Abdelfattah, A.S., Kawashima, T., Singh, A., Novak, O., Liu, H., Shuai, Y., Huang, Y.C., Campagnola, L., Seeman, S.C., Yu, J., Zheng, J., Grimm, J.B., Patel, R., Friedrich, J., Mensh, B.D., Paninski, L., Macklin, J.J., Murphy, G.J., Podgorski, K., Lin, B.J., Chen, T.W., Turner, G.C., Liu, Z., Koyama, M., Svoboda, K., Ahrens, M.B., Lavis, L.D., Schreiter, E.R. (2019) Bright and photostable chemigenetic indicators for extended in vivo voltage imaging. Science (New York, N.Y.). 365(6454):699-704

Akitake, C.M., Macurak, M., Halpern, M.E., and Goll, M.G. (2011) Transgenerational analysis of transcriptional silencing in zebrafish. Developmental Biology. 352(2):191-201

Alghisi, E., Distel, M., Malagola, M., Anelli, V., Santoriello, C., Herwig, L., Krudewig, A., Henkel, C.V., Russo, D., and Mione, M.C. (2013) Targeting oncogene expression to endothelial cells induces proliferation of the myelo-erythroid lineage by repressing the notch pathway. Leukemia. 24(6):943-53

Ali, Z., Mukwaya, A., Biesemeier, A., Ntzouni, M., Ramsköld, D., Giatrellis, S., Mammadzada, P., Cao, R., Lennikov, A., Marass, M., Gerri, C., Hildesjö, C., Taylor, M., Deng, Q., Peebo, B., Del Peso, L., Kvanta, A., Sandberg, R., Schraermeyer, U., Andre, H., Steffensen, J.F., Lagali, N., Cao, Y., Kele, J., Jensen, L.D. (2019) Intussusceptive Vascular Remodeling Precedes Pathological Neovascularization. Arteriosclerosis, Thrombosis, and Vascular Biology. 39:1402-1418

Andersen, S.S.L. (2019) Real time large scale in vivo observations reveal intrinsic synchrony, plasticity and growth cone dynamics of midline crossing axons at the ventral floor plate of the zebrafish spinal cord. Journal of Integrative Neuroscience. 18:351-368

Ando, K., Tong, L., Peng, D., Vázquez-Liébanas, E., Chiyoda, H., He, L., Liu, J., Kawakami, K., Mochizuki, N., Fukuhara, S., Grutzendler, J., Betsholtz, C. (2022) KCNJ8/ABCC9-containing K-ATP channel modulates brain vascular smooth muscle development and neurovascular coupling. Developmental Cell. 57(11):1383-1399.e7

Andrés-Delgado, L., Galardi-Castilla, M., Münch, J., Peralta, M., Ernst, A., González-Rosa, J.M., Tessadori, F., Santamaría, L., Bakkers, J., Vermot, J., de la Pompa, J.L., Mercader, N. (2020) Notch and Bmp signaling pathways act coordinately during the formation of the proepicardium. Developmental Dynamics : an official publication of the American Association of Anatomists. 249(12):1455-1469

Apschner, A., Huitema, L.F., Ponsioen, B., Peterson-Maduro, J., Schulte-Merker, S. (2014) Pathological mineralization in a zebrafish enpp1 mutant exhibits features of Generalized Arterial Calcification of Infancy (GACI) and Pseudoxanthoma Elasticum (PXE). Disease models & mechanisms. 7(7):811-22

Asakawa, K., and Kawakami, K. (2010) A transgenic zebrafish for monitoring in vivo microtubule structures. Developmental Dynamics : an official publication of the American Association of Anatomists. 239(10):2695-2699

Asakawa, K., Handa, H., Kawakami, K. (2020) Optogenetic modulation of TDP-43 oligomerization accelerates ALS-related pathologies in the spinal motor neurons. Nature communications. 11:1004

Asakawa, K., Kawakami, K. (2018) Protocadherin-Mediated Cell Repulsion Controls the Central Topography and Efferent Projections of the Abducens Nucleus. Cell Reports. 24:1562-1572

Atkins, M., Gasmi, L., Bercier, V., Revenu, C., Del Bene, F., Hazan, J., Fassier, C. (2019) FIGNL1 associates with KIF1Bβ and BICD1 to restrict dynein transport velocity during axon navigation. The Journal of cell biology. 218(10):3290-3306

Aydogan, V., Lenard, A., Denes, A.S., Sauteur, L., Belting, H.G., Affolter, M. (2015) Endothelial cell division in angiogenic sprouts of differing cellular architecture. Biology Open. 4(10):1259-69

Bahrami, N., Childs, S.J. (2020) Development of vascular regulation in the zebrafish embryo. Development (Cambridge, England). 147(10):

Barker, A.J., Helmbrecht, T.O., Grob, A.A., Baier, H. (2020) Functional, molecular and morphological heterogeneity of superficial interneurons in the larval zebrafish tectum. The Journal of comparative neurology. 529(9):2159-2175

Basnakova, A., Cheng, R.K., Chia, J.S.M., D'Agostino, G., Suryadi, ., Tan, G.J.H., Langley, S.R., Jesuthasan, S. (2021) The habenula clock influences response to a stressor. Neurobiology of stress. 15:100403

Bell, L.M., Holm, A., Matysiak, U., Driever, W., Rößler, J., Schanze, D., Wieland, I., Niemeyer, C.M., Zenker, M., Kapp, F.G. (2021) Functional assessment of two variants of unknown significance in TEK by endothelium-specific expression in zebrafish embryos. Human molecular genetics. 31(1):10-17

Bergboer, J.G.M., Wyatt, C., Austin-Tse, C., Yaksi, E., Drummond, I.A. (2018) Assaying sensory ciliopathies using calcium biosensor expression in zebrafish ciliated olfactory neurons. Cilia. 7:2

Bhandiwad, A.A., Chu, N.C., Semenova, S.A., Holmes, G.A., Burgess, H.A. (2022) A cerebellar-prepontine circuit for tonic immobility triggered by an inescapable threat. Science advances. 8:eabo0549

Bloch, S., Hagio, H., Thomas, M., Heuzé, A., Hermel, J.M., Lasserre, E., Colin, I., Saka, K., Affaticati, P., Jenett, A., Kawakami, K., Yamamoto, N., Yamamoto, K. (2020) Non-thalamic origin of zebrafish sensory nuclei implies convergent evolution of visual pathways in amniotes and teleosts. eLIFE. 9:

Boselli, F., Steed, E., Freund, J.B., Vermot, J. (2017) Anisotropic shear stress patterns predict the orientation of convergent tissue movements in the embryonic heart. Development (Cambridge, England). 144:4322-4327

Braubach, O.R., Miyasaka, N., Koide, T., Yoshihara, Y., Croll, R.P., and Fine, A. (2013) Experience-Dependent versus Experience-Independent Postembryonic Development of Distinct Groups of Zebrafish Olfactory Glomeruli. The Journal of neuroscience : the official journal of the Society for Neuroscience. 33(16):6905-6916

Bremer, J., Marsden, K.C., Miller, A., Granato, M. (2019) The ubiquitin ligase PHR promotes directional regrowth of spinal zebrafish axons. Communications biology. 2:195

Brown, A.R., Green, J.M., Moreman, J., Gunnarsson, L., Mourabit, S., Ball, J., Winter, M., Trznadel, M., Correia, A., Hacker, C., Perry, A., Wood, M., Hetheridge, M., Currie, R., Tyler, C.R. (2018) Cardiovascular effects and molecular mechanisms of bisphenol A and its metabolite MBP in zebrafish. Environmental science & technology. 53(1):463-474

Bruckner, J.J., Stednitz, S.J., Grice, M.Z., Zaidan, D., Massaquoi, M.S., Larsch, J., Tallafuss, A., Guillemin, K., Washbourne, P., Eisen, J.S. (2022) The microbiota promotes social behavior by modulating microglial remodeling of forebrain neurons. PLoS Biology. 20:e3001838

Bussmann, J., and Schulte-Merker, S. (2011) Rapid BAC selection for tol2-mediated transgenesis in zebrafish. Development (Cambridge, England). 138(19):4327-32

Bátora, D., Zsigmond, Á., Lőrincz, I.Z., Szegvári, G., Varga, M., Málnási-Csizmadia, A. (2021) Subcellular Dissection of a Simple Neural Circuit: Functional Domains of the Mauthner-Cell During Habituation. Frontiers in neural circuits. 15:648487

Cairelli, A.G., Chow, R.W., Vermot, J., Yap, C.H. (2022) Fluid mechanics of the zebrafish embryonic heart trabeculation. PLoS Computational Biology. 18:e1010142

Carretero-Ortega, J., Chhangawala, Z., Hunt, S., Narvaez, C., Menéndez-González, J., Gay, C.M., Zygmunt, T., Li, X., Torres-Vázquez, J. (2019) GIPC proteins negatively modulate Plexind1 signaling during vascular development. eLIFE. 8:

Chen, J., He, J., Luo, L. (2022) The brain vascular damage-induced lymphatic ingrowth is directed by Cxcl12b/Cxcr4a. Development (Cambridge, England). 149(13)

