C.E., Petravick, M.E., Li, J., Hyde, D.R. (2017) Sox2 regulates Müller glia reprogramming and proliferation in the regenerating zebrafish retina via Lin28 and Ascl1a. Experimental Eye Research. 161:174-192
|
Hashiura, T., Kimura, E., Fujisawa, S., Oikawa, S., Nonaka, S., Kurosaka, D., Hitomi, J. (2017) Live imaging of primary ocular vasculature formation in zebrafish. PLoS One. 12:e0176456
|
Hu, H., Shi, Y., Zhang, Y., Wu, J., Asweto, C.O., Feng, L., Yang, X., Duan, J., Sun, Z. (2017) Comprehensive gene and microRNA expression profiling on cardiovascular system in zebrafish co-exposured of SiNPs and MeHg. The Science of the total environment. 607-608:795-805
|
Hu, H., Zhang, Y., Shi, Y., Feng, L., Duan, J., Sun, Z. (2017) Microarray-based bioinformatics analysis of the combined effects of SiNPs and PbAc on cardiovascular system in zebrafish. Chemosphere. 184:1298-1309
|
Moreno-Mateos, M.A., Fernandez, J.P., Rouet, R., Vejnar, C.E., Lane, M.A., Mis, E., Khokha, M.K., Doudna, J.A., Giraldez, A.J. (2017) CRISPR-Cpf1 mediates efficient homology-directed repair and temperature-controlled genome editing. Nature communications. 8:2024
|
|
|
Seberg, H.E., Van Otterloo, E., Loftus, S.K., Liu, H., Bonde, G., Sompallae, R., Gildea, D.E., Santana, J.F., Manak, J.R., Pavan, W.J., Williams, T., Cornell, R.A. (2017) TFAP2 paralogs regulate melanocyte differentiation in parallel with MITF. PLoS Genetics. 13:e1006636
|
|
|
Venkatesan, A.M., Vyas, R., Gramann, A.K., Dresser, K., Gujja, S., Bhatnagar, S., Chhangawala, S., Gomes, C.B.F., Xi, H.S., Lian, C.G., Houvras, Y., Edwards, Y.J.K., Deng, A., Green, M., Ceol, C.J. (2017) Ligand-activated BMP signaling inhibits cell differentiation and death to promote melanoma. The Journal of Clinical Investigation. 128(1):294-308
|
|
|
Akhter, A., Kumagai, R.I., Roy, S.R., Ii, S., Tokumoto, M., Hossain, B., Wang, J., Klangnurak, W., Miyazaki, T., Tokumoto, T. (2016) Generation of Transparent Zebrafish with Fluorescent Ovaries: A Living Visible Model for Reproductive Biology. Zebrafish. 13(3):155-60
|
|
|
|
|
Ashikawa, Y., Nishimura, Y., Okabe, S., Sasagawa, S., Murakami, S., Yuge, M., Kawaguchi, K., Kawase, R., Tanaka, T. (2016) Activation of Sterol Regulatory Element Binding Factors by Fenofibrate and Gemfibrozil Stimulates Myelination in Zebrafish. Frontiers in pharmacology. 7:206
|
|
|
Duan, J., Yu, Y., Li, Y., Li, Y., Liu, H., Jing, L., Yang, M., Wang, J., Li, C., Sun, Z. (2016) Low-dose exposure of silica nanoparticles induces cardiac dysfunction via neutrophil-mediated inflammation and cardiac contraction in zebrafish embryos. Nanotoxicology. 10(5):575-85
|
|
|
Eshwar, A.K., Tall, B.D., Gangiredla, J., Gopinath, G.R., Patel, I.R., Neuhauss, S.C., Stephan, R., Lehner, A. (2016) Linking Genomo- and Pathotype: Exploiting the Zebrafish Embryo Model to Investigate the Divergent Virulence Potential among Cronobacter spp. PLoS One. 11(6):e0158428
|
|
|
Fehr, A.G., Ruetten, M., Seth-Smith, H.M., Nufer, L., Voegtlin, A., Lehner, A., Greub, G., Crosier, P.S., Neuhauss, S.C., Vaughan, L. (2016) A Zebrafish Model for Chlamydia Infection with the Obligate Intracellular Pathogen Waddlia chondrophila.. Frontiers in microbiology. 7:1829
|
Kawase, R., Nishimura, Y., Ashikawa, Y., Sasagawa, S., Murakami, S., Yuge, M., Okabe, S., Kawaguchi, K., Yamamoto, H., Moriyuki, K., Yamane, S., Tsuruma, K., Shimazawa, M., Hara, H., Tanaka, T. (2016) EP300 Protects from Light-Induced Retinopathy in Zebrafish. Frontiers in pharmacology. 7:126
