ZFIN

ZFIN ID: ZDB-EREGION-121024-1

ZFIN ID: ZDB-EREGION-121024-1

CITATIONS (40 total)

Engineered Region Name:	GAP
Engineered Region Symbol:	GAP

Denans, N., Tran, N.T.T., Swall, M.E., Diaz, D.C., Blanck, J., Piotrowski, T. (2022) An anti-inflammatory activation sequence governs macrophage transcriptional dynamics during tissue injury in zebrafish. Nature communications. 13:5356

Sharrock, A.V., Mulligan, T.S., Hall, K.R., Williams, E.M., White, D.T., Zhang, L., Emmerich, K., Matthews, F., Nimmagadda, S., Washington, S., Le, K.D., Meir-Levi, D., Cox, O.L., Saxena, M.T., Calof, A.L., Lopez-Burks, M.E., Lander, A.D., Ding, D., Ji, H., Ackerley, D.F., Mumm, J.S. (2022) NTR 2.0: a rationally engineered prodrug-converting enzyme with substantially enhanced efficacy for targeted cell ablation. Nature Methods. 19:205-215

Elsaey, M.A., Namikawa, K., Köster, R.W. (2021) Genetic Modeling of the Neurodegenerative Disease Spinocerebellar Ataxia Type 1 in Zebrafish. International Journal of Molecular Sciences. 22(14):

Fontenas, L., Kucenas, S. (2021) Spinal cord precursors utilize neural crest cell mechanisms to generate hybrid peripheral myelinating glia. eLIFE. 10:

Kim, D., Lee, Y.R., Choi, T.I., Kim, S.H., Kang, H.C., Kim, C.H., Lee, S. (2021) Comparative Proteome Research in a Zebrafish Model for Vanishing White Matter Disease. International Journal of Molecular Sciences. 22(5):

Zhang, L., Chen, C., Fu, J., Lilley, B., Berlinicke, C., Hansen, B., Ding, D., Wang, G., Wang, T., Shou, D., Ye, Y., Mulligan, T., Emmerich, K., Saxena, M.T., Hall, K.R., Sharrock, A.V., Brandon, C., Park, H., Kam, T.I., Dawson, V.L., Dawson, T.M., Shim, J.S., Hanes, J., Ji, H., Liu, J.O., Qian, J., Ackerley, D.F., Rohrer, B., Zack, D.J., Mumm, J.S. (2021) Large-scale phenotypic drug screen identifies neuroprotectants in zebrafish and mouse models of retinitis pigmentosa. eLIFE. 10:

Bremer, J., Marsden, K.C., Miller, A., Granato, M. (2019) The ubiquitin ligase PHR promotes directional regrowth of spinal zebrafish axons. Communications biology. 2:195

Koide, T., Yabuki, Y., Yoshihara, Y. (2018) Terminal Nerve GnRH3 Neurons Mediate Slow Avoidance of Carbon Dioxide in Larval Zebrafish. Cell Reports. 22:1115-1123

Pantoja, C., Hoagland, A., Carroll, E.C., Karalis, V., Conner, A., Isacoff, E.Y. (2016) Neuromodulatory Regulation of Behavioral Individuality in Zebrafish. Neuron. 91(3):587-601

Takeuchi, M., Matsuda, K., Yamaguchi, S., Asakawa, K., Miyasaka, N., Lal, P., Yoshihara, Y., Koga, A., Kawakami, K., Shimizu, T., Hibi, M. (2015) Establishment of Gal4 transgenic zebrafish lines for analysis of development of cerebellar neural circuitry. Developmental Biology. 397(1):1-17

Mathias, J.R., Zhang, Z., Saxena, M.T., and Mumm, J.S. (2014) Enhanced Cell-Specific Ablation in Zebrafish Using a Triple Mutant of Escherichia Coli Nitroreductase. Zebrafish. 11(2):85-97

Torres-Paz, J., Whitlock, K.E. (2014) Olfactory sensory system develops from coordinated movements within the neural plate. Developmental Dynamics : an official publication of the American Association of Anatomists. 243:1619-31