Chen, X., Gays, D., Milia, C., Santoro, M.M. (2017) Cilia Control Vascular Mural Cell Recruitment in Vertebrates. Cell Reports. 18:1033-1047

Cheng, R.K., Krishnan, S., Lin, Q., Kibat, C., Jesuthasan, S. (2017) Characterization of a thalamic nucleus mediating habenula responses to changes in ambient illumination. BMC Biology. 15:104

Chiang, I.K., Fritzsche, M., Pichol-Thievend, C., Neal, A., Holmes, K., Lagendijk, A., Overman, J., D'Angelo, D., Omini, A., Hermkens, D., Lesieur, E., Liu, K., Ratnayaka, I., Corada, M., Bou-Gharios, G., Carroll, J., Dejana, E., Schulte-Merker, S., Hogan, B., Beltrame, M., De Val, S., Francois, M. (2017) SoxF factors induce Notch1 expression via direct transcriptional regulation during early arterial development. Development (Cambridge, England). 144(14):2629-2639

Chow, R.W., Fukui, H., Chan, W.X., Tan, K.S.J., Roth, S., Duchemin, A.L., Messaddeq, N., Nakajima, H., Liu, F., Faggianelli-Conrozier, N., Klymchenko, A.S., Choon Hwai, Y., Mochizuki, N., Vermot, J. (2022) Cardiac forces regulate zebrafish heart valve delamination by modulating Nfat signaling. PLoS Biology. 20:e3001505

Cooper, R., David, A., Kudoh, T., Tyler, C.R. (2021) Seasonal variation in oestrogenic potency and biological effects of wastewater treatment works effluents assessed using ERE-GFP transgenic zebrafish embryo-larvae. Aquatic toxicology (Amsterdam, Netherlands). 237:105864

Coxam, B., Collins, R.T., Hußmann, M., Huisman, Y., Meier, K., Jung, S., Bartels-Klein, E., Szymborska, A., Finotto, L., Helker, C.S.M., Stainier, D.Y.R., Schulte-Merker, S., Gerhardt, H. (2022) Svep1 stabilizes developmental vascular anastomosis in reduced flow conditions. Development (Cambridge, England). 149(6):

Das, R.N., Tevet, Y., Safriel, S., Han, Y., Moshe, N., Lambiase, G., Bassi, I., Nicenboim, J., Brückner, M., Hirsch, D., Eilam-Altstadter, R., Herzog, W., Avraham, R., Poss, K.D., Yaniv, K. (2022) Generation of specialized blood vessels via lymphatic transdifferentiation. Nature. 606(7914):570-575

Demal, T.J., Heise, M., Reiz, B., Dogra, D., Brænne, I., Reichenspurner, H., Männer, J., Aherrahrou, Z., Schunkert, H., Erdmann, J., Abdelilah-Seyfried, S. (2019) A familial congenital heart disease with a possible multigenic origin involving a mutation in BMPR1A. Scientific Reports. 9:2959

Demy, D.L., Carrère, M., Noche, R., Tauzin, M., Le Bris, M., Baek, C., Leshchiner, I., Goessling, W., Herbomel, P. (2020) The cationic amino acid exporter Slc7a7 is induced and vital in tissue macrophages with sustained efferocytic activity. Journal of Cell Science. 133(20):

Demy, D.L., Touret, A.L., Lancino, M., Tauzin, M., Capuana, L., Pierre, C., Herbomel, P. (2022) Trim33 conditions the lifespan of primitive macrophages and onset of definitive macrophage production. Development (Cambridge, England). 149(18):

Dhakal, S., Rotem-Bamberger, S., Sejd, J.R., Sebbagh, M., Ronin, N., Frey, R.A., Beitsch, M., Batty, M., Taler, K., Blackerby, J.F., Inbal, A., Stenkamp, D.L. (2021) Selective Requirements for Vascular Endothelial Cells and Circulating Factors in the Regulation of Retinal Neurogenesis. Frontiers in cell and developmental biology. 9:628737

Donat, S., Lourenço, M., Paolini, A., Otten, C., Renz, M., Abdelilah-Seyfried, S. (2018) Heg1 and Ccm1/2 proteins control endocardial mechanosensitivity during zebrafish valvulogenesis. eLIFE. 7:e28939

Dow, E., Jacobo, A., Hossain, S., Siletti, K., Hudspeth, A.J. (2018) Connectomics of the zebrafish's lateral-line neuromast reveals wiring and miswiring in a simple microcircuit. eLIFE. 7

Duboué, E.R., Hong, E., Eldred, K.C., Halpern, M.E. (2017) Left Habenular Activity Attenuates Fear Responses in Larval Zebrafish. Current biology : CB. 27(14):2154-2162.e3

Echeverry, F.A., Ijaz, S., Pereda, A.E. (2022) "Recording synaptic transmission from auditory mixed synapses on the Mauthner cells of developing zebrafish". eNeuro. 9(3):

Ellett, F., Pazhakh, V., Pase, L., Benard, E.L., Weerasinghe, H., Azabdaftari, D., Alasmari, S., Andrianopoulos, A., Lieschke, G.J. (2018) Macrophages protect Talaromyces marneffei conidia from myeloperoxidase-dependent neutrophil fungicidal activity during infection establishment in vivo. PLoS pathogens. 14:e1007063

Enya, S., Kawakami, K., Suzuki, Y., Kawaoka, S. (2018) A novel zebrafish intestinal tumor model reveals a role for cyp7a1-dependent tumor-liver crosstalk in causing adverse effects on the host.. Disease models & mechanisms. 11(8)

Esaki, M., Hoshijima, K., Nakamura, N., Munakata, K., Tanaka, M., Ookata, K., Asakawa, K., Kawakami, K., Wang, W., Weinberg, E.S., and Hirose, S. (2009) Mechanism of development of ionocytes rich in vacuolar-type H(+)-ATPase in the skin of zebrafish larvae. Developmental Biology. 329(1):116-129

Espín-Palazón, R., Stachura, D.L., Campbell, C.A., García-Moreno, D., Del Cid, N., Kim, A.D., Candel, S., Meseguer, J., Mulero, V., Traver, D. (2014) Proinflammatory signaling regulates hematopoietic stem cell emergence. Cell. 159:1070-85

Faucherre, A., and López-Schier, H. (2011) Delaying gal4-driven gene expression in the zebrafish with morpholinos and gal80. PLoS One. 6(1):e16587

Fero, K., Bergeron, S.A., Horstick, E.J., Codore, H., Li, G.H., Ono, F., Dowling, J.J., and Burgess, H.A. (2014) Impaired embryonic motility in dusp27 mutants reveals a developmental defect in myofibril structure. Disease models & mechanisms. 7(2):289-98

Fontana, F., Haack, T., Reichenbach, M., Knaus, P., Puceat, M., Abdelilah-Seyfried, S. (2020) Antagonistic Activities of Vegfr3/Flt4 and Notch1b Fine-tune Mechanosensitive Signaling during Zebrafish Cardiac Valvulogenesis. Cell Reports. 32:107883

Frøyset, A.K., Edson, A.J., Gharbi, N., Khan, E.A., Dondorp, D., Bai, Q., Tiraboschi, E., Suster, M.L., Connolly, J.B., Burton, E.A., Fladmark, K.E. (2018) Astroglial DJ-1 over-expression up-regulates proteins involved in redox regulation and is neuroprotective in vivo. Redox Biology. 16:237-247

Fukuda, R., Gunawan, F., Beisaw, A., Jimenez-Amilburu, V., Maischein, H.M., Kostin, S., Kawakami, K., Stainier, D.Y. (2017) Proteolysis regulates cardiomyocyte maturation and tissue integration. Nature communications. 8:14495

Fukui, H., Shiba, D., Asakawa, K., Kawakami, K., and Yokoyama, T. (2012) The ciliary protein Nek8/Nphp9 acts downstream of Inv/Nphp2 during pronephros morphogenesis and left-right establishment in zebrafish. FEBS letters. 586(16):2273-2279

Gawdzik, J.C., Yue, M.S., Martin, N.R., Elemans, L.M.H., Lanham, K.A., Heideman, W., Rezendes, R., Baker, T.R., Taylor, M.R., Plavicki, J.S. (2018) sox9b is required in cardiomyocytes for cardiac morphogenesis and function. Scientific Reports. 8:13906

Gerri, C., Marass, M., Rossi, A., Stainier, D.Y.R. (2018) Hif-1α and Hif-2α regulate hemogenic endothelium and hematopoietic stem cell formation in zebrafish. Blood. 131(9):963-973

Goetz, J.G., Steed, E., Ferreira, R.R., Roth, S., Ramspacher, C., Boselli, F., Charvin, G., Liebling, M., Wyart, C., Schwab, Y., Vermot, J. (2014) Endothelial cilia mediate low flow sensing during zebrafish vascular development. Cell Reports. 6:799-808

Goode, C., Voeun, M., Ncube, D., Eisen, J., Washbourne, P., Tallafuss, A. (2020) Late onset of Synaptotagmin 2a expression at synapses relevant to social behavior. The Journal of comparative neurology. 529(9):2176-2188

Grainger, S., Richter, J., Palazón, R.E., Pouget, C., Lonquich, B., Wirth, S., Grassme, K.S., Herzog, W., Swift, M.R., Weinstein, B.M., Traver, D., Willert, K. (2016) Wnt9a Is Required for the Aortic Amplification of Nascent Hematopoietic Stem Cells. Cell Reports. 17:1595-1606

Green, J.M., Metz, J., Lee, O., Trznadel, M., Takesono, A., Brown, A.R., Owen, S.F., Kudoh, T., Tyler, C.R. (2016) High-Content and Semi-Automated Quantification of Responses to Estrogenic Chemicals Using a Novel Translucent Transgenic Zebrafish. Environmental science & technology. 50(12):6536-45

Guerra, A., Germano, R.F., Stone, O., Arnaout, R., Guenther, S., Ahuja, S., Uribe, V., Vanhollebeke, B., Stainier, D.Y., Reischauer, S. (2018) Distinct myocardial lineages break atrial symmetry during cardiogenesis in zebrafish. eLIFE. 7

Gunawan, F., Gentile, A., Fukuda, R., Tsedeke, A.T., Jiménez-Amilburu, V., Ramadass, R., Iida, A., Sehara-Fujisawa, A., Stainier, D.Y.R. (2019) Focal adhesions are essential to drive zebrafish heart valve morphogenesis. The Journal of cell biology. 218(3):1039-1054

Guo, C., Webb, S.E., Chan, C.M., Miller, A.L. (2020) TPC2-mediated Ca²⁺ signaling is required for axon extension in caudal primary motor neurons in zebrafish embryos. Journal of Cell Science. 133(13):

Gurevich, D.B., Severn, C.E., Twomey, C., Greenhough, A., Cash, J., Toye, A.M., Mellor, H., Martin, P. (2018) Live imaging of wound angiogenesis reveals macrophage orchestrated vessel sprouting and regression. The EMBO journal. 37(13)

Haesemeyer, M., Robson, D.N., Li, J.M., Schier, A.F., Engert, F. (2018) A Brain-wide Circuit Model of Heat-Evoked Swimming Behavior in Larval Zebrafish. Neuron. 98(4):817-831.e6

Hall, C.J., Sanderson, L.E., Lawrence, L.M., Pool, B., van der Kroef, M., Ashimbayeva, E., Britto, D., Harper, J.L., Lieschke, G.J., Astin, J.W., Crosier, K.E., Dalbeth, N., Crosier, P.S. (2018) Blocking fatty acid-fueled mROS production within macrophages alleviates acute gouty inflammation. The Journal of Clinical Investigation. 128(5):1752-1771

Harmon, T.C., McLean, D.L., Raman, I.M. (2020) Integration of swimming-related synaptic excitation and inhibition by olig2⁺ eurydendroid neurons in larval zebrafish cerebellum. The Journal of neuroscience : the official journal of the Society for Neuroscience. 40(15):3063-3074

Heckel, E., Boselli, F., Roth, S., Krudewig, A., Belting, H. G., Charvin, G., Vermot, J. (2015) Oscillatory Flow Modulates Mechanosensitive klf2a Expression through trpv4 and trpp2 during Heart Valve Development. Current biology : CB. 25(10):1354-1361

Heller, I.S., Guenther, C.A., Meireles, A.M., Talbot, W.S., Kingsley, D.M. (2021) Characterization of mouse Bmp5 regulatory injury element in zebrafish wound models. Bone. 155:116263

Herbst, S., Shah, A., Mazon Moya, M., Marzola, V., Jensen, B., Reed, A., Birrell, M.A., Saijo, S., Mostowy, S., Shaunak, S., Armstrong-James, D. (2015) Phagocytosis-dependent activation of a TLR9-BTK-calcineurin-NFAT pathway co-ordinates innate immunity to Aspergillus fumigatus. EMBO Molecular Medicine. 7(3):240-58

Herwig, L., Blum, Y., Krudewig, A., Ellertsdottir, E., Lenard, A., and Belting, H.G., and Affolter, M. (2011) Distinct Cellular Mechanisms of Blood Vessel Fusion in the Zebrafish Embryo. Current biology : CB. 21(22):1942-1948

Hirata, H., Wen, H., Kawakami, Y., Naganawa, Y., Ogino, K., Yamada, K., Saint-Amant, L., Low, S.E., Cui, W.W., Zhou, W., Sprague, S.M., Asakawa, K., Muto, A., Kawakami, K., and Kuwada, J.Y. (2012) Connexin39.9 is necessary for coordinated activation of slow-twitch muscle and normal behavior in zebrafish. The Journal of biological chemistry. 287(2):1080-9

Ho, J.C., Hsiao, C.D., Kawakami, K., Tse, W.K. (2016) Triclosan (TCS) exposure impairs lipid metabolism in zebrafish embryos. Aquatic toxicology (Amsterdam, Netherlands). 173:29-35

Hoijman, E., Häkkinen, H.M., Tolosa-Ramon, Q., Jiménez-Delgado, S., Wyatt, C., Miret-Cuesta, M., Irimia, M., Callan-Jones, A., Wieser, S., Ruprecht, V. (2021) Cooperative epithelial phagocytosis enables error correction in the early embryo. Nature. 590(7847):618-623

Horstick, E.J., Bayleyen, Y., Burgess, H.A. (2020) Molecular and cellular determinants of motor asymmetry in zebrafish. Nature communications. 11:1170

Huang, C.X., Wang, Z., Cheng, J., Zhu, Z., Guan, N.N., Song, J. (2022) De novo establishment of circuit modules restores locomotion after spinal cord injury in adult zebrafish. Cell Reports. 41:111535

Huang, K.H., Rupprecht, P., Frank, T., Kawakami, K., Bouwmeester, T., Friedrich, R.W. (2020) A virtual reality system to analyze neural activity and behavior in adult zebrafish. Nature Methods. 17(3):343-351

Hübner, K., Cabochette, P., Diéguez-Hurtado, R., Wiesner, C., Wakayama, Y., Grassme, K.S., Hubert, M., Guenther, S., Belting, H.G., Affolter, M., Adams, R.H., Vanhollebeke, B., Herzog, W. (2018) Wnt/β-catenin signaling regulates VE-cadherin-mediated anastomosis of brain capillaries by counteracting S1pr1 signaling. Nature communications. 9:4860

Iida, A., Wang, Z., Hirata, H., Sehara-Fujisawa, A. (2018) Integrin β1 activity is required for cardiovascular formation in zebrafish. Genes to cells : devoted to molecular & cellular mechanisms. 23(11):938-951

Isiaku, A.I., Zhang, Z., Pazhakh, V., Manley, H.R., Thompson, E.R., Fox, L.C., Yerneni, S., Blombery, P., Lieschke, G.J. (2021) Transient, flexible gene editing in zebrafish neutrophils and macrophages for determination of cell-autonomous functions. Disease models & mechanisms. 14(7):

Itoh, T., Takeuchi, M., Sakagami, M., Asakawa, K., Sumiyama, K., Kawakami, K., Shimizu, T., Hibi, M. (2020) Gsx2 is required for specification of neurons in the inferior olivary nuclei from Ptf1a-expressing neural progenitors in zebrafish. Development (Cambridge, England). 147(19):

Iwasaki, M., Kuroda, J., Kawakami, K., Wada, H. (2018) Epidermal regulation of bone morphogenesis through the development and regeneration of osteoblasts in the zebrafish scale. Developmental Biology. 437(2):105-119

Jacobo, A., Dasgupta, A., Erzberger, A., Siletti, K., Hudspeth, A.J. (2019) Notch-Mediated Determination of Hair-Bundle Polarity in Mechanosensory Hair Cells of the Zebrafish Lateral Line. Current biology : CB. 29(21):3579-3587.e7

Jardin, N., Giudicelli, F., Ten Martín, D., Vitrac, A., De Gois, S., Allison, R., Houart, C., Reid, E., Hazan, J., Fassier, C. (2018) BMP- and Neuropilin-1-mediated motor axon navigation relies on spastin alternative translation. Development (Cambridge, England). 145(17):

Jesuthasan, S., Krishnan, S., Cheng, R.K., Mathuru, A. (2020) Neural correlates of state transitions elicited by a chemosensory danger cue. Progress in neuro-psychopharmacology & biological psychiatry. 111:110110

Jiao, Z.F., Shang, C.F., Wang, Y.F., Yang, Z., Yang, C., Li, F.N., Xie, J.Z., Pan, J.W., Fu, L., Du, J.L. (2018) All-optical imaging and manipulation of whole-brain neuronal activities in behaving larval zebrafish. Biomedical Optics Express. 9:6154-6169

John, N., Kolb, J., Wehner, D. (2022) Mechanical spinal cord transection in larval zebrafish and subsequent whole-mount histological processing. STAR protocols. 3:101093

Juan, T., Ribeiro da Silva, A., Cardoso, B., Lim, S., Charteau, V., Stainier, D.Y.R. (2023) Multiple pkd and piezo gene family members are required for atrioventricular valve formation. Nature communications. 14:214214

Jung, H.M., Castranova, D., Swift, M.R., Pham, V.N., Galanternik, M.V., Isogai, S., Butler, M.G., Mulligan, T.S., Weinstein, B.M. (2017) Development of the larval lymphatic system in the zebrafish. Development (Cambridge, England). 144(11):2070-2081