|
Konantz, M., Alghisi, E., Müller, J.S., Lenard, A., Esain, V., Carroll, K.J., Kanz, L., North, T.E., Lengerke, C. (2016) Evi1 regulates Notch activation to induce zebrafish hematopoietic stem cell emergence. The EMBO journal. 35(21):2315-2331
|
Lee, S.G., Huang, M., Obholzer, N.D., Sun, S., Li, W., Petrillo, M., Dai, P., Zhou, Y., Cotanche, D.A., Megason, S.G., Li, H., Chen, Z.Y. (2016) Myc and Fgf Are Required for Zebrafish Neuromast Hair Cell Regeneration. PLoS One. 11:e0157768
|
Paksa, A., Bandemer, J., Hoeckendorf, B., Razin, N., Tarbashevich, K., Minina, S., Meyen, D., Biundo, A., Leidel, S.A., Peyrieras, N., Gov, N.S., Keller, P.J., Raz, E. (2016) Repulsive cues combined with physical barriers and cell-cell adhesion determine progenitor cell positioning during organogenesis. Nature communications. 7:11288
|
Presslauer, C., Bizuayehu, T.T., Razmi, K., Fernandes, J.M., Babiak, I. (2016) See-Thru-Gonad zebrafish line: developmental and functional validation. Reproduction (Cambridge, England). 152:507-17
|
Saltari, A., Truzzi, F., Quadri, M., Lotti, R., Palazzo, E., Grisendi, G., Tiso, N., Marconi, A., Pincelli, C. (2016) CD271 downregulation promotes melanoma progression and invasion in 3-dimensional models and in zebrafish. The Journal of investigative dermatology. 136(10):2049-58
|
Sasagawa, S., Nishimura, Y., Hayakawa, Y., Murakami, S., Ashikawa, Y., Yuge, M., Okabe, S., Kawaguchi, K., Kawase, R., Tanaka, T. (2016) E2F4 Promotes Neuronal Regeneration and Functional Recovery after Spinal Cord Injury in Zebrafish. Frontiers in pharmacology. 7:119
|
Sasagawa, S., Nishimura, Y., Koiwa, J., Nomoto, T., Shinto, T., Murakami, S., Yuge, M., Kawaguchi, K., Kawase, R., Miyazaki, T., Tanaka, T. (2016) In vivo detection of mitochondrial dysfunction induced by clinical drugs and disease-associated genes using a novel dye ZMJ214 in zebrafish. ACS Chemical Biology. 11(2):381-8
|
Sasagawa, S., Nishimura, Y., Kon, T., Yamanaka, Y., Murakami, S., Ashikawa, Y., Yuge, M., Okabe, S., Kawaguchi, K., Kawase, R., Tanaka, T. (2016) DNA Damage Response Is Involved in the Developmental Toxicity of Mebendazole in Zebrafish Retina. Frontiers in pharmacology. 7:57
|
Sasagawa, S., Nishimura, Y., Sawada, H., Zhang, E., Okabe, S., Murakami, S., Ashikawa, Y., Yuge, M., Kawaguchi, K., Kawase, R., Mitani, Y., Maruyama, K., Tanaka, T. (2016) Comparative Transcriptome Analysis Identifies CCDC80 as a Novel Gene Associated with Pulmonary Arterial Hypertension. Frontiers in pharmacology. 7:142
|
Singh, A.P., Dinwiddie, A., Mahalwar, P., Schach, U., Linker, C., Irion, U., Nüsslein-Volhard, C. (2016) Pigment Cell Progenitors in Zebrafish Remain Multipotent through Metamorphosis. Developmental Cell. 38(3):316-30
|
Suppiger, A., Eshwar, A.K., Stephan, R., Kaever, V., Eberl, L., Lehner, A. (2016) The DSF type quorum sensing signalling system RpfF/R regulates diverse phenotypes in the opportunistic pathogen Cronobacter. Scientific Reports. 6:18753
|
Takamiya, M., Xu, F., Suhonen, H., Gourain, V., Yang, L., Ho, N.Y., Helfen, L., Schröck, A., Etard, C., Grabher, C., Rastegar, S., Schlunck, G., Reinhard, T., Baumbach, T., Strähle, U. (2016) Melanosomes in pigmented epithelia maintain eye lens transparency during zebrafish embryonic development. Scientific Reports. 6:25046
|
Tang, Q., Moore, J.C., Ignatius, M.S., Tenente, I.M., Hayes, M.N., Garcia, E.G., Torres Yordán, N., Bourque, C., He, S., Blackburn, J.S., Look, A.T., Houvras, Y., Langenau, D.M. (2016) Imaging tumour cell heterogeneity following cell transplantation into optically clear immune-deficient zebrafish. Nature communications. 7:10358
|
|
|
|
|
Enright, J.M., Toomey, M.B., Sato, S.Y., Temple, S.E., Allen, J.R., Fujiwara, R., Kramlinger, V.M., Nagy, L.D., Johnson, K.M., Xiao, Y., How, M.J., Johnson, S.L., Roberts, N.W., Kefalov, V.J., Guengerich, F.P., Corbo, J.C. (2015) Cyp27c1 Red-Shifts the Spectral Sensitivity of Photoreceptors by Converting Vitamin A1 into A2. Current biology : CB. 25(23):3048-57
|
Fehr, A., Eshwar, A.K., Neuhauss, S.C., Ruetten, M., Lehner, A., Vaughan, L. (2015) Evaluation of zebrafish as a model to study the pathogenesis of the opportunistic pathogen Cronobacter turicensis. Emerging microbes & infections. 4:e29
|
|
|
Herrero, A., Pinto, A., Colón-Bolea, P., Casar, B., Jones, M., Agudo-Ibáñez, L., Vidal, R., Tenbaum, S.P., Nuciforo, P., Valdizán, E.M., Horvath, Z., Orfi, L., Pineda-Lucena, A., Bony, E., Keri, G., Rivas, G., Pazos, A., Gozalbes, R., Palmer, H.G., Hurlstone, A., Crespo, P. (2015) Small Molecule Inhibition of ERK Dimerization Prevents Tumorigenesis by RAS-ERK Pathway Oncogenes. Cancer Cell. 28:170-82
|
|
|
|
|
|
|
Miesfeld, J.B., Gestri, G., Clark, B.S., Flinn, M.A., Poole, R.J., Bader, J.R., Besharse, J.C., Wilson, S.W., Link, B.A. (2015) Yap and Taz regulate retinal pigment epithelial cell fate. Development (Cambridge, England). 142(17):3021-32
|
Nagendran, M., Arora, P., Gori, P., Mulay, A., Ray, S., Jacob, T., Sonawane, M. (2015) Canonical Wnt signalling regulates epithelial patterning by modulating levels of laminins in zebrafish appendages. Development (Cambridge, England). 142(2):320-30
|
Olena, A.F., Rao, M.B., Thatcher, E.J., Wu, S.Y., Patton, J.G. (2015) miR-216a regulates snx5, a novel notch signaling pathway component, during zebrafish retinal development. Developmental Biology. 400(1):72-81
|
Taylor, S.M., Alvarez-Delfin, K., Saade, C.J., Thomas, J.L., Thummel, R., Fadool, J.M., Hitchcock, P.F. (2015) The bHLH Transcription Factor NeuroD Governs Photoreceptor Genesis and Regeneration Through Delta-Notch Signaling. Investigative ophthalmology & visual science. 56:7496-7515
|
Wu, L., Wary, K.K., Revskoy, S., Gao, X., Tsang, K., Komarova, Y.A., Rehman, J., Malik, A.B. (2015) Histone Demethylases KDM4A and KDM4C Regulate Differentiation of Embryonic Stem Cells to Endothelial Cells. Stem Cell Reports. 5(1):10-21
|
Xu, H., Dong, X., Zhang, Z., Yang, M., Wu, X., Liu, H., Lao, Q., Li, C. (2015) Assessment of immunotoxicity of dibutyl phthalate using live zebrafish embryos. Fish & shellfish immunology. 45(2):286-92
|
Yang, Z., Mei, L., Xia, F., Luo, Q., Fu, L., Gong, H. (2015) Dual-slit confocal light sheet microscopy for in vivo whole-brain imaging of zebrafish. Biomedical Optics Express. 6:1797-1811
|
|
|
|
|
|
|
Hu, W.F., Pomp, O., Ben-Omran, T., Kodani, A., Henke, K., Mochida, G.H., Yu, T.W., Woodworth, M.B., Bonnard, C., Raj, G.S., Tan, T.T., Hamamy, H., Masri, A., Shboul, M., Al Saffar, M., Partlow, J.N., Al-Dosari, M., Alazami, A., Alowain, M., Alkuraya, F.S., Reiter, J.F., Harris, M.P., Reversade, B., Walsh, C.A. (2014) Katanin p80 Regulates Human Cortical Development by Limiting Centriole and Cilia Number. Neuron. 84:1240-1257
|
|
|
|
|
Krauss, J., Frohnhöfer, H.G., Walderich, B., Maischein, H.M., Weiler, C., Irion, U., Nüsslein-Volhard, C. (2014) Endothelin signalling in iridophore development and stripe pattern formation of zebrafish. Biology Open. 3(6):503-9
|
|
|
|
|
Perathoner, S., Daane, J.M., Henrion, U., Seebohm, G., Higdon, C.W., Johnson, S.L., Nüsslein-Volhard, C., and Harris, M.P. (2014) Bioelectric signaling regulates size in zebrafish fins. PLoS Genetics. 10(1):e1004080
|
|
|
|
|
Sonal, ., Sidhaye, J., Phatak, M., Banerjee, S., Mulay, A., Deshpande, O., Bhide, S., Jacob, T., Gehring, I., Nuesslein-Volhard, C., Sonawane, M. (2014) Myosin Vb Mediated Plasma Membrane Homeostasis Regulates Peridermal Cell Size and Maintains Tissue Homeostasis in the Zebrafish Epidermis. PLoS Genetics. 10:e1004614
|
|
|
|
|
|
|
|
|
|
|
Dabir, D.V., Hasson, S.A., Setoguchi, K., Johnson, M.E., Wongkongkathep, P., Douglas, C.J., Zimmerman, J., Damoiseaux, R., Teitell, M.A., and Koehler, C.M. (2013) A small molecule inhibitor of redox-regulated protein translocation into mitochondria. Developmental Cell. 25(1):81-92
|
|
|
Dooley, C.M., Schwarz, H., Mueller, K.P., Mongera, A., Konantz, M., Neuhauss, S.C., Nüsslein-Volhard, C., and Geisler, R. (2013) Slc45a2 and V-ATPase are regulators of melanosomal pH homeostasis in zebrafish, providing a mechanism for human pigment evolution and disease. Pigment cell & melanoma research. 26(2):205-217
|
Hou, Y., Chu, M., Du, F.F., Lei, J.Y., Chen, Y., Zhu, R.Y., Gong, X.H., Ma, X., and Jin, J. (2013) Recombinant disintegrin domain of ADAM15 inhibits the proliferation and migration of Bel-7402 cells. Biochemical and Biophysical Research Communications. 435(4):640-645
|
Krauss, J., Astrinidis, P., Frohnhöfer, H.G., Walderich, B., and Nüsslein-Volhard, C. (2013) transparent, a gene affecting stripe formation in Zebrafish, encodes the mitochondrial protein Mpv17 that is required for iridophore survival. Biology Open. 2(7):703-710
|
Lenkowski, J.R., Qin, Z., Sifuentes, C.J., Thummel, R., Soto, C.M., Moens, C.B., Raymond, P.A.. (2013) Retinal regeneration in adult zebrafish requires regulation of TGFβ signaling. Glia. 61(10):1687-1697
|
|
|
Nelson, C.M., Ackerman, K.M., O'Hayer, P., Bailey, T.J., Gorsuch, R.A., and Hyde, D.R. (2013) Tumor Necrosis Factor-Alpha Is Produced by Dying Retinal Neurons and Is Required for Muller Glia Proliferation during Zebrafish Retinal Regeneration. The Journal of neuroscience : the official journal of the Society for Neuroscience. 33(15):6524-6539
|
|
|
Svahn, A.J., Graeber, M.B., Ellett, F., Lieschke, G.J., Rinkwitz, S., Bennett, M.R., and Becker, T.S. (2013) Development of ramified microglia from early macrophages in the zebrafish optic tectum. Developmental Neurobiology. 73(1):60-71
|
|
|
Biyashev, D., Veliceasa, D., Topczewski, J., Topczewska, J.M., Mizgirev, I., Vinokour, E., Reddi, A.L., Licht, J.D., Revskoy, S.Y., and Volpert, O.V. (2012) MiR-27b controls venous specification and tip cell fate. Blood. 119(11):2679-2687
|
|
|
|
|
Huber-Reggi, S.P., Chen, C.C., Grimm, L., Straumann, D., Neuhauss, S.C., and Huang, M.Y. (2012) Severity of Infantile Nystagmus Syndrome-Like Ocular Motor Phenotype Is Linked to the Extent of the Underlying Optic Nerve Projection Defect in Zebrafish belladonna Mutant. The Journal of neuroscience : the official journal of the Society for Neuroscience. 32(50):18079-18086
|
|
|
Kim, D., Singha, S., Wang, T., Seo, E., Lee, J.H., Lee, S.J., Kim, K.H., and Ahn, K.H. (2012) In vivo two-photon fluorescent imaging of fluoride with a desilylation-based reactive probe. Chemical communications (Cambridge, England). 48(82):10243-10245
|
|
|
Nelson, C.M., Gorsuch, R.A., Bailey, T.J., Ackerman, K.M., Kassen, S.C., and Hyde, D.R. (2012) Stat3 defines three populations of Müller glia and is required for initiating maximal Müller glia proliferation in the regenerating zebrafish retina. The Journal of comparative neurology. 520(18):4294-4311
|
|
|
|
|
Tsetskhladze, Z.R., Canfield, V.A., Ang, K.C., Wentzel, S.M., Reid, K.P., Berg, A.S., Johnson, S.L., Kawakami, K., and Cheng, K.C. (2012) Functional assessment of human coding mutations affecting skin pigmentation using zebrafish. PLoS One. 7(10):e47398
|
Walker, S.L., Ariga, J., Mathias, J.R., Coothankandaswamy, V., Xie, X., Distel, M., Köster, R.W., Parsons, M.J., Bhalla, K.N., Saxena, M.T., and Mumm, J.S. (2012) Automated reporter quantification in vivo: high-throughput screening method for reporter-based assays in zebrafish. PLoS One. 7(1):e29916
|
Wang, L., He, F., Bu, J., Liu, X., Du, W., Dong, J., Cooney, J.D., Dubey, S.K., Shi, Y., Gong, B., Li, J., McBride, P.F., Jia, Y., Lu, F., Soltis, K.A., Lin, Y., Namburi, P., Liang, C., Sundaresan, P., Paw, B.H., Li, D.Y., Phillips, J.D., and Yang, Z. (2012) ABCB6 Mutations Cause Ocular Coloboma. American journal of human genetics. 90(1):40-48
|
Watanabe, K., Nishimura, Y., Nomoto, T., Umemoto, N., Zhang, Z., Zhang, B., Kuroyanagi, J., Shimada, Y., Shintou, T., Okano, M., Miyazaki, T., Imamura, T., and Tanaka, T. (2012) In vivo assessment of the permeability of the blood--brain barrier and blood-retinal barrier to fluorescent indoline derivatives in zebrafish. BMC Neuroscience. 13(1):101
|
|
|
Carvalho, R., de Sonneville, J., Stockhammer, O.W., Savage, N.D., Veneman, W.J., Ottenhoff, T.H., Dirks, R.P., Meijer, A.H., and Spaink, H.P. (2011) A high-throughput screen for tuberculosis progression. PLoS One. 6(2):e16779
|
|
|
Ceol, C.J., Houvras, Y., Jane-Valbuena, J., Bilodeau, S., Orlando, D.A., Battisti, V., Fritsch, L., Lin, W.M., Hollmann, T.J., Ferré, F., Bourque, C., Burke, C.J., Turner, L., Uong, A., Johnson, L.A., Beroukhim, R., Mermel, C.H., Loda, M., Ait-Si-Ali, S., Garraway, L.A., Young, R.A., and Zon, L.I. (2011) The histone methyltransferase SETDB1 is recurrently amplified in melanoma and accelerates its onset. Nature. 471(7339):513-517
|
Fujita, M., Cha, Y.R., Pham, V.N., Sakurai, A., Roman, B.L., Gutkind, J.S., and Weinstein, B.M. (2011) Assembly and patterning of the vascular network of the vertebrate hindbrain. Development (Cambridge, England). 138(9):1705-1715
|
|
|
Qin, Z., Kidd, A.R., Thomas, J.L., Poss, K.D., Hyde, D.R., Raymond, P.A., and Thummel, R. (2011) FGF signaling regulates rod photoreceptor cell maintenance and regeneration in zebrafish. Experimental Eye Research. 93(5):726-34
|
|
|
|
|
van Soest, J.J., Stockhammer, O.W., Ordas, A., Bloemberg, G.V., Spaink, H.P., and Meijer, A.H. (2011) Comparison of static immersion and intravenous injection systems for exposure of zebrafish embryos to the natural pathogen Edwardsiella tarda. BMC immunology. 12(1):58
|
Bailey, T.J., Fossum, S.L., Fimbel, S.M., Montgomery, J.E., and Hyde, D.R. (2010) The inhibitor of phagocytosis, O-phospho-L-serine, suppresses Müller glia proliferation and cone cell regeneration in the light-damaged zebrafish retina. Experimental Eye Research. 91(5):601-612
|
Craig, S.E., Thummel, R., Ahmed, H., Vasta, G.R., Hyde, D., and Hitchcock, P.F. (2010) The Zebrafish Galectin Drgal1-L2 Is Expressed by Proliferating Müller Glia and Photoreceptor Progenitors and Regulates the Regeneration of Rod Photoreceptors. Investigative ophthalmology & visual science. 51(6):3244-3252
|
Fett, M.E., Pilsl, A., Paquet, D., van Bebber, F., Haass, C., Tatzelt, J., Schmid, B., and Winklhofer, K.F. (2010) Parkin Is Protective against Proteotoxic Stress in a Transgenic Zebrafish Model. PLoS One. 5(7):e11783
|
|
|
Matsumura, H., Yoshida, K., Luo, S., Kimura, E., Fujibe, T., Albertyn, Z., Barrero, R.A., Krüger, D.H., Kahl, G., Schroth, G.P., Terauchi, R. (2010) High-throughput SuperSAGE for digital gene expression analysis of multiple samples using next generation sequencing. PLoS One. 5:e12010
|
Smith, A.C., Raimondi, A.R., Salthouse, C.D., Ignatius, M.S., Blackburn, J.S., Mizgirev, I.V., Storer, N.Y., de Jong, J.L., Chen, A.T., Zhou, Y., Revskoy, S., Zon, L.I., and Langenau, D.M. (2010) High-throughput cell transplantation establishes that tumor-initiating cells are abundant in zebrafish T-cell acute lymphoblastic leukemia. Blood. 115(16):3296-3303
|
Thummel, R., Enright, J.M., Kassen, S.C., Montgomery, J.E., Bailey, T.J., and Hyde, D.R. (2010) Pax6a and Pax6b are required at different points in neuronal progenitor cell proliferation during zebrafish photoreceptor regeneration. Experimental Eye Research. 90(5):572-582
|
Tschopp, M., Takamiya, M., Cerveny, K.L., Gestri, G., Biehlmaier, O., Wilson, S.W., Strähle, U., and Neuhauss, S.C. (2010) Funduscopy in adult zebrafish and its application to isolate mutant strains with ocular defects. PLoS One. 5(11):e15427
|
|
|
|
|
|
|
Egan, R.J., Bergner, C.L., Hart, P.C., Cachat, J.M., Canavello, P.R., Elegante, M.F., Elkhayat, S.I., Bartels, B.K., Tien, A.K., Tien, D.H., Mohnot, S., Beeson, E., Glasgow, E., Amri, H., Zukowska, Z., and Kalueff, A.V. (2009) Understanding behavioral and physiological phenotypes of stress and anxiety in zebrafish. Behavioural brain research. 205(1):38-44
|
Kassen, S.C., Thummel, R., Campochiaro, L.A., Harding, M.J., Bennett, N.A., and Hyde, D.R. (2009) CNTF induces photoreceptor neuroprotection and Müller glial cell proliferation through two different signaling pathways in the adult zebrafish retina. Experimental Eye Research. 88(6):1051-1064
|
Marques, I.J., Weiss, F.U., Vlecken, D.H., Nitsche, C., Bakkers, J., Lagendijk, A., Partecke, L.I., Heidecke, C.D., Lerch, M.M., and Bagowski, C.P. (2009) Metastatic behaviour of primary human tumours in a zebrafish xenotransplantation model. BMC cancer. 9:128
|
|
|
|
|
|
|
Jeong, J.Y., Kwon, H.B., Ahn, J.C., Kang, D., Kwon, S.H., Park, J.A., and Kim, K.W. (2008) Functional and developmental analysis of the blood-brain barrier in zebrafish. Brain research bulletin. 75(5):619-628
|
|
|
|
|
Stenkamp, D.L., Satterfield, R., Muhunthan, K., Sherpa, T., Vihtelic, T.S., and Cameron, D. (2008) Age-Related Cone Abnormalities in Zebrafish with Genetic Lesions in Sonic Hedgehog. Investigative ophthalmology & visual science. 49(10):4631-4640
|
Thummel, R., Kassen, S.C., Enright, J.M., Nelson, C.M., Montgomery, J.E., and Hyde, D.R. (2008) Characterization of Müller glia and neuronal progenitors during adult zebrafish retinal regeneration. Experimental Eye Research. 87(5):433-444
|
|
|
Alvarez, Y., Cederlund, M.L., Cottell, D.C., Bill, B.R., Ekker, S.C., Torres-Vazquez, J., Weinstein, B.M., Hyde, D.R., Vihtelic, T.S., and Kennedy, B.N. (2007) Genetic determinants of hyaloid and retinal vasculature in zebrafish. BMC Developmental Biology. 7(1):114
|
|
|
Kassen, S.C., Ramanan, V., Montgomery, J.E., Burket, C.T., Liu, C.G., Vihtelic, T.S., and Hyde, D.R. (2007) Time course analysis of gene expression during light-induced photoreceptor cell death and regeneration in albino zebrafish. Developmental Neurobiology. 67(8):1009-1031
|
Lacosta, A.M., Canudas, J., Gonzalez, C., Muniesa, P., Sarasa, M., and Dominguez, L. (2007) Pax7 identifies neural crest, chromatophore lineages and pigment stem cells during zebrafish development. The International journal of developmental biology. 51(4):327-331
|
McNeill, M.S., Paulsen, J., Bonde, G., Burnight, E., Hsu, M.Y., and Cornell, R.A. (2007) Cell Death of Melanophores in Zebrafish trpm7 Mutant Embryos Depends on Melanin Synthesis. The Journal of investigative dermatology. 127(8):2020-30
|
Walker, M.B., Miller, C.T., Swartz, M.E., Eberhart, J.K., and Kimmel, C.B. (2007) phospholipase C, beta 3 is required for Endothelin1 regulation of pharyngeal arch patterning in zebrafish. Developmental Biology. 304(1):194-207
|
|
|
|
|
Asai, Y., Chan, D.K., Starr, C.J., Kappler, J.A., Kollmar, R., and Hudspeth, A.J. (2006) Mutation of the atrophin2 gene in the zebrafish disrupts signaling by fibroblast growth factor during development of the inner ear. Proceedings of the National Academy of Sciences of the United States of America. 103(24):9069-9074
|
Ason, B., Darnell, D.K., Wittbrodt, B., Berezikov, E., Kloosterman, W.P., Wittbrodt, J., Antin, P.B., and Plasterk, R.H. (2006) Differences in vertebrate microRNA expression. Proceedings of the National Academy of Sciences of the United States of America. 103(39):14385-14389
|
Kloosterman, W.P., Steiner, F.A., Berezikov, E., de Bruijn, E., van de Belt, J., Verheul, M., Cuppen, E., and Plasterk, R.H. (2006) Cloning and expression of new microRNAs from zebrafish. Nucleic acids research. 34(9):2558-2569
|
|
|
|
|
|
|
|
|
Schonthaler, H.B., Lampert, J.M., von Lintig, J., Schwarz, H., Geisler, R., and Neuhauss, S.C. (2005) A mutation in the silver gene leads to defects in melanosome biogenesis and alterations in the visual system in the zebrafish mutant fading vision. Developmental Biology. 284(2):421-436
|
Sonawane, M., Carpio, Y., Geisler, R., Schwarz, H., Maischein, H.M., and Nuesslein-Volhard, C. (2005) Zebrafish penner/lethal giant larvae 2 functions in hemidesmosome formation, maintenance of cellular morphology and growth regulation in the developing basal epidermis. Development (Cambridge, England). 132(14):3255-3265
|
|
|
Crump, J.G., Maves, L., Lawson, N.D., Weinstein, B.M., and Kimmel, C.B. (2004) An essential role for Fgfs in endodermal pouch formation influences later craniofacial skeletal patterning. Development (Cambridge, England). 131(22):5703-5716
|
|
|
|
|
Page-McCaw, P.S., Chung, S.C., Muto, A., Roeser, T., Staub, W., Finger-Baier, K.C., Korenbrot, J.I., and Baier, H. (2004) Retinal network adaptation to bright light requires tyrosinase. Nature Neuroscience. 7(12):1329-1336
|
|
|
|
|
|
|
Kobayashi, M., Itoh, K., Suzuki, T., Osanai, H., Nishikawa, K., Katoh, Y., Takagi, Y., and Yamamoto, M. (2002) Identification of the interactive interface and phylogenic conservation of the Nrf2-Keap1 system. Genes to cells : devoted to molecular & cellular mechanisms. 7(8):807-820
|
Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A. (2002) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 99(26):16899-903
|
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|
|
Geisler, R., Rauch, G.J., Baier, H., van Bebber, F., Brobeta, L., Dekens, M.P., Finger, K., Fricke, C., Gates, M.A., Geiger, H., Geiger-Rudolph, S., Gilmour, D., Glaser, S., Gnugge, L., Habeck, H., Hingst, K., Holley, S., Keenan, J., Kirn, A., Knaut, H., Lashkari, D., Maderspacher, F., Martyn, U., Neuhauss, S., Neumann, C., Nicolson, T., Pelegri, F., Ray, R., Rick, J.M., Roehl, H., Roeser, T., Schauerte, H.E., Schier, A.F., Schönberger, U., Schönthaler, H.-B., Schulte-Merker, S., Seydler, C., Talbot, W.S., Weiler, C., Nüsslein-Volhard, C., and Haffter, P. (1999) A radiation hybrid map of the zebrafish genome. Nature Genetics. 23(1):86-89
|
Neuhauss, S.C.F., Biehlmaier, O., Seeliger, M.W., Das, T., Kohler, K., Harris, W.A., and Baier, H. (1999) Genetic disorders of vision revealed by a behavioral screen of 400 essential loci in zebrafish. The Journal of neuroscience : the official journal of the Society for Neuroscience. 19(19):8603-8615
|
Parichy, D.M., Rawls, J.F., Pratt, S.J., Whitfield, T.T., and Johnson, S.L. (1999) Zebrafish sparse corresponds to an orthologue of c-kit and is required for the morphogenesis of a subpopulation of melanocytes, but is not essential for hematopoiesis or primordial germ cell development. Development (Cambridge, England). 126(15):3425-3436
|
|
|
Bauer, H., Meier, A., Hild, M., Stachel, S., Economides, A., Hazelett, D., Harland, R.M., and Hammerschmidt, M. (1998) Follistatin and Noggin are excluded from the zebrafish organizer. Developmental Biology. 204:488-507
|
|
|
|
|
|
|
Haffter, P., Granato, M., Brand, M., Mullins, M.C., Hammerschmidt, M., Kane, D.A., Odenthal, J., van Eeden, F.J., Jiang, Y.J., Heisenberg, C.P., Kelsh, R.N., Furutani-Seiki, M., Vogelsang, E., Beuchle, D., Schach, U., Fabian, C., and Nüsslein-Volhard, C. (1996) The identification of genes with unique and essential functions in the development of the zebrafish, Danio rerio. Development (Cambridge, England). 123:1-36
|
Haffter, P., Odenthal, J., Mullins, M.C., Lin, S., Farrell, M.J., Vogelsang, E., Haas, F., Brand, M., van Eeden, F.J.M., Furutani-Seiki, M., Granato, M., Hammerschmidt, M., Heisenberg, C.P., Jiang, Y.J., Kane, D.A., Kelsh, R.N., Hopkins, N., and Nüsslein-Volhard, C. (1996) Mutations affecting pigmentation and shape of the adult zebrafish. Development genes and evolution. 206(4):260-276
|
|
|
Kelsh, R.N., Brand, M., Jiang, Y.J., Heisenberg, C.P., Lin, S., Haffter, P., Odenthal, J., Mullins, M.C., van Eeden, F.J., Furutani-Seiki, M., Granato, M., Hammerschmidt, M., Kane, D.A., Warga, R.M., Beuchle, D., Vogelsang, L., and Nüsslein-Volhard, C. (1996) Zebrafish pigmentation mutations and the processes of neural crest development. Development (Cambridge, England). 123:369-389
|
van der, Hoeven, F., Sordino, P., Fraudeau, N., Izpisúa Belmonte, J.C., and Duboule, D. (1996) Teleost HoxD and HoxA genes: comparison with tetrapods and functional evolution of the HOXD complex. Mechanisms of Development. 54(1):9-21
|
|
|
|
|
Postlethwait, J., Johnson, S., Midson, C.N., Talbot, W.S., Gates, M., Ballenger, E.W., Africa, D., Andrews, R., Carl, T., Eisen, J.S., Horne, S., Kimmel, C.B., Hutchinson, M., Johnson, M., and Rodriguez, A. (1994) A genetic linkage map for the zebrafish. Science (New York, N.Y.). 264:699-703
|
|
|
|
|
|
|
|
|
|
|
|
|