Dell, A.L., Fried-Cassorla, E., Xu, H., and Raper, J.A. (2013) cAMP-Induced Expression of Neuropilin1 Promotes Retinal Axon Crossing in the Zebrafish Optic Chiasm. The Journal of neuroscience : the official journal of the Society for Neuroscience. 33(27):11076-11088

Jusuf, P.R., Albadri, S., Paolini, A., Currie, P.D., Argenton, F., Higashijima, S., Harris, W.A., and Poggi, L. (2012) Biasing Amacrine Subtypes in the Atoh7 Lineage through Expression of Barhl2. The Journal of neuroscience : the official journal of the Society for Neuroscience. 32(40):13929-13944

Lakhina, V., Marcaccio, C.L., Shao, X., Lush, M.E., Jain, R.A., Fujimoto, E., Bonkowsky, J.L., Granato, M., and Raper, J.A. (2012) Netrin/DCC Signaling Guides Olfactory Sensory Axons to Their Correct Location in the Olfactory Bulb. The Journal of neuroscience : the official journal of the Society for Neuroscience. 32(13):4440-4456

Odermatt, B., Nikolaev, A., and Lagnado, L. (2012) Encoding of luminance and contrast by linear and nonlinear synapses in the retina. Neuron. 73(4):758-773

Walker, S.L., Ariga, J., Mathias, J.R., Coothankandaswamy, V., Xie, X., Distel, M., Köster, R.W., Parsons, M.J., Bhalla, K.N., Saxena, M.T., and Mumm, J.S. (2012) Automated reporter quantification in vivo: high-throughput screening method for reporter-based assays in zebrafish. PLoS One. 7(1):e29916

Xie, X., Mathias, J.R., Smith, M.A., Walker, S.L., Teng, Y., Distel, M., Koster, R.W., Sirotkin, H.I., Saxena, M.T., and Mumm, J.S. (2012) Silencer-delimited transgenesis: NRSE/RE1 sequences promote neural-specific transgene expression in a NRSF/REST-dependent manner. BMC Biology. 10:93

Choi, J.H., Law, M.Y., Chien, C.B., Link, B.A., and Wong, R.O. (2010) In vivo development of dendritic orientation in wild-type and mislocalized retinal ganglion cells. Neural Development. 5:29

Collins, R.T., Linker, C., and Lewis, J. (2010) MAZe: a tool for mosaic analysis of gene function in zebrafish. Nature Methods. 7(3):219-223

Lewis, A., Williams, P., Lawrence, O., Wong, R.O., and Brockerhoff, S.E. (2010) Wild-type cone photoreceptors persist despite neighboring mutant cone degeneration. The Journal of neuroscience : the official journal of the Society for Neuroscience. 30(1):382-389

Tanabe, K., Kani, S., Shimizu, T., Bae, Y.K., Abe, T., and Hibi, M. (2010) Atypical protein kinase C regulates primary dendrite specification of cerebellar Purkinje cells by localizing Golgi apparatus. The Journal of neuroscience : the official journal of the Society for Neuroscience. 30(50):16983-16992

Teh, C., Chudakov, D.M., Poon, K.L., Mamedov, I.Z., Sek, J.Y., Shidlovsky, K., Lukyanov, S., and Korzh, V. (2010) Optogenetic in vivo cell manipulation in KillerRed-expressing zebrafish transgenics. BMC Developmental Biology. 10:110

Williams, P.R., Suzuki, S.C., Yoshimatsu, T., Lawrence, O.T., Waldron, S.J., Parsons, M.J., Nonet, M.L., and Wong, R.O. (2010) In vivo development of outer retinal synapses in the absence of glial contact. The Journal of neuroscience : the official journal of the Society for Neuroscience. 30(36):11951-11961

Miyasaka, N., Morimoto, K., Tsubokawa, T., Higashijima, S., Okamoto, H., and Yoshihara, Y. (2009) From the olfactory bulb to higher brain centers: genetic visualization of secondary olfactory pathways in zebrafish. The Journal of neuroscience : the official journal of the Society for Neuroscience. 29(15):4756-4767

Sato, Y., Miyasaka, N., and Yoshihara, Y. (2007) Hierarchical regulation of odorant receptor gene choice and subsequent axonal projection of olfactory sensory neurons in zebrafish. The Journal of neuroscience : the official journal of the Society for Neuroscience. 27(7):1606-1615

Scott, E.K., Mason, L., Arrenberg, A.B., Ziv, L., Gosse, N.J., Xiao, T., Chi, N.C., Asakawa, K., Kawakami, K., and Baier, H. (2007) Targeting neural circuitry in zebrafish using GAL4 enhancer trapping. Nature Methods. 4(4):323-326

Schroeter, E.H., Wong, R.O., and Gregg, R.G. (2006) In vivo development of retinal ON-bipolar cell axonal terminals visualized in nyx::MYFP transgenic zebrafish. Visual neuroscience. 23(5):833-843

Zolessi, F.R., Poggi, L., Wilkinson, C.J., Chien, C.B., and Harris, W.A. (2006) Polarization and orientation of retinal ganglion cells in vivo. Neural Development. 1:2

Godinho, L., Mumm, J.S., Williams, P.R., Schroeter, E.H., Koerber, A., Park, S.W., Leach, S.D., and Wong, R.O. (2005) Targeting of amacrine cell neurites to appropriate synaptic laminae in the developing zebrafish retina. Development (Cambridge, England). 132(22):5069-5079

Miyasaka, N., Sato, Y., Yeo, S.Y., Hutson, L.D., Chien, C.B., Okamoto, H., and Yoshihara, Y. (2005) Robo2 is required for establishment of a precise glomerular map in the zebrafish olfactory system. Development (Cambridge, England). 132(6):1283-1293

Morris, A.C., Schroeter, E.H., Bilotta, J., Wong, R.O., and Fadool, J.M. (2005) Cone Survival Despite Rod Degeneration in XOPS-mCFP Transgenic Zebrafish. Investigative ophthalmology & visual science. 46(12):4762-4771

Sato, Y., Miyasaka, N., and Yoshihara, Y. (2005) Mutually exclusive glomerular innervation by two distinct types of olfactory sensory neurons revealed in transgenic zebrafish. The Journal of neuroscience : the official journal of the Society for Neuroscience. 25(20):4889-4897

Xiao, T., Roeser, T., Staub, W., and Baier, H. (2005) A GFP-based genetic screen reveals mutations that disrupt the architecture of the zebrafish retinotectal projection. Development (Cambridge, England). 132(13):2955-2967

Kay, J.N., Roeser, T., Mumm, J.S., Godinho, L., Mrejeru, A., Wong, R.O., and Baier, H. (2004) Transient requirement for ganglion cells during assembly of retinal synaptic layers. Development (Cambridge, England). 131(6):1331-1342

Concha, M.L., Russell, C., Regan, J.C., Tawk, M., Sidi, S., Gilmour, D.T., Kapsimali, M., Sumoy, L., Goldstone, K., Amaya, E., Kimelman, D., Nicolson, T., Gründer, S., Gomperts, M., Clarke, J.D.W., and Wilson, S.W. (2003) Local tissue interactions across the dorsal midline of the forebrain establish CNS laterality. Neuron. 39(3):423-438

Additional Citations (4):

Zebrafish Nomenclature Committee (2014) Nomenclature Data Curation (2014). Nomenclature Committee Submission.

Zebrafish Nomenclature Committee (2013) Nomenclature Requests: Mutant and Transgenic Name Reservations (2013). Nomenclature Committee Submission.

Zebrafish Nomenclature Committee (2011) Nomenclature Data Curation (active). Nomenclature Committee Submission.

ZFIN Staff (2003) Submission and Curation of Mutant and Transgenic Lines. ZFIN Direct Data Submission.