Kamel, S.M., Koopman, C.D., Kruse, F., Willekers, S., Chocron, S., Bakkers, J. (2021) A Heterozygous Mutation in Cardiac Troponin T Promotes Ca²⁺ Dysregulation and Adult Cardiomyopathy in Zebrafish. Journal of cardiovascular development and disease. 8(4):

Kamezaki, A., Sato, F., Aoki, K., Asakawa, K., Kawakami, K., Matsuzaki, F., Sehara-Fujisawa, A. (2016) Visualization of Neuregulin 1 ectodomain shedding reveals its local processing in vitro and in vivo. Scientific Reports. 6:28873

Kashiwada, T., Fukuhara, S., Terai, K., Tanaka, T., Wakayama, Y., Ando, K., Nakajima, H., Fukui, H., Yuge, S., Saito, Y., Gemma, A., Mochizuki, N. (2015) β-catenin-dependent transcription is central to Bmp-mediated formation of venous vessels. Development (Cambridge, England). 142(3):497-509

Kaur, P., Kibat, C., Teo, E., Gruber, J., Mathuru, A., Tolwinski, A.N.S. (2020) Use of Optogenetic Amyloid-β to Monitor Protein Aggregation in Drosophila melanogaster, Danio rerio and Caenorhabditis elegans. Bio-protocol. 10:e3856

Kelu, J.J., Webb, S.E., Galione, A., Miller, A.L. (2018) TPC2-mediated Ca²⁺ signaling is required for the establishment of synchronized activity in developing zebrafish primary motor neurons.. Developmental Biology. 438(1):57-68

Kermen, F., Lal, P., Faturos, N.G., Yaksi, E. (2020) Interhemispheric connections between olfactory bulbs improve odor detection. PLoS Biology. 18:e3000701

Kimura, Y., Higashijima, S.I. (2019) Regulation of locomotor speed and selection of active sets of neurons by V1 neurons. Nature communications. 10:2268

Kioka, H., Kato, H., Fujita, T., Asano, Y., Shintani, Y., Yamazaki, S., Tsukamoto, O., Imamura, H., Kogo, M., Kitakaze, M., Sakata, Y., Takashima, S. (2020) In vivo real-time ATP imaging in zebrafish hearts reveals G0s2 induces ischemic tolerance. FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 34(2):2041-2054

Kishore, S., Cadoff, E.B., Agha, M.A., McLean, D.L. (2020) Orderly compartmental mapping of premotor inhibition in the developing zebrafish spinal cord. Science (New York, N.Y.). 370:431-436

Kler, S., Ma, M., Narayan, S., Ahrens, M.B., Pan, Y.A. (2021) Cre-Dependent Anterograde Transsynaptic Labeling and Functional Imaging in Zebrafish Using VSV With Reduced Cytotoxicity. Frontiers in Neuroanatomy. 15:758350

Knogler, L.D., Markov, D.A., Dragomir, E.I., Štih, V., Portugues, R. (2017) Sensorimotor Representations in Cerebellar Granule Cells in Larval Zebrafish Are Dense, Spatially Organized, and Non-temporally Patterned. Current biology : CB. 27(9):1288-1302

Kobayashi, I., Kobayashi-Sun, J., Hirakawa, Y., Ouchi, M., Yasuda, K., Kamei, H., Fukuhara, S., Yamaguchi, M. (2019) Dual role of Jam3b in early hematopoietic and vascular development. Development (Cambridge, England). 147(1):

Kocere, A., Resseguier, J., Wohlmann, J., Skjeldal, F.M., Khan, S., Speth, M., Dal, N.K., Ng, M.Y.W., Alonso-Rodriguez, N., Scarpa, E., Rizzello, L., Battaglia, G., Griffiths, G., Fenaroli, F. (2020) Real-time imaging of polymersome nanoparticles in zebrafish embryos engrafted with melanoma cancer cells: Localization, toxicity and treatment analysis. EBioMedicine. 58:102902

Koide, T., Miyasaka, N., Morimoto, K., Asakawa, K., Urasaki, A., Kawakami, K., and Yoshihara, Y. (2009) Olfactory neural circuitry for attraction to amino acids revealed by transposon-mediated gene trap approach in zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 106(24):9884-9889

Koltowska, K., Lagendijk, A.K., Pichol-Thievend, C., Fischer, J.C., Francois, M., Ober, E.A., Yap, A.S., Hogan, B.M. (2015) Vegfc Regulates Bipotential Precursor Division and Prox1 Expression to Promote Lymphatic Identity in Zebrafish. Cell Reports. 13:1828-41

Kondrychyn, I., Kelly, D.J., Carretero, N.T., Nomori, A., Kato, K., Chong, J., Nakajima, H., Okuda, S., Mochizuki, N., Phng, L.K. (2020) Marcksl1 modulates endothelial cell mechanoresponse to haemodynamic forces to control blood vessel shape and size. Nature communications. 11:5476

Korkmazhan, E., Kennard, A.S., Garzon-Coral, C., Vasquez, C.G., Dunn, A.R. (2022) Tether-guided lamellipodia enable rapid wound healing. Biophysical journal. 121(6):1029-1037

Koyama, W., Hosomi, R., Matsuda, K., Kawakami, K., Hibi, M., Shimizu, T. (2021) Involvement of cerebellar neural circuits in active avoidance conditioning in zebrafish. eNeuro. 8(3):

Kröll-Hermi, A., Ebstein, F., Stoetzel, C., Geoffroy, V., Schaefer, E., Scheidecker, S., Bär, S., Takamiya, M., Kawakami, K., Zieba, B.A., Studer, F., Pelletier, V., Eyermann, C., Speeg-Schatz, C., Laugel, V., Lipsker, D., Sandron, F., McGinn, S., Boland, A., Deleuze, J.F., Kuhn, L., Chicher, J., Hammann, P., Friant, S., Etard, C., Krüger, E., Muller, J., Strähle, U., Dollfus, H. (2020) Proteasome subunit PSMC3 variants cause neurosensory syndrome combining deafness and cataract due to proteotoxic stress. EMBO Molecular Medicine. 12(7):e11861

Kumar, M., Kishore, S., Nasenbeny, J., McLean, D.L., Kozorovitskiy, Y. (2018) Integrated one- and two-photon scanned oblique plane illumination (SOPi) microscopy for rapid volumetric imaging. Optics express. 26:13027-13041

Kuriki, M., Sato, F., Arai, H.N., Sogabe, M., Kaneko, M., Kiyonari, H., Kawakami, K., Yoshimoto, Y., Shukunami, C., Sehara-Fujisawa, A. (2020) Transient and lineage-restricted requirement of Ebf3 for sternum ossification. Development (Cambridge, England). 147(9):

Kärpanen, T., Padberg, Y., van de Pavert, S.A., Dierkes, C., Morooka, N., Peterson-Maduro, J., van de Hoek, G., Adrian, M., Mochizuki, N., Sekiguchi, K., Kiefer, F., Schulte, D., Schulte-Merker, S. (2017) An Evolutionarily Conserved Role for Polydom/Svep1 During Lymphatic Vessel Formation. Circulation research. 120(8):1263-1275

Lagendijk, A.K., Gomez, G.A., Baek, S., Hesselson, D., Hughes, W.E., Paterson, S., Conway, D.E., Belting, H.G., Affolter, M., Smith, K.A., Schwartz, M.A., Yap, A.S., Hogan, B.M. (2017) Live imaging molecular changes in junctional tension upon VE-cadherin in zebrafish. Nature communications. 8:1402

Lal, P., Tanabe, H., Suster, M.L., Ailani, D., Kotani, Y., Muto, A., Itoh, M., Iwasaki, M., Wada, H., Yaksi, E., Kawakami, K. (2018) Identification of a neuronal population in the telencephalon essential for fear conditioning in zebrafish. BMC Biology. 16:45

Leacock, S., Syed, P., James, V.M., Bode, A., Kawakami, K., Keramidas, A., Suster, M., Lynch, J.W., Harvey, R.J. (2018) Structure/Function Studies of the α4 Subunit Reveal Evolutionary Loss of a GlyR Subtype Involved in Startle and Escape Responses. Frontiers in molecular neuroscience. 11:23

Lee, M., Betz, C., Yin, J., Paatero, I., Schellinx, N., Carte, A.N., Wilson, C.W., Ye, W., Affolter, M., Belting, H.G. (2021) Control of dynamic cell behaviors during angiogenesis and anastomosis by Rasip1. Development (Cambridge, England). 148(15):

Lenard, A., Daetwyler, S., Betz, C., Ellertsdottir, E., Belting, H.G., Huisken, J., Affolter, M. (2015) Endothelial Cell Self-fusion during Vascular Pruning. PLoS Biology. 13(4):e1002126

Leonard, E.V., Figueroa, R.J., Bussmann, J., Lawson, N.D., Amigo, J.D., Siekmann, A.F. (2022) Regenerating vascular mural cells in zebrafish fin blood vessels are not derived from pre-existing ones and differentially require pdgfrb signalling for their development. Development (Cambridge, England). 149(7)

Lim, C.H., Kaur, P., Teo, E., Lam, V.Y.M., Zhu, F., Kibat, C., Gruber, J., Mathuru, A.S., Tolwinski, N.S. (2020) Application of optogenetic Amyloid-β distinguishes between metabolic and physical damages in neurodegeneration. eLIFE. 9:

Liu, C., Wu, C., Yang, Q., Gao, J., Li, L., Yang, D., Luo, L. (2016) Macrophages Mediate the Repair of Brain Vascular Rupture through Direct Physical Adhesion and Mechanical Traction. Immunity. 44(5):1162-76

LLeras Forero, L., Narayanan, R., Huitema, L.F.A., VanBergen, M., Apschner, A., Peterson-Maduro, J., Logister, I., Valentin, G., Morelli, L.G., Oates, A., Schulte-Merker, S. (2018) Segmentation of the zebrafish axial skeleton relies on notochord sheath cells and not on the segmentation clock. eLIFE. 7

Lopez-Baez, J.C., Simpson, D.J., LLeras Forero, L., Zeng, Z., Brunsdon, H., Salzano, A., Brombin, A., Wyatt, C., Rybski, W., Huitema, L.F.A., Dale, R.M., Kawakami, K., Englert, C., Chandra, T., Schulte-Merker, S., Hastie, N.D., Patton, E.E. (2018) Wilms Tumor 1b defines a wound-specific sheath cell subpopulation associated with notochord repair.. eLIFE. 7

Lozano-Gil, J.M., Rodríguez-Ruiz, L., Tyrkalska, S.D., García-Moreno, D., Pérez-Oliva, A.B., Mulero, V. (2022) Gasdermin E mediates pyroptotic cell death of neutrophils and macrophages in a zebrafish model of chronic skin inflammation. Developmental and comparative immunology. 132:104404

Mackowetzky, K., Dicipulo, R., Fox, S.C., Philibert, D.A., Todesco, H., Doshi, J.D., Kawakami, K., Tierney, K., Waskiewicz, A.J. (2022) Retinoic Acid Signaling Regulates Late Stages of Semicircular Canal Morphogenesis and Otolith Maintenance in the Zebrafish Inner Ear. Developmental Dynamics : an official publication of the American Association of Anatomists. 251(11):1798-1815

Marquart, G.D., Tabor, K.M., Bergeron, S.A., Briggman, K.L., Burgess, H.A. (2019) Prepontine non-giant neurons drive flexible escape behavior in zebrafish. PLoS Biology. 17:e3000480

Marquart, G.D., Tabor, K.M., Horstick, E.J., Brown, M., Geoca, A.K., Polys, N.F., Nogare, D.D., Burgess, H.A. (2017) High-precision registration between zebrafish brain atlases using symmetric diffeomorphic normalization. GigaScience. 6:1-15

Marsden, K.C., Granato, M. (2015) In Vivo Ca(2+) Imaging Reveals that Decreased Dendritic Excitability Drives Startle Habituation. Cell Reports. 13:1733-40

Martin, A., Babbitt, A., Pickens, A.G., Pickett, B.E., Hill, J.T., Suli, A. (2022) Single-Cell RNA Sequencing Characterizes the Molecular Heterogeneity of the Larval Zebrafish Optic Tectum. Frontiers in molecular neuroscience. 15:818007

Matsuoka, R.L., Marass, M., Avdesh, A., Helker, C.S., Maischein, H.M., Grosse, A.S., Kaur, H., Lawson, N.D., Herzog, W., Stainier, D.Y. (2016) Radial glia regulate vascular patterning around the developing spinal cord. eLIFE. 5

Mauri, C., van Impel, A., Mackay, E.W., Schulte-Merker, S. (2021) The adaptor protein Grb2b is an essential modulator for lympho-venous sprout formation in the zebrafish trunk. Angiogenesis. 24(2):345-362

McCallum, S., Obata, Y., Fourli, E., Boeing, S., Peddie, C.J., Xu, Q., Horswell, S., Kelsh, R., Collinson, L., Wilkinson, D., Pin, C., Pachnis, V., Heanue, T.A. (2020) Enteric glia as a source of neural progenitors in adult zebrafish. eLIFE. 9:

Menelaou, E., McLean, D.L. (2019) Hierarchical control of locomotion by distinct types of spinal V2a interneurons in zebrafish. Nature communications. 10:4197

Mesquita, F.S., Brito, C., Mazon Moya, M.J., Pinheiro, J.C., Mostowy, S., Cabanes, D., Sousa, S. (2017) Endoplasmic reticulum chaperone Gp96 controls actomyosin dynamics and protects against pore-forming toxins. EMBO reports. 18:303-318

Miyasaka, N., Arganda-Carreras, I., Wakisaka, N., Masuda, M., Sümbül, U., Seung, H.S., Yoshihara, Y. (2014) Olfactory projectome in the zebrafish forebrain revealed by genetic single-neuron labelling. Nature communications. 5:3639

Mizoguchi, T., Fukada, M., Iihama, M., Song, X., Fukagawa, S., Kuwabara, S., Omaru, S., Higashijima, S.I., Itoh, M. (2020) Transient activation of the Notch-her15.1 axis plays an important role in the maturation of V2b interneurons. Development (Cambridge, England). 147(16):

Mizoguchi, T., Kawakami, K., Itoh, M. (2016) Zebrafish lines expressing UAS-driven red probes for monitoring cytoskeletal dynamics. Genesis (New York, N.Y. : 2000). 54(9):483-9

Montgomery, J.E., Wahlstrom-Helgren, S., Vanpelt, K.T., Masino, M.A. (2021) Repetitive optogenetic stimulation of glutamatergic neurons: An alternative to NMDA treatment for generating locomotor activity in spinalized zebrafish larvae. Physiological Reports. 9:e14774

Moreman, J., Takesono, A., Trznadel, M., Winter, M., Perry, A., Wood, M., Rogers, N.J., Kudoh, T., Tyler, C.R. (2018) Estrogenic mechanisms and cardiac responses following early life exposure to Bisphenol A (BPA) and its metabolite 4-methyl-2,4-bis(p-hydroxyphenyl)pent-1-ene (MBP) in zebrafish. Environmental science & technology. 52(11):6656-6665

Morooka, N., Futaki, S., Sato-Nishiuchi, R., Nishino, M., Totani, Y., Shimono, C., Nakano, I., Nakajima, H., Mochizuki, N., Sekiguchi, K. (2017) Polydom Is an Extracellular Matrix Protein Involved in Lymphatic Vessel Remodeling. Circulation research. 120:1276-1288

Mostowy, S., Boucontet, L., Mazon Moya, M.J., Sirianni, A., Boudinot, P., Hollinshead, M., Cossart, P., Herbomel, P., Levraud, J.P., and Colucci-Guyon, E. (2013) The Zebrafish as a New Model for the In Vivo Study of Shigella flexneri Interaction with Phagocytes and Bacterial Autophagy. PLoS pathogens. 9(9):e1003588

Mullapudi, S.T., Boezio, G.L.M., Rossi, A., Marass, M., Matsuoka, R.L., Matsuda, H., Helker, C.S.M., Yang, Y.H.C., Stainier, D.Y.R. (2019) Disruption of the pancreatic vasculature in zebrafish affects islet architecture and function. Development (Cambridge, England). 146(21):

Muto, A., and Kawakami, K. (2013) Prey capture in zebrafish larvae serves as a model to study cognitive functions. Frontiers in neural circuits. 7:110

Muto, A., Ohkura, M., Abe, G., Nakai, J., and Kawakami, K. (2013) Real-Time Visualization of Neuronal Activity during Perception. Current biology : CB. 23(4):307-311

Nagao, T., Shintani, Y., Hayashi, T., Kioka, H., Kato, H., Nishida, Y., Yamazaki, S., Tsukamoto, O., Yashirogi, S., Yazawa, I., Asano, Y., Shinzawa-Itoh, K., Imamura, H., Suzuki, T., Suzuki, T., Goto, Y.I., Takashima, S. (2020) Higd1a improves respiratory function in the models of mitochondrial disorder. FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 34:1859-1871

Nagata, Y., Yamagishi, M., Konno, T., Nakanishi, C., Asano, Y., Ito, S., Nakajima, Y., Seguchi, O., Fujino, N., Kawashiri, M.A., Takashima, S., Kitakaze, M., Hayashi, K. (2017) Heat Failure Phenotypes Induced by Knockdown of DAPIT in Zebrafish: A New Insight into Mechanism of Dilated Cardiomyopathy. Scientific Reports. 7:17417

Nakajima, H., Yamamoto, K., Agarwala, S., Terai, K., Fukui, H., Fukuhara, S., Ando, K., Miyazaki, T., Yokota, Y., Schmelzer, E., Belting, H.G., Affolter, M., Lecaudey, V., Mochizuki, N. (2017) Flow-Dependent Endothelial YAP Regulation Contributes to Vessel Maintenance. Developmental Cell. 40:523-536.e6

Nakayama, S., Ikenaga, T., Kawakami, K., Ono, F., and Hatta, K. (2012) Transgenic line with gal4 insertion useful to study morphogenesis of craniofacial perichondrium, vascular endothelium-associated cells, floor plate, and dorsal midline radial glia during zebrafish development. Development, growth & differentiation. 54(2):202-215

Nelson, J.C., Witze, E., Ma, Z., Ciocco, F., Frerotte, A., Randlett, O., Foskett, J.K., Granato, M. (2020) Acute Regulation of Habituation Learning via Posttranslational Palmitoylation. Current biology : CB. 30(14):2729-2738.e4

Nicenboim, J., Malkinson, G., Lupo, T., Asaf, L., Sela, Y., Mayseless, O., Gibbs-Bar, L., Senderovich, N., Hashimshony, T., Shin, M., Jerafi-Vider, A., Avraham-Davidi, I., Krupalnik, V., Hofi, R., Almog, G., Astin, J.W., Golani, O., Ben-Dor, S., Crosier, P.S., Herzog, W., Lawson, N.D., Hanna, J.H., Yanai, I., Yaniv, K. (2015) Lymphatic vessels arise from specialized angioblasts within a venous niche. Nature. 522(7554):56-61

Nimura, T., Itoh, T., Hagio, H., Hayashi, T., Di Donato, V., Takeuchi, M., Itoh, T., Inoguchi, F., Sato, Y., Yamamoto, N., Katsuyama, Y., Del Bene, F., Shimizu, T., Hibi, M. (2019) Role of Reelin in cell positioning in the cerebellum and the cerebellum-like structure in zebrafish. Developmental Biology. 455(2):393-408

Nogare, D.D., Nikaido, M., Somers, K., Head, J., Piotrowski, T., Chitnis, A. (2017) In toto imaging of the migrating Zebrafish lateral line primordium at single cell resolution. Developmental Biology. 422(1):14-23

Ogino, K., Yamada, K., Nishioka, T., Oda, Y., Kaibuchi, K., Hirata, H. (2019) Phosphorylation of gephyrin in zebrafish Mauthner cells governs glycine receptor clustering and behavioral desensitization to sound. The Journal of neuroscience : the official journal of the Society for Neuroscience. 39(45):8988-8997

Ohno, M., Nikaido, M., Horiuchi, N., Kawakami, K., Hatta, K. (2020) Enteric nervous system can regenerate in zebrafish larva via migration into the ablated area and proliferation of neural crest-derived cells. Development (Cambridge, England). 148(2):

Okuda, K.S., Astin, J.W., Misa, J.P., Flores, M.V., Crosier, K.E., and Crosier, P.S. (2012) lyve1 expression reveals novel lymphatic vessels and new mechanisms for lymphatic vessel development in zebrafish. Development (Cambridge, England). 139(13):2381-2391

Oldfield, C.S., Grossrubatscher, I., Chávez, M., Hoagland, A., Huth, A.R., Carroll, E.C., Prendergast, A., Qu, T., Gallant, J.L., Wyart, C., Isacoff, E.Y. (2020) Experience, circuit dynamics and forebrain recruitment in larval zebrafish prey capture. eLIFE. 9:

Paatero, I., Sauteur, L., Lee, M., Lagendijk, A.K., Heutschi, D., Wiesner, C., Guzmán, C., Bieli, D., Hogan, B.M., Affolter, M., Belting, H.G. (2018) Junction-based lamellipodia drive endothelial cell rearrangements in vivo via a VE-cadherin-F-actin based oscillatory cell-cell interaction. Nature communications. 9:3545

Palha, N., Guivel-Benhassine, F., Briolat, V., Lutfalla, G., Sourisseau, M., Ellett, F., Wang, C.H., Lieschke, G.J., Herbomel, P., Schwartz, O., and Levraud, J.P. (2013) Real-time whole-body visualization of chikungunya virus infection and host interferon response in zebrafish. PLoS pathogens. 9(9):e1003619

Pandey, S., Shekhar, K., Regev, A., Schier, A.F. (2018) Comprehensive Identification and Spatial Mapping of Habenular Neuronal Types Using Single-Cell RNA-Seq. Current biology : CB. 28(7):1052-1065.e7

Pantoja, C., Larsch, J., Laurell, E., Marquart, G., Kunst, M., Baier, H. (2020) Rapid Effects of Selection on Brain-wide Activity and Behavior. Current biology : CB. 30(18):3647-3656.e3

Parab, S., Quick, R.E., Matsuoka, R.L. (2021) Endothelial cell type-specific molecular requirements for angiogenesis drive fenestrated vessel development in the brain. eLIFE. 10:

Paudel, S., Gjorcheska, S., Bump, P., Barske, L. (2022) Patterning of cartilaginous condensations in the developing facial skeleton. Developmental Biology. 486:44-55

Pedroni, A., Ampatzis, K. (2019) Large-Scale Analysis of the Diversity and Complexity of the Adult Spinal Cord Neurotransmitter Typology. iScience. 19:1189-1201

Pestel, J., Ramadass, R., Gauvrit, S., Helker, C., Herzog, W., Stainier, D.Y. (2016) Real-time 3D visualization of cellular rearrangements during cardiac valve formation. Development (Cambridge, England). 143:2217-27

Phan, Q.T., Sipka, T., Gonzalez, C., Levraud, J.P., Lutfalla, G., Nguyen-Chi, M. (2018) Neutrophils use superoxide to control bacterial infection at a distance. PLoS pathogens. 14:e1007157

Pipalia, T.G., Koth, J., Roy, S.D., Hammond, C.L., Kawakami, K., Hughes, S.M. (2016) Cellular dynamics of regeneration reveals role of two distinct Pax7 stem cell populations in larval zebrafish muscle repair. Disease models & mechanisms. 9(6):671-84

Plata, A.L.D., Robles, E. (2022) NMDA receptor antagonist MK801 reduces dendritic spine density and stability in zebrafish pyramidal neurons. Neuroscience. 498:50-63

Pujol-Martí, J., Faucherre, A., Aziz-Bose, R., Asgharsharghi, A., Colombelli, J., Trapani, J.G., López-Schier, H. (2014) Converging Axons Collectively Initiate and Maintain Synaptic Selectivity in a Constantly Remodeling Sensory Organ. Current biology : CB. 24(24):2968-74

Pérez-Rius, C., Castellanos, A., Gaitán-Peñas, H., Navarro, A., Artuch, R., Barrallo-Gimeno, A., Estévez, R. (2019) Role of zebrafish ClC-K/barttin channels in apical kidney chloride reabsorption. The Journal of physiology. 597(15):3969-3983

Quillien, A., Gilbert, G., Boulet, M., Ethuin, S., Waltzer, L., Vandel, L. (2021) Prmt5 promotes vascular morphogenesis independently of its methyltransferase activity. PLoS Genetics. 17:e1009641

Rajan, A.M., Ma, R.C., Kocha, K.M., Zhang, D.J., Huang, P. (2020) Dual function of perivascular fibroblasts in vascular stabilization in zebrafish. PLoS Genetics. 16:e1008800

Ramspacher, C., Steed, E., Boselli, F., Ferreira, R., Faggianelli, N., Roth, S., Spiegelhalter, C., Messaddeq, N., Trinh, L., Liebling, M., Chacko, N., Tessadori, F., Bakkers, J., Laporte, J., Hnia, K., Vermot, J. (2015) Developmental Alterations in Heart Biomechanics and Skeletal Muscle Function in Desmin Mutants Suggest an Early Pathological Root for Desminopathies. Cell Reports. 11:1564-76

Ratnayake, D., Nguyen, P.D., Rossello, F.J., Wimmer, V.C., Tan, J.L., Galvis, L.A., Julier, Z., Wood, A.J., Boudier, T., Isiaku, A.I., Berger, S., Oorschot, V., Sonntag, C., Rogers, K.L., Marcelle, C., Lieschke, G.J., Martino, M.M., Bakkers, J., Currie, P.D. (2021) Macrophages provide a transient muscle stem cell niche via NAMPT secretion. Nature. 591(7849):281-287

Reinoß, P., Ciglieri, E., Minére, M., Bremser, S., Klein, A., Löhr, H., Fuller, P.M., Büschges, A., Kloppenburg, P., Fenselau, H., Hammerschmidt, M. (2020) Hypothalamic Pomc Neurons Innervate the Spinal Cord and Modulate the Excitability of Premotor Circuits. Current biology : CB. 30(23):4579-4593.e7

Renz, M., Otten, C., Faurobert, E., Rudolph, F., Zhu, Y., Boulday, G., Duchene, J., Mickoleit, M., Dietrich, A.C., Ramspacher, C., Steed, E., Manet-Dupé, S., Benz, A., Hassel, D., Vermot, J., Huisken, J., Tournier-Lasserve, E., Felbor, U., Sure, U., Albiges-Rizo, C., Abdelilah-Seyfried, S. (2015) Regulation of β1 Integrin-Klf2-Mediated Angiogenesis by CCM Proteins. Developmental Cell. 32:181-190

Rochon, E.R., Wright, D.S., Schubert, M.M., Roman, B.L. (2015) Context-specific interactions between Notch and ALK1 cannot explain ALK1-associated arteriovenous malformations. Cardiovascular research. 107(1):143-52

Ryu, J.R., Ahuja, S., Arnold, C.R., Potts, K.G., Mishra, A., Yang, Q., Sargurupremraj, M., Mahoney, D.J., Seshadri, S., Debette, S., Childs, S.J. (2022) Stroke-associated intergenic variants modulate a human FOXF2 transcriptional enhancer. Proceedings of the National Academy of Sciences of the United States of America. 119:e2121333119

Sato, Y., Mukai, M., Ueda, J., Muraki, M., Stasevich, T.J., Horikoshi, N., Kujirai, T., Kita, H., Kimura, T., Hira, S., Okada, Y., Hayashi-Takanaka, Y., Obuse, C., Kurumizaka, H., Kawahara, A., Yamagata, K., Nozaki, N., and Kimura, H. (2013) Genetically encoded system to track histone modification in vivo. Scientific Reports. 3:2436

Satou, C., Sugioka, T., Uemura, Y., Shimazaki, T., Zmarz, P., Kimura, Y., Higashijima, S.I. (2020) Functional Diversity of Glycinergic Commissural Inhibitory Neurons in Larval Zebrafish. Cell Reports. 30:3036-3050.e4

Sauteur, L., Krudewig, A., Herwig, L., Ehrenfeuchter, N., Lenard, A., Affolter, M., Belting, H.G. (2014) Cdh5/VE-cadherin Promotes Endothelial Cell Interface Elongation via Cortical Actin Polymerization during Angiogenic Sprouting. Cell Reports. 9:504-13

Sawamiphak, S., Kontarakis, Z., Stainier, D.Y. (2014) Interferon Gamma Signaling Positively Regulates Hematopoietic Stem Cell Emergence. Developmental Cell. 31:640-653

Severi, K.E., Böhm, U.L., Wyart, C. (2018) Investigation of hindbrain activity during active locomotion reveals inhibitory neurons involved in sensorimotor processing. Scientific Reports. 8:13615

Shibata-Germanos, S., Goodman, J.R., Grieg, A., Trivedi, C.A., Benson, B.C., Foti, S.C., Faro, A., Castellan, R.F.P., Correra, R.M., Barber, M., Ruhrberg, C., Weller, R.O., Lashley, T., Iliff, J.J., Hawkins, T.A., Rihel, J. (2019) Structural and functional conservation of non-lumenized lymphatic endothelial cells in the mammalian leptomeninges. Acta Neuropathologica. 139(2):383-401

Shimizu, Y., Ito, Y., Tanaka, H., Ohshima, T. (2015) Radial glial cell-specific ablation in the adult zebrafish brain. Genesis (New York, N.Y. : 2000). 53(7):431-9

Shin, M., Male, I., Beane, T.J., Villefranc, J.A., Kok, F.O., Zhu, L.J., Lawson, N.D. (2016) Vegfc acts through ERK to induce sprouting and differentiation of trunk lymphatic progenitors. Development (Cambridge, England). 143(20):3785-3795

Shinya, M., Kobayashi, K., Masuda, A., Tokumoto, M., Ozaki, Y., Saito, K., Kawasaki, T., Sado, Y., and Sakai, N. (2013) Properties of gene knockdown system by vector-based siRNA in zebrafish. Development, growth & differentiation. 55(9):755-765

Shoenhard, H., Jain, R.A., Granato, M. (2022) The calcium-sensing receptor (CaSR) regulates zebrafish sensorimotor decision making via a genetically defined cluster of hindbrain neurons. Cell Reports. 41:111790111790

Stednitz, S.J., McDermott, E.M., Ncube, D., Tallafuss, A., Eisen, J.S., and Washbourne, P. (2018) Forebrain Control of Behaviorally Driven Social Orienting in Zebrafish. Current biology : CB. 28(15):2445-2451.e3

Sternberg, J.R., Severi, K.E., Fidelin, K., Gomez, J., Ihara, H., Alcheikh, Y., Hubbard, J.M., Kawakami, K., Suster, M., Wyart, C. (2016) Optimization of a Neurotoxin to Investigate the Contribution of Excitatory Interneurons to Speed Modulation In Vivo. Current biology : CB. 26(17):2319-28

Strate, I., Tessadori, F., Bakkers, J. (2015) Glypican4 promotes cardiac specification and differentiation by attenuating canonical Wnt and Bmp signaling. Development (Cambridge, England). 142:1767-76

Sun, L., Chen, F., Peng, G. (2015) Conserved Noncoding Sequences Regulate lhx5 Expression in the Zebrafish Forebrain. PLoS One. 10:e0132525

Suster, M.L., Kania, A., Liao, M., Asakawa, K., Charron, F., Kawakami, K., and Drapeau, P. (2009) A novel conserved evx1 enhancer links spinal interneuron morphology and cis-regulation from fish to mammals. Developmental Biology. 325(2):422-433

Tabor, K.M., Marquart, G.D., Hurt, C., Smith, T.S., Geoca, A.K., Bhandiwad, A.A., Subedi, A., Sinclair, J.L., Rose, H.M., Polys, N.F., Burgess, H.A. (2019) Brain-wide cellular resolution imaging of Cre transgenic zebrafish lines for functional circuit-mapping. eLIFE. 8

Takesono, A., Schirrmacher, P., Scott, A., Green, J.M., Lee, O., Winter, M.J., Kudoh, T., Tyler, C.R. (2022) Estrogens regulate early embryonic development of the olfactory sensory system via estrogen-responsive glia. Development (Cambridge, England). 149(1):

Takeuchi, M., Yamaguchi, S., Sakakibara, M., Hayashi, T., Matsuda, K., Hara, Y., Tanegashima, C., Shimizu, T., Kuraku, S., Hibi, M. (2017) Gene expression profiling of granule cells and Purkinje cells in the zebrafish cerebellum. The Journal of comparative neurology. 525(7):1558-1585

Tallafuss, A., Stednitz, S.J., Voeun, M., Levichev, A., Larsch, J., Eisen, J., Washbourne, P. (2022) Egr1 is necessary for forebrain dopaminergic signaling during social behavior. eNeuro. 9(2):

Tanaka, Y., Hayashi, K., Fujino, N., Konno, T., Tada, H., Nakanishi, C., Hodatsu, A., Tsuda, T., Nagata, Y., Teramoto, R., Yoshida, S., Nomura, A., Kawashiri, M.A., Yamagishi, M. (2018) Functional analysis of KCNH2 gene mutations of type 2 long QT syndrome in larval zebrafish using microscopy and electrocardiography. Heart and vessels. 34(1):159-166

Tanimoto, M., Watakabe, I., Higashijima, S.I. (2022) Tiltable objective microscope visualizes selectivity for head motion direction and dynamics in zebrafish vestibular system. Nature communications. 13:76227622

Taylor, S.M., Alvarez-Delfin, K., Saade, C.J., Thomas, J.L., Thummel, R., Fadool, J.M., Hitchcock, P.F. (2015) The bHLH Transcription Factor NeuroD Governs Photoreceptor Genesis and Regeneration Through Delta-Notch Signaling. Investigative ophthalmology & visual science. 56:7496-7515

Tesmer, A.L., Fields, N.P., Robles, E. (2022) Input from torus longitudinalis drives binocularity and spatial summation in zebrafish optic tectum. BMC Biology. 20:24

Tessadori, F., van Weerd, J.H., Burkhard, S.B., Verkerk, A.O., de Pater, E., Boukens, B.J., Vink, A., Christoffels, V.M., and Bakkers, J. (2012) Identification and functional characterization of cardiac pacemaker cells in zebrafish. PLoS One. 7(10):e47644

Torigoe, M., Islam, T., Kakinuma, H., Fung, C.C.A., Isomura, T., Shimazaki, H., Aoki, T., Fukai, T., Okamoto, H. (2021) Zebrafish capable of generating future state prediction error show improved active avoidance behavior in virtual reality. Nature communications. 12:5712

Totong, R., Schell, T., Lescroart, F., Ryckebüsch, L., Lin, Y.F., Zygmunt, T., Herwig, L., Krudewig, A., Gershoony, D., Belting, H.G., Affolter, M., Torres-Vazquez, J., and Yelon, D. (2011) The novel transmembrane protein Tmem2 is essential for coordination of myocardial and endocardial morphogenesis. Development (Cambridge, England). 138(19):4199-4205

Trivellin, G., Tirosh, A., Hernández-Ramírez, L.C., Gupta, T., Tsai-Morris, C.H., Faucz, F.R., Burgess, H.A., Feldman, B., Stratakis, C.A. (2020) The X-linked acrogigantism-associated gene gpr101 is a regulator of early embryonic development and growth in zebrafish. Molecular and Cellular Endocrinology. 520:111091

Tsata, V., Möllmert, S., Schweitzer, C., Kolb, J., Möckel, C., Böhm, B., Rosso, G., Lange, C., Lesche, M., Hammer, J., Kesavan, G., Beis, D., Guck, J., Brand, M., Wehner, D. (2020) A switch in pdgfrb⁺ cell-derived ECM composition prevents inhibitory scarring and promotes axon regeneration in the zebrafish spinal cord. Developmental Cell. 56(4):509-524.e9

Tyrkalska, S.D., Pérez-Oliva, A.B., Rodríguez-Ruiz, L., Martínez-Morcillo, F.J., Alcaraz-Pérez, F., Martínez-Navarro, F.J., Lachaud, C., Ahmed, N., Schroeder, T., Pardo-Sánchez, I., Candel, S., López-Muñoz, A., Choudhuri, A., Rossmann, M.P., Zon, L.I., Cayuela, M.L., García-Moreno, D., Mulero, V. (2019) Inflammasome Regulates Hematopoiesis through Cleavage of the Master Erythroid Transcription Factor GATA1. Immunity. 51(1):50-63.e5

Uemura, Y., Kato, K., Kawakami, K., Kimura, Y., Oda, Y., Higashijima, S.I. (2020) Neuronal circuits that control rhythmic pectoral fin movements in zebrafish. The Journal of neuroscience : the official journal of the Society for Neuroscience. 40(35):6678-6690

Umeda, K., Ishizuka, T., Yawo, H., Shoji, W. (2016) Position- and quantity-dependent responses in zebrafish turning behavior. Scientific Reports. 6:27888

Urasaki, A., Morishita, S., Naka, K., Uozumi, M., Abe, K., Huang, L., Watase, E., Nakagawa, O., Kawakami, K., Matsui, T., Bessho, Y., Inagaki, N. (2019) Shootins mediate collective cell migration and organogenesis of the zebrafish posterior lateral line system. Scientific Reports. 9:12156

van Loon, A.P., Erofeev, I.S., Goryachev, A.B., Sagasti, A. (2021) Stochastic contraction of myosin minifilaments drives evolution of microridge protrusion patterns in epithelial cells. Molecular biology of the cell. 32(16):1501-1513

van Opbergen, C.J.M., Koopman, C.D., Kok, B.J.M., Knöpfel, T., Renninger, S.L., Orger, M.B., Vos, M.A., van Veen, T.A.B., Bakkers, J., de Boer, T.P. (2018) Optogenetic sensors in the zebrafish heart: a novel in vivo electrophysiological tool to study cardiac arrhythmogenesis. Theranostics. 8:4750-4764

Vasudevan, D., Liu, Y.C., Barrios, J.P., Wheeler, M.K., Douglass, A.D., Dorsky, R.I. (2021) Regenerated interneurons integrate into locomotor circuitry following spinal cord injury. Experimental neurology. 342:113737

Venero Galanternik, M., Castranova, D., Gore, A.V., Blewett, N.H., Jung, H.M., Stratman, A.N., Kirby, M.R., Iben, J., Miller, M.F., Kawakami, K., Maraia, R.J., Weinstein, B.M. (2017) A novel perivascular cell population in the zebrafish brain. eLIFE. 6

Vladimirov, N., Wang, C., Höckendorf, B., Pujala, A., Tanimoto, M., Mu, Y., Yang, C.T., Wittenbach, J.D., Freeman, J., Preibisch, S., Koyama, M., Keller, P.J., Ahrens, M.B. (2018) Brain-wide circuit interrogation at the cellular level guided by online analysis of neuronal function. Nature Methods. 15:1117-1125

Voltes, A., Hevia, C.F., Engel, C., Dingare, C., Calzolari, S., Terriente, J., Norden, C., Lecaudey, V., Pujades, C. (2019) Yap/Taz-TEAD activity links mechanical cues to progenitor cell behavior during zebrafish hindbrain segmentation. Development (Cambridge, England). 146(14):

Wada, H., Ghysen, A., Asakawa, K., Abe, G., Ishitani, T., and Kawakami, K. (2013) Wnt/Dkk Negative Feedback Regulates Sensory Organ Size in Zebrafish. Current biology : CB. 23(16):1559-65

Wada, Y., Tsukatani, H., Kuroda, C., Miyazaki, Y., Otoshi, M., Kobayashi, I. (2022) Jagged 2b induces intercellular signaling within somites to establish hematopoietic stem cell fate in zebrafish. Development (Cambridge, England). 149(7)

Wahlstrom-Helgren, S., Montgomery, J.E., Vanpelt, K.T., Biltz, S.L., Peck, J.H., Masino, M.A. (2019) Glutamate receptor subtypes differentially contribute to optogenetically-activated swimming in spinally-transected zebrafish larvae. Journal of neurophysiology. 122(6):2414-2426

Wakisaka, N., Miyasaka, N., Koide, T., Masuda, M., Hiraki-Kajiyama, T., Yoshihara, Y. (2017) An Adenosine Receptor for Olfaction in Fish. Current biology : CB. 27(10):1437-1447.e4

Warchol, M.E., Schrader, A., Sheets, L. (2021) Macrophages Respond Rapidly to Ototoxic Injury of Lateral Line Hair Cells but Are Not Required for Hair Cell Regeneration. Frontiers in Cellular Neuroscience. 14:613246

Wee, C.L., Song, E.Y., Johnson, R.E., Ailani, D., Randlett, O., Kim, J.Y., Nikitchenko, M., Bahl, A., Yang, C.T., Ahrens, M.B., Kawakami, K., Engert, F., Kunes, S. (2019) A bidirectional network for appetite control in larval zebrafish. eLIFE. 8:

Weijts, B., Gutierrez, E., Saikin, S.K., Ablooglu, A.J., Traver, D., Groisman, A., Tkachenko, E. (2018) Blood flow-induced Notch activation and endothelial migration enable vascular remodeling in zebrafish embryos. Nature communications. 9:5314

Wen, H., Eckenstein, K., Weihrauch, V., Stigloher, C., Brehm, P. (2020) Primary and secondary motoneurons use different calcium channel types to control escape and swimming behaviors in zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 117(42):26429-26437

Whitesell, T.R., Chrystal, P.W., Ryu, J.R., Munsie, N., Grosse, A., French, C.R., Workentine, M.L., Li, R., Zhu, L.J., Waskiewicz, A., Lehmann, O.J., Lawson, N.D., Childs, S.J. (2019) foxc1 is required for embryonic head vascular smooth muscle differentiation in zebrafish. Developmental Biology. 453(1):34-47

Willis, A.R., Moore, C., Mazon-Moya, M., Krokowski, S., Lambert, C., Till, R., Mostowy, S., Sockett, R.E. (2016) Injections of Predatory Bacteria Work Alongside Host Immune Cells to Treat Shigella Infection in Zebrafish Larvae. Current biology : CB. 26(24):3343-3351

Wolman, M.A., Jain, R.A., Marsden, K.C., Bell, H., Skinner, J., Hayer, K.E., Hogenesch, J.B., Granato, M. (2015) A Genome-wide Screen Identifies PAPP-AA-Mediated IGFR Signaling as a Novel Regulator of Habituation Learning. Neuron. 85(6):1200-11

Wu, Y., Dal Maschio, M., Kubo, F., Baier, H. (2020) An Optical Illusion Pinpoints an Essential Circuit Node for Global Motion Processing. Neuron. 108(4):722-734.e5

Xie, W., Jiao, B., Bai, Q., Ilin, V.A., Sun, M., Burton, C.E., Kolodieznyi, D., Calderon, M.J., Stolz, D.B., Opresko, P.L., St Croix, C.M., Watkins, S., Van Houten, B., Bruchez, M.P., Burton, E.A. (2020) Chemoptogenetic ablation of neuronal mitochondria in vivo with spatiotemporal precision and controllable severity. eLIFE. 9:

Xu, P., Yu, H.V., Tseng, K.C., Flath, M., Fabian, P., Segil, N., Crump, J.G. (2021) Foxc1 establishes enhancer accessibility for craniofacial cartilage differentiation. eLIFE. 10:

Yabuki, Y., Koide, T., Miyasaka, N., Wakisaka, N., Masuda, M., Ohkura, M., Nakai, J., Tsuge, K., Tsuchiya, S., Sugimoto, Y., Yoshihara, Y. (2016) Olfactory receptor for prostaglandin F2α mediates male fish courtship behavior. Nature Neuroscience. 19(7):897-904

Yang, E., Zwart, M.F., James, B., Rubinov, M., Wei, Z., Narayan, S., Vladimirov, N., Mensh, B.D., Fitzgerald, J.E., Ahrens, M.B. (2022) A brainstem integrator for self-location memory and positional homeostasis in zebrafish. Cell. 185:50115027.e205011-5027.e20

Yokogawa, T., Hannan, M.C., and Burgess, H.A. (2012) The Dorsal Raphe Modulates Sensory Responsiveness during Arousal in Zebrafish. The Journal of neuroscience : the official journal of the Society for Neuroscience. 32(43):15205-15215

Yoshida, K., Kawakami, K., Abe, G., Tamura, K. (2020) Zebrafish can regenerate endoskeleton in larval pectoral fin but the regenerative ability declines. Developmental Biology. 463(2):110-123

Yoshida, N., Frickel, E.M., Mostowy, S. (2017) Macrophage-Microbe Interactions: Lessons from the Zebrafish Model. Frontiers in immunology. 8:1703

Zaupa, M., Naini, S.M.A., Younes, M.A., Bullier, E., Duboué, E.R., Le Corronc, H., Soula, H., Wolf, S., Candelier, R., Legendre, P., Halpern, M.E., Mangin, J.M., Hