ZFIN

ZFIN ID: ZDB-GENE-000607-83

ZFIN ID: ZDB-GENE-000607-83

CITATIONS (149 total)

Gene Name:	keratin 4
Gene Symbol:	krt4

Liu, Z., Meng, Y., Ishikura, A., Kawakami, A. (2024) Live tracking of basal stem cells of the epidermis during growth, homeostasis and injury response in zebrafish. Development (Cambridge, England). 151(2):

Cuevas, M., Terhune, E., Wethey, C., James, M., Netsanet, R., Grofova, D., Monley, A., Hadley Miller, N. (2023) Cytoskeletal Keratins Are Overexpressed in a Zebrafish Model of Idiopathic Scoliosis. Genes. 14(5):

Tamás, S.X., Roux, B.T., Vámosi, B., Dehne, F.G., Török, A., Fazekas, L., Enyedi, B. (2023) A genetically encoded sensor for visualizing leukotriene B4 gradients in vivo. Nature communications. 14:46104610

Capon, S.J., Uribe, V., Dominado, N., Ehrlich, O., Smith, K.A. (2022) Endocardial identity is established during early somitogenesis by Bmp signalling acting upstream of npas4l and etv2. Development (Cambridge, England). 149(9):

Chang, N.C., Rovira, Q., Wells, J.N., Feschotte, C., Vaquerizas, J.M. (2022) Zebrafish transposable elements show extensive diversification in age, genomic distribution, and developmental expression. Genome research. 32(7):1408-1423

Haraoka, Y., Akieda, Y., Nagai, Y., Mogi, C., Ishitani, T. (2022) Zebrafish imaging reveals TP53 mutation switching oncogene-induced senescence from suppressor to driver in primary tumorigenesis. Nature communications. 13:1417

Ho, M., Thompson, B., Fisk, J.N., Nebert, D.W., Bruford, E.A., Vasiliou, V., Bunick, C.G. (2022) Update of the keratin gene family: evolution, tissue-specific expression patterns, and relevance to clinical disorders. Human genomics. 16:1

Jia, W., Guan, Z., Shi, S., Xiang, K., Chen, P., Tan, F., Ullah, N., Diaby, M., Guo, M., Song, C., Gao, B. (2022) The Annotation of Zebrafish Enhancer Trap Lines Generated with PB Transposon. Current issues in molecular biology. 44:2614-2621

Liu, Y., Kassack, M.E., McFaul, M.E., Christensen, L.N., Siebert, S., Wyatt, S.R., Kamei, C.N., Horst, S., Arroyo, N., Drummond, I.A., Juliano, C.E., Draper, B.W. (2022) Single-cell transcriptome reveals insights into the development and function of the zebrafish ovary. eLIFE. 11:

Lukowicz-Bedford, R.M., Farnsworth, D.R., Miller, A.C. (2022) Connexinplexity: The spatial and temporal expression of connexin genes during vertebrate organogenesis. G3 (Bethesda). 12(5):

Buono, L., Corbacho, J., Naranjo, S., Almuedo-Castillo, M., Moreno-Marmol, T., de la Cerda, B., Sanbria-Reinoso, E., Polvillo, R., Díaz-Corrales, F.J., Bogdanovic, O., Bovolenta, P., Martínez-Morales, J.R. (2021) Analysis of gene network bifurcation during optic cup morphogenesis in zebrafish. Nature communications. 12:3866

Duszyc, K., Gomez, G.A., Lagendijk, A.K., Yau, M.K., Nanavati, B.N., Gliddon, B.L., Hall, T.E., Verma, S., Hogan, B.M., Pitson, S.M., Fairlie, D.P., Parton, R.G., Yap, A.S. (2021) Mechanotransduction activates RhoA in the neighbors of apoptotic epithelial cells to engage apical extrusion. Current biology : CB. 31(6):1326-1336.e5

Fadul, J., Zulueta-Coarasa, T., Slattum, G.M., Redd, N.M., Jin, M.F., Redd, M.J., Daetwyler, S., Hedeen, D., Huisken, J., Rosenblatt, J. (2021) KRas-transformed epithelia cells invade and partially dedifferentiate by basal cell extrusion. Nature communications. 12:7180

Metikala, S., Casie Chetty, S., Sumanas, S. (2021) Single-cell transcriptome analysis of the zebrafish embryonic trunk. PLoS One. 16:e0254024

Shen, D., Song, C., Miskey, C., Chan, S., Guan, Z., Sang, Y., Wang, Y., Chen, C., Wang, X., Müller, F., Ivics, Z., Gao, B. (2021) A native, highly active Tc1/mariner transposon from zebrafish (ZB) offers an efficient genetic manipulation tool for vertebrates. Nucleic acids research. 49:2126-2140

Spreafico, M., Cafora, M., Bragato, C., Capitanio, D., Marasca, F., Bodega, B., De Palma, C., Mora, M., Gelfi, C., Marozzi, A., Pistocchi, A. (2021) Targeting HDAC8 to ameliorate skeletal muscle differentiation in Duchenne muscular dystrophy. Pharmacological research. 170:105750

Willoughby, P.M., Allen, M., Yu, J., Korytnikov, R., Chen, T., Liu, Y., So, I., Macpherson, N., Mitchell, J.A., Fernandez-Gonzalez, R., Bruce, A.E.E. (2021) The recycling endosome protein Rab25 coordinates collective cell movements in the zebrafish surface epithelium. eLIFE. 10:

Zhou, T., Zhou, B., Zhao, Y., Li, Q., Song, G., Zhu, Z., Long, Y., Cui, Z. (2021) Development of a Mucus Gland Bioreactor in Loach Paramisgurnus dabryanus. International Journal of Molecular Sciences. 22(2):

Armistead, J., Hatzold, J., van Roye, A., Fahle, E., Hammerschmidt, M. (2020) Entosis and apical cell extrusion constitute a tumor-suppressive mechanism downstream of Matriptase. The Journal of cell biology. 219(2):

Carroll, S.H., Macias Trevino, C., Li, E.B., Kawasaki, K., Myers, N., Hallett, S.A., Alhazmi, N., Cotney, J., Carstens, R.P., Liao, E.C. (2020) An Irf6-Esrp1/2 regulatory axis controls midface morphogenesis in vertebrates. Development (Cambridge, England). 147(24):

Chestnut, B., Casie Chetty, S., Koenig, A.L., Sumanas, S. (2020) Single-cell transcriptomic analysis identifies the conversion of zebrafish Etv2-deficient vascular progenitors into skeletal muscle. Nature communications. 11:2796

Han, C.R., Holmsen, E., Carrington, B., Bishop, K., Zhu, Y.J., Starost, M., Meltzer, P., Sood, R., Liu, P., Cheng, S.Y. (2020) Generation of novel genetic models to dissect resistance to thyroid hormone receptor alpha in zebrafish. Thyroid : official journal of the American Thyroid Association. 30(2):314-328

Hou, Y., Lee, H.J., Chen, Y., Ge, J., Osman, F.O.I., McAdow, A.R., Mokalled, M.H., Johnson, S.L., Zhao, G., Wang, T. (2020) Cellular diversity of the regenerating caudal fin. Science advances. 6:eaba2084

Iwanami, N., Takeshita, K., Lawir, D.F., Suetake, I., Tajima, S., Sikora, K., Trancoso, I., ÓMeara, C., Siamishi, I., Takahama, Y., Furutani-Seiki, M., Kondoh, H., Yonezawa, Y., Schorpp, M., Boehm, T. (2020) Epigenetic Protection of Vertebrate Lymphoid Progenitor Cells by Dnmt1. iScience. 23:101260

Jelcic, M., Wang, K., Hui, K.L., Cai, X.C., Enyedi, B., Luo, M., Niethammer, P. (2020) A Photo-clickable ATP-Mimetic Reveals Nucleotide Interactors in the Membrane Proteome. Cell chemical biology. 27:1073-1083.e12

Jia, H., Song, Y., Huang, B., Ge, W., Luo, K.Q. (2020) Engineered Sensor Zebrafish for Fast Detection and Real-Time Tracking of Apoptosis at Single-Cell Resolution in Live Animals. ACS sensors. 5(3):823-830

Liu, H., Duncan, K., Helverson, A., Kumari, P., Mumm, C., Xiao, Y., Carlson, J.C., Darbellay, F., Visel, A., Leslie, E., Breheny, P., Erives, A.J., Cornell, R.A. (2020) Analysis of zebrafish periderm enhancers facilitates identification of a regulatory variant near human KRT8/18. eLIFE. 9:

Maeta, M., Kataoka, M., Nishiya, Y., Ogino, K., Kashima, M., Hirata, H. (2020) RNA polymerase II subunit D is essential for zebrafish development. Scientific Reports. 10:13213

Shu, T., Zhai, G., Pradhan, A., Olsson, P.E., Yin, Z. (2020) Zebrafish cyp17a1 knockout reveals that androgen-mediated signaling is important for male brain sex differentiation. General and comparative endocrinology. 295:113490

Takeuchi, Y., Narumi, R., Akiyama, R., Vitiello, E., Shirai, T., Tanimura, N., Kuromiya, K., Ishikawa, S., Kajita, M., Tada, M., Haraoka, Y., Akieda, Y., Ishitani, T., Fujioka, Y., Ohba, Y., Yamada, S., Hosokawa, Y., Toyama, Y., Matsui, T., Fujita, Y. (2020) Calcium Wave Promotes Cell Extrusion. Current biology : CB. 30(4):670-681.e6

Cokus, S.J., De La Torre, M., Medina, E.F., Rasmussen, J.P., Ramirez-Gutierrez, J., Sagasti, A., Wang, F. (2019) Tissue-Specific Transcriptomes Reveal Gene Expression Trajectories in Two Maturing Skin Epithelial Layers in Zebrafish Embryos. G3 (Bethesda). 9(10):3439-3452

Barta, C.L., Liu, H., Chen, L., Giffen, K.P., Li, Y., Kramer, K.L., Beisel, K.W., He, D.Z. (2018) RNA-seq transcriptomic analysis of adult zebrafish inner ear hair cells. Scientific data. 5:180005

Bhattacharya, S., Gargiulo, D., Iovine, M.K. (2018) Simplet-dependent regulation of β-catenin signaling influences skeletal patterning downstream of Cx43. Development (Cambridge, England). 145(23):

Farrell, J.A., Wang, Y., Riesenfeld, S.J., Shekhar, K., Regev, A., Schier, A.F. (2018) Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis. Science (New York, N.Y.). 360(6392)

Iwasaki, M., Kuroda, J., Kawakami, K., Wada, H. (2018) Epidermal regulation of bone morphogenesis through the development and regeneration of osteoblasts in the zebrafish scale. Developmental Biology. 437(2):105-119

Kuroda, J., Iwane, A.H., Kondo, S. (2018) Roles of basal keratinocytes in actinotrichia formation. Mechanisms of Development. 153:54-63

Schepis, A., Barker, A., Srinivasan, Y., Balouch, E., Zheng, Y., Lam, I., Clay, H., Hsiao, C.D., Coughlin, S.R. (2018) Protease signaling regulates apical cell extrusion, cell contacts, and proliferation in epithelia. The Journal of cell biology. 217(3):1097-1112

Shen, D., Xue, S., Chan, S., Sang, Y., Wang, S., Wang, Y., Chen, C., Gao, B., Mueller, F., Song, C. (2018) Enhancer Trapping and Annotation in Zebrafish Mediated with Sleeping Beauty, piggyBac and Tol2 Transposons. Genes. 9(12)

Shibata, E., Ando, K., Murase, E., Kawakami, A. (2018) Heterogeneous fates and dynamic rearrangement of regenerative epidermis-derived cells during zebrafish fin regeneration. Development (Cambridge, England). 145(8)

Zhou, W., Pal, A.S., Hsu, A.Y., Gurol, T., Zhu, X., Wirbisky-Hershberger, S.E., Freeman, J.L., Kasinski, A.L., Deng, Q. (2018) MicroRNA-223 Suppresses the Canonical NF-κB Pathway in Basal Keratinocytes to Dampen Neutrophilic Inflammation. Cell Reports. 22:1810-1823

Bayés, À., Collins, M.O., Reig-Viader, R., Gou, G., Goulding, D., Izquierdo, A., Choudhary, J.S., Emes, R.D., Grant, S.G. (2017) Evolution of complexity in the zebrafish synapse proteome. Nature communications. 8:14613

Eshete, M.A., Liu, H., Li, M., Adeyemo, W.L., Gowans, L.J.J., Mossey, P.A., Busch, T., Deressa, W., Donkor, P., Olaitan, P.B., Aregbesola, B.S., Braimah, R.O., Oseni, G.O., Oginni, F., Audu, R., Onwuamah, C., James, O., Augustine-Akpan, E., Rahman, L.A., Ogunlewe, M.O., Arthur, F.K.N., Bello, S.A., Agbenorku, P., Twumasi, P., Abate, F., Hailu, T., Demissie, Y., Hailu, A., Plange-Rhule, G., Obiri-Yeboah, S., Dunnwald, M.M., Gravem, P.E., Marazita, M.L., Adeyemo, A.A., Murray, J.C., Cornell, R.A., Butali, A. (2017) Loss-of-Function GRHL3 Variants Detected in African Patients with Isolated Cleft Palate. Journal of dental research. 97(1):41-48

Eskova, A., Chauvigné, F., Maischein, H.M., Ammelburg, M., Cerdà, J., Nüsslein-Volhard, C., Irion, U. (2017) Gain-of-function mutations of mau/DrAqp3a influence zebrafish pigment pattern formation through the tissue environment. Development (Cambridge, England). 144(11):2059-2069

Li, E.B., Truong, D., Hallett, S.A., Mukherjee, K., Schutte, B.C., Liao, E.C. (2017) Rapid functional analysis of computationally complex rare human IRF6 gene variants using a novel zebrafish model. PLoS Genetics. 13:e1007009

Roh-Johnson, M., Shah, A.N., Stonick, J.A., Poudel, K.R., Kargl, J., Yang, G.H., di Martino, J., Hernandez, R.E., Gast, C.E., Zarour, L.R., Antoku, S., Houghton, A.M., Bravo-Cordero, J.J., Wong, M.H., Condeelis, J., Moens, C.B. (2017) Macrophage-Dependent Cytoplasmic Transfer during Melanoma Invasion In Vivo. Developmental Cell. 43:549-562.e6

Banerji, R., Eble, D.M., Iovine, M.K., Skibbens, R.V. (2016) Esco2 regulates cx43 expression during skeletal regeneration in the zebrafish fin. Developmental Dynamics : an official publication of the American Association of Anatomists. 245(1):7-21

Braasch, I., Gehrke, A.R., Smith, J.J., Kawasaki, K., Manousaki, T., Pasquier, J., Amores, A., Desvignes, T., Batzel, P., Catchen, J., Berlin, A.M., Campbell, M.S., Barrell, D., Martin, K.J., Mulley, J.F., Ravi, V., Lee, A.P., Nakamura, T., Chalopin, D., Fan, S., Wcisel, D., Cañestro, C., Sydes, J., Beaudry, F.E., Sun, Y., Hertel, J., Beam, M.J., Fasold, M., Ishiyama, M., Johnson, J., Kehr, S., Lara, M., Letaw, J.H., Litman, G.W., Litman, R.T., Mikami, M., Ota, T., Saha, N.R., Williams, L., Stadler, P.F., Wang, H., Taylor, J.S., Fontenot, Q., Ferrara, A., Searle, S.M., Aken, B., Yandell, M., Schneider, I., Yoder, J.A., Volff, J.N., Meyer, A., Amemiya, C.T., Venkatesh, B., Holland, P.W., Guiguen, Y., Bobe, J., Shubin, N.H., Di Palma, F., Alföldi, J., Lindblad-Toh, K., Postlethwait, J.H. (2016) The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nature Genetics. 48(4):427-37

Hatzold, J., Beleggia, F., Herzig, H., Altmüller, J., Nürnberg, P., Bloch, W., Wollnik, B., Hammerschmidt, M. (2016) Tumor suppression in basal keratinocytes via dual non-cell-autonomous functions of a Na,K-ATPase beta subunit. eLIFE. 5:e14277

Leslie, E.J., Liu, H., Carlson, J.C., Shaffer, J.R., Feingold, E., Wehby, G., Laurie, C.A., Jain, D., Laurie, C.C., Doheny, K.F., McHenry, T., Resick, J., Sanchez, C., Jacobs, J., Emanuele, B., Vieira, A.R., Neiswanger, K., Standley, J., Czeizel, A.E., Deleyiannis, F., Christensen, K., Munger, R.G., Lie, R.T., Wilcox, A., Romitti, P.A., Field, L.L., Padilla, C.D., Cutiongco-de la Paz, E.M., Lidral, A.C., Valencia-Ramirez, L.C., Lopez-Palacio, A.M., Valencia, D.R., Arcos-Burgos, M., Castilla, E.E., Mereb, J.C., Poletta, F.A., Orioli, I.M., Carvalho, F.M., Hecht, J.T., Blanton, S.H., Buxó, C.J., Butali, A., Mossey, P.A., Adeyemo, W.L., James, O., Braimah, R.O., Aregbesola, B.S., Eshete, M.A., Deribew, M., Koruyucu, M., Seymen, F., Ma, L., de Salamanca, J.E., Weinberg, S.M., Moreno, L., Cornell, R.A., Murray, J.C., Marazita, M.L. (2016) A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3. American journal of human genetics. 98(4):744-54

Lisse, T.S., Middleton, L.J., Pellegrini, A.D., Martin, P.B., Spaulding, E.L., Lopes, O., Brochu, E.A., Carter, E.V., Waldron, A., Rieger, S. (2016) Paclitaxel-induced epithelial damage and ectopic MMP-13 expression promotes neurotoxicity in zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 113(15):E2189-98

Liu, H., Leslie, E.J., Jia, Z., Smith, T., Eshete, M., Butali, A., Dunnwald, M., Murray, J., Cornell, R.A. (2016) Irf6 directly regulates Klf17 in zebrafish periderm and Klf4 in murine oral epithelium, and dominant-negative KLF4 variants are present in patients with cleft lip and palate. Human molecular genetics. 25(4):766-76

Mishima, Y., Tomari, Y. (2016) Codon Usage and 3' UTR Length Determine Maternal mRNA Stability in Zebrafish. Molecular Cell. 61:874-885

Richardson, R., Metzger, M., Knyphausen, P., Ramezani, T., Slanchev, K., Kraus, C., Schmelzer, E., Hammerschmidt, M. (2016) Re-epithelialization of cutaneous wounds in adult zebrafish uses a combination of mechanisms at play during wound closure in embryonic and adult mammals. Development (Cambridge, England). 143(12):2077-88

Chen, H., Beasley, A., Hu, Y., Chen, X. (2015) A Zebrafish Model for Studies on Esophageal Epithelial Biology. PLoS One. 10:e0143878

Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549

Mesquita, S.R., van Drooge, B.L., Oliveira, E., Grimalt, J.O., Barata, C., Vieira, N., Guimarães, L., Piña, B. (2015) Differential embryotoxicity of the organic pollutants in rural and urban air particles. Environmental pollution (Barking, Essex : 1987). 206:535-542

Ramezani, T., Laux, D.W., Bravo, I.R., Tada, M., Feng, Y. (2015) Live Imaging of Innate Immune and Preneoplastic Cell Interactions Using an Inducible Gal4/UAS Expression System in Larval Zebrafish Skin. Journal of visualized experiments : JoVE. (96)

Rasmussen, J.P., Sack, G.S., Martin, S.M., Sagasti, A. (2015) Vertebrate epidermal cells are broad-specificity phagocytes that clear sensory axon debris. The Journal of neuroscience : the official journal of the Society for Neuroscience. 35:559-70

Shiau, C.E., Kaufman, Z., Meireles, A.M., Talbot, W.S. (2015) Differential Requirement for irf8 in Formation of Embryonic and Adult Macrophages in Zebrafish. PLoS One. 10:e0117513

Tsujimura, T., Masuda, R., Ashino, R., Kawamura, S. (2015) Spatially differentiated expression of quadruplicated green-sensitive RH2 opsin genes in zebrafish is determined by proximal regulatory regions and gene order to the locus control region. BMC Genetics. 16:130

Chen, C.H., Lin, D.S., Cheng, C.W., Lin, C.J., Lo, Y.K., Yen, C.C., Lee, A.Y., Hsiao, C.D. (2014) Cdc6 cooperates with c-Myc to promote genome instability and EMT in zebrafish. Oncotarget. 5(15):6300-11

Fischer, B., Metzger, M., Richardson, R., Knyphausen, P., Ramezani, T., Franzen, R., Schmelzer, E., Bloch, W., Carney, T.J., and Hammerschmidt, M. (2014) p53 and TAp63 promote keratinocyte proliferation and differentiation in breeding tubercles of the zebrafish. PLoS Genetics. 10(1):e1004048

Freisinger, C.M., Huttenlocher, A. (2014) Live Imaging and Gene Expression Analysis in Zebrafish Identifies a Link between Neutrophils and Epithelial to Mesenchymal Transition. PLoS One. 9:e112183

Gault, W.J., Enyedi, B., Niethammer, P. (2014) Osmotic surveillance mediates rapid wound closure through nucleotide release. The Journal of cell biology. 207:767-82

Hall, C.J., Boyle, R.H., Sun, X., Wicker, S.M., Misa, J.P., Krissansen, G.W., Print, C.G., Crosier, K.E., Crosier, P.S. (2014) Epidermal cells help coordinate leukocyte migration during inflammation through fatty acid-fuelled matrix metalloproteinase production. Nature communications. 5:3880

Kotkamp, K., Mössner, R., Allen, A., Onichtchouk, D., and Driever, W. (2014) A Pou5f1/Oct4 dependent Klf2a, Klf2b, and Klf17 regulatory sub-network contributes to EVL and ectoderm development during zebrafish embryogenesis. Developmental Biology. 385(2):433-47

Lee, R.T., Asharani, P.V., and Carney, T.J. (2014) Basal keratinocytes contribute to all strata of the adult zebrafish epidermis. PLoS One. 9(1):e84858

Lepage, S.E., Tada, M., and Bruce, A.E. (2014) Zebrafish Dynamin is required for maintenance of enveloping layer integrity and the progression of epiboly. Developmental Biology. 385(1):52-66

Peyrard-Janvid, M., Leslie, E.J., Kousa, Y.A., Smith, T.L., Dunnwald, M., Magnusson, M., Lentz, B.A., Unneberg, P., Fransson, I., Koillinen, H.K., Rautio, J., Pegelow, M., Karsten, A., Basel-Vanagaite, L., Gordon, W., Andersen, B., Svensson, T., Murray, J.C., Cornell, R.A., Kere, J., and Schutte, B.C. (2014) Dominant mutations in GRHL3 cause Van der Woude Syndrome and disrupt oral periderm development. American journal of human genetics. 94(1):23-32

Roberts, J.A., Miguel-Escalada, I., Slovik, K.J., Walsh, K.T., Hadzhiev, Y., Sanges, R., Stupka, E., Marsh, E.K., Balciuniene, J., Balciunas, D., and Müller, F. (2014) Targeted transgene integration overcomes variability of position effects in zebrafish. Development (Cambridge, England). 141(3):715-724

Wehner, D., Cizelsky, W., Vasudevaro, M.D., Özhan, G., Haase, C., Kagermeier-Schenk, B., Röder, A., Dorsky, R.I., Moro, E., Argenton, F., Kühl, M., and Weidinger, G. (2014) Wnt/β-Catenin Signaling Defines Organizing Centers that Orchestrate Growth and Differentiation of the Regenerating Zebrafish Caudal Fin. Cell Reports. 6(3):467-481

Dalton, L.E., Kamarashev, J., Ramirez, I.R., White, G., Malliri, A., and Hurlstone, A. (2013) Constitutive Rac Activation is not Sufficient to Initiate Melanocyte Neoplasia but Accelerates Malignant Progression. The Journal of investigative dermatology. 133(6):1572-81

de la Garza, G., Schleiffarth, J.R., Dunnwald, M., Mankad, A., Weirather, J.L., Bonde, G., Butcher, S., Mansour, T.A., Kousa, Y.A., Fukazawa, C.F., Houston, D.W., Manak, J.R., Schutte, B.C., Wagner, D.S., and Cornell, R.A. (2013) Interferon Regulatory Factor 6 Promotes Differentiation of the Periderm by Activating Expression of Grainyhead-Like 3. The Journal of investigative dermatology. 133(1):68-77

Doganli, C., Beck, H.C., Ribera, A.B., Oxvig, C., and Lykke-Hartmann, K. (2013) α3Na+/K+-ATPase Deficiency Causes Brain Ventricle Dilation and Abrupt Embryonic Motility in Zebrafish. The Journal of biological chemistry. 288(13):8862-8874

Lam, P.Y., Harvie, E.A., and Huttenlocher, A. (2013) Heat shock modulates neutrophil motility in zebrafish. PLoS One. 8(12):e84436

Lee, M.T., Bonneau, A.R., Takacs, C.M., Bazzini, A.A., Divito, K.R., Fleming, E.S., and Giraldez, A.J. (2013) Nanog, Pou5f1 and SoxB1 activate zygotic gene expression during the maternal-to-zygotic transition. Nature. 503(7476):360-4

Li, Z., Zheng, W., Wang, Z., Zeng, Z., Zhan, H., Li, C., Zhou, L., Yan, C., Spitsbergen, J.M., and Gong, Z. (2013) A transgenic zebrafish liver tumor model with inducible Myc expression reveals conserved Myc signatures with mammalian liver tumors. Disease models & mechanisms. 427(1):223-226

Potok, M.E., Nix, D.A., Parnell, T.J., and Cairns, B.R. (2013) Reprogramming the maternal zebrafish genome after fertilization to match the paternal methylation pattern. Cell. 153(4):759-772

Shiau, C.E., Monk, K.R., Joo, W., and Talbot, W.S. (2013) An Anti-inflammatory NOD-like Receptor Is Required for Microglia Development. Cell Reports. 5(5):1342-1352

Wada, H., Ghysen, A., Asakawa, K., Abe, G., Ishitani, T., and Kawakami, K. (2013) Wnt/Dkk Negative Feedback Regulates Sensory Organ Size in Zebrafish. Current biology : CB. 23(16):1559-65

Cuello, S., Ximénez-Embún, P., Ruppen, I., Schonthaler, H.B., Ashman, K., Madrid, Y., Luque-Garcia, J.L., and Cámara, C. (2012) Analysis of protein expression in developmental toxicity induced by MeHg in zebrafish. The Analyst. 137(22):5302-5311

Gündel, U., Kalkhof, S., Zitzkat, D., von Bergen, M., Altenburger, R., and Küster, E. (2012) Concentration-response concept in ecotoxicoproteomics: Effects of different phenanthrene concentrations to the zebrafish (Danio rerio) embryo proteome. Ecotoxicology and environmental safety. 76(2):11-22

Li, Z., Huang, X., Zhan, H., Zeng, Z., Li, C., Spitsbergen, J.M., Meierjohann, S., Schartl, M., and Gong, Z. (2012) Inducible and repressable oncogene-addicted hepatocellular carcinoma in Tet-on xmrk transgenic zebrafish. Journal of hepatology. 56(2):419-425

Mohseny, A.B., Xiao, W., Carvalho, R., Spaink, H.P., Hogendoorn, P.C., and Cleton-Jansen, AM. (2012) An osteosarcoma zebrafish model implicates Mmp-19 and Ets-1 as well as reduced host immune response in angiogenesis and migration. The Journal of pathology. 227(2):245-253

O'Brien, G.S., Rieger, S., Wang, F., Smolen, G.A., Gonzalez, R.E., Buchanan, J., and Sagasti, A. (2012) Coordinate development of skin cells and cutaneous sensory axons in zebrafish. The Journal of comparative neurology. 520(4):816-31

Schepis, A., Sepich, D., and Nelson, W.J. (2012) αE-catenin regulates cell-cell adhesion and membrane blebbing during zebrafish epiboly. Development (Cambridge, England). 139(3):537-46

Ton, Q.V., and Iovine, M.K. (2012) Semaphorin3d mediates Cx43-dependent phenotypes during fin regeneration. Developmental Biology. 366(2):195-203

Yin, C., Evason, K.J., Maher, J.J., and Stainier, D.Y. (2012) The basic helix-loop-helix transcription factor, heart and neural crest derivatives expressed transcript 2, marks hepatic stellate cells in zebrafish: Analysis of stellate cell entry into the developing liver. Hepatology (Baltimore, Md.). 56(5):1958-1970

Chen, C.F., Chu, C.Y., Chen, T.H., Lee, S.J., Shen, C.N., and Hsiao, C.D. (2011) Establishment of a transgenic zebrafish line for superficial skin ablation and functional validation of apoptosis modulators in vivo. PLoS One. 6(5):e20654

Krens, S.F., Möllmert, S., and Heisenberg, C.P. (2011) Enveloping cell-layer differentiation at the surface of zebrafish germ-layer tissue explants. Proceedings of the National Academy of Sciences of the United States of America. 108(3):E9-E10

Paul, T.A., Rovnak, J., Quackenbush, S.L., Whitlock, K., Zhan, H., Gong, Z., Spitsbergen, J., Bowser, P.R., and Casey, J.W. (2011) Transgenic Expression of Walleye Dermal Sarcoma Virus rv-cyclin (orfA) in Zebrafish does not Result in Tissue Proliferation. Marine biotechnology (New York, N.Y.). 13(2):142-150

Schwend, T., Loucks, E.J., Snyder, D., and Ahlgren, S.C. (2011) Requirement of Npc1 and availability of cholesterol for early embryonic cell movements in Zebrafish. Journal of Lipid Research. 52(7):1328-44

Chatterjee, S., Min, L., Karuturi, R.K., and Lufkin, T. (2010) The role of post-transcriptional RNA processing and plasmid vector sequences on transient transgene expression in zebrafish. Transgenic Research. 19(2):299-304

Fukazawa, C., Santiago, C., Park, K.M., Deery, W.J., Canny, S.G., Holterhoff, C.K., and Wagner, D.S. (2010) poky/chuk/ikk1 is required for differentiation of the zebrafish embryonic epidermis. Developmental Biology. 346(2):272-283

Siddiqui, M., Sheikh, H., Tran, C., and Bruce, A.E. (2010) The tight junction component Claudin E is required for zebrafish epiboly. Developmental Dynamics : an official publication of the American Association of Anatomists. 239(2):715-722

Teh, C., Chudakov, D.M., Poon, K.L., Mamedov, I.Z., Sek, J.Y., Shidlovsky, K., Lukyanov, S., and Korzh, V. (2010) Optogenetic in vivo cell manipulation in KillerRed-expressing zebrafish transgenics. BMC Developmental Biology. 10:110

Brend, T., and Holley, S.A. (2009) Expression of the oscillating gene her1 is directly regulated by hairy/enhancer of split, T-box, and suppressor of hairless proteins in the zebrafish segmentation clock. Developmental Dynamics : an official publication of the American Association of Anatomists. 238(11):2745-2759

Gehrig, J., Reischl, M., Kalmar, E., Ferg, M., Hadzhiev, Y., Zaucker, A., Song, C., Schindler, S., Liebel, U., and Muller, F. (2009) Automated high-throughput mapping of promoter-enhancer interactions in zebrafish embryos. Nature Methods. 6(12):911-916

Ju, B., Spitsbergen, J., Eden, C.J., Taylor, M.R., and Chen, W. (2009) Co-activation of hedgehog and AKT pathways promote tumorigenesis in zebrafish. Molecular Cancer. 8:40

Kondrychyn, I., Garcia-Lecea, M., Emelyanov, A., Parinov, S., and Korzh, V. (2009) Genome-wide analysis of Tol2 transposon reintegration in zebrafish. BMC Genomics. 10:418

Sabel, J.L., d'Alençon, C., O'Brien, E.K., Otterloo, E.V., Lutz, K., Cuykendall, T.N., Schutte, B.C., Houston, D.W., and Cornell, R.A. (2009) Maternal Interferon Regulatory Factor 6 is required for the differentiation of primary superficial epithelia in Danio and Xenopus embryos. Developmental Biology. 325(1):249-262

Sims Jr, K., Eble, D.M., and Iovine, M.K. (2009) Connexin43 regulates joint location in zebrafish fins. Developmental Biology. 327(2):410-418

Heiden, T.C., Struble, C.A., Rise, M.L., Hessner, M.J., Hutz, R.J., and Carvan, M.J. 3rd. (2008) Molecular targets of 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) within the zebrafish ovary: Insights into TCDD-induced endocrine disruption and reproductive toxicity. Reproductive toxicology (Elmsford, N.Y.). 25(1):47-57

Liu, X., Li, Z., Emelyanov, A., Parinov, S., and Gong, Z. (2008) Generation of oocyte-specifically expressed cre transgenic zebrafish for female germline excision of loxp-flanked transgene. Developmental Dynamics : an official publication of the American Association of Anatomists. 237(10):2955-2962

Webb, A.E., Driever, W., and Kimelman, D. (2008) psoriasis regulates epidermal development in zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 237(4):1153-1164

Ferg, M., Sanges, R., Gehrig, J., Kiss, J., Bauer, M., Lovas, A., Szabo, M., Yang, L., Straehle, U., Pankratz, M.J., Olasz, F., Stupka, E., and Müller, F. (2007) The TATA-binding protein regulates maternal mRNA degradation and differential zygotic transcription in zebrafish. The EMBO journal. 26(17):3945-3956

Pei, W., Noushmehr, H., Costa, J., Ouspenskaia, M.V., Elkahloun, A.G., and Feldman, B. (2007) An early requirement for maternal FoxH1 during zebrafish gastrulation. Developmental Biology. 310(1):10-22

Tsujimura, T., Chinen, A., and Kawamura, S. (2007) Identification of a locus control region for quadruplicated green-sensitive opsin genes in zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 104(31):12813-12818

Emelyanov, A., Gao, Y., Naqvi, N.I., and Parinov, S. (2006) Trans-kingdom transposition of the maize Dissociation element. Genetics. 174(3):1095-1104

Havis, E., Anselme, I., and Schneider-Maunoury, S. (2006) Whole embryo chromatin immunoprecipitation protocol for the in vivo study of zebrafish development. Biotechniques. 40(1):34, 36, 38

Padhi, B.K., Akimenko, M.A., and Ekker, M. (2006) Independent expansion of the keratin gene family in teleostean fish and mammals: An insight from phylogenetic analysis and radiation hybrid mapping of keratin genes in zebrafish. Gene. 368:37-45

Balciunas, D., and Ekker, S.C. (2005) Trapping Fish Genes with Transposons. Zebrafish. 1(4):335-341

Leung, Y.F., and Dowling, J.E. (2005) Gene Expression Profiling of Zebrafish Embryonic Retina. Zebrafish. 2(4):269-283

Nowak, M., Köster, C., and Hammerschmidt, M. (2005) Perp is required for tissue-specific cell survival during zebrafish development. Cell death and differentiation. 12(1):52-64

Shimizu, T., Yabe, T., Muraoka, O., Yonemura, S., Aramaki, S., Hatta, K., Bae, Y.K., Nojima, H., and Hibi, M. (2005) E-cadherin is required for gastrulation cell movements in zebrafish. Mechanisms of Development. 122(6):747-763

Zeng, Z., Liu, X., Seebah, S., and Gong, Z. (2005) Faithful expression of living color reporter genes in transgenic medaka under two tissue-specific zebrafish promoters. Developmental Dynamics : an official publication of the American Association of Anatomists. 234(2):387-392

Linney, E., Dobbs-McAuliffe, B., Sajadi, H., and Malek, R.L. (2004) Microarray gene expression profiling during the segmentation phase of zebrafish development. Comparative biochemistry and physiology. Toxicology & pharmacology : CBP. 138(3):351-362

Parinov, S., Kondrichin, I., Korzh, V., and Emelyanov, A. (2004) Tol2 transposon-mediated enhancer trap to identify developmentally regulated zebrafish genes in vivo. Developmental Dynamics : an official publication of the American Association of Anatomists. 231(2):449-459

Schaffeld, M., Knappe, M., Hunzinger, C., and Markl, J. (2003) cDNA sequences of the authentic keratins 8 and 18 in zebrafish. Differentiation; research in biological diversity. 71(1):73-82

Gong, Z., Ju, B., Wang, X., He, J., Wan, H., Mudumana, S.P., and Yan, T. (2002) Green fluorescent protein expression in germ-line transmitted transgenic zebrafish under a stratified epithelial promoter from Keratin8. Developmental Dynamics : an official publication of the American Association of Anatomists. 223(2):204-215

Schaffeld, M., Haberkamp, M., Braziulis, E., Lieb, B. and Markl, J. (2002) Type II keratin cDNAs from the rainbow trout: implications for keratin evolution. Differentiation; research in biological diversity. 70(6):292-299

Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A. (2002) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 99(26):16899-903

Wan, H., He, J., Ju, B., Yan, T., Lam, T.J., and Gong, Z. (2002) Generation of Two-color Transgenic Zebrafish Using the Green and Red Fluorescent Protein Reporter Genes gfp and rfp. Marine biotechnology (New York, N.Y.). 4(2):146-54

Ju, B., Xu, Y., He, J., Liao, J., Yan, T., Hew, C.L., Lam, T.J., and Gong, Z.Y. (1999) Faithful expression of green fluorescent protein (GFP) in transgenic zebrafish embryos under control of zebrafish gene promoters. Developmental genetics. 25(2):158-167

Hug, B., Walter, V., and Grunwald, D.J. (1997) tbx6, a brachyury-related gene expressed by ventral mesendodermal precursors in the zebrafish embryo. Developmental Biology. 183(1):61-73

Imboden, M., Goblet, C., Korn, H., and Vriz, S. (1997) Cytokeratin 8 is a suitable epidermal marker during zebrafish development. Comptes rendus de l'Academie des sciences. Serie III, Sciences de la vie. 320:689-700

Additional Citations (23):

ZFIN Staff (2023) Automated Curation of UniProt Database Links. Automated Data Submission.

Zebrafish Nomenclature Committee (2021) Nomenclature Data Curation (2021). Nomenclature Committee Submission.

ZFIN Staff (2020) Addition of links from ZFIN to Expression Atlas. Semi-automated Curation.

ZFIN Staff (2017) Curation of PANTHER Gene IDs. Automated Data Submission.

ZFIN Staff (2017) Curation of Alliance of Genome Resources Database Links. Automated Data Submission.

UniProt curators (2015) Electronic Gene Ontology annotations created by transferring manual GO annotations between related proteins based on shared sequence features.. Automated Data Submission.

Zebrafish Nomenclature Committee (2014) Nomenclature Data Curation (2014). Nomenclature Committee Submission.

Busch-Nentwich, E., Kettleborough, R., Dooley, C. M., Scahill, C., Sealy, I., White, R., Herd, C., Mehroke, S., Wali, N., Carruthers, S., Hall, A., Collins, J., Gibbons, R., Pusztai, Z., Clark, R., and Stemple, D.L. (2013) Sanger Institute Zebrafish Mutation Project mutant data submission. ZFIN Direct Data Submission.

ZFIN Staff (2013) Semi-automated association of ENSDARG identifiers with ZFIN genes for the ZMP project. Semi-automated Curation.

Gaudet, P., Livstone, M., Thomas, P., The Reference Genome Project (2010) Annotation inferences using phylogenetic trees. Automated Data Submission.

ZFIN Staff (2007) Microarray Expression to Gene Association in ZFIN. Semi-automated Curation.

Zebrafish Nomenclature Committee (2006) Mutant / transgenic name reservations. Nomenclature Committee Submission.

ZFIN Staff (2006) Curation of Ensembl Database Links. Automated Data Submission.

ZFIN Staff (2004) ZGC Data Curation and Association in ZFIN by ZFIN Staff. Semi-automated Curation.

Rauch, G.J., Lyons, D.A., Middendorf, I., Friedlander, B., Arana, N., Reyes, T., and Talbot, W.S. (2003) Submission and Curation of Gene Expression Data. ZFIN Direct Data Submission.

ZFIN Staff (2003) Curation of VEGA Database Links. Automated Data Submission.

ZFIN Staff (2003) Curation of FPC Database Links. Automated Data Submission.

ZFIN Staff (2003) Computational Sequence to Gene Association in ZFIN. Semi-automated Curation.

ZFIN Staff (2002) Gene Ontology Annotation Through Association of UniProt Keywords with GO Terms. Automated Data Submission.

ZFIN Staff (2002) Curation of NCBI Gene Data Via Shared RNA Sequence IDs. Automated Data Submission.

ZFIN Staff (2002) Scientific Curation. Manually curated data.

ZFIN Staff (2002) Gene Ontology Annotation Through Association of InterPro Records with GO Terms. Automated Data Submission.

Thisse, B., Pflumio, S., Fürthauer, M., Loppin, B., Heyer, V., Degrave, A., Woehl, R., Lux, A., Steffan, T., Charbonnier, X.Q. and Thisse, C. (2001) Expression of the zebrafish genome during embryogenesis (NIH R01 RR15402). ZFIN Direct Data Submission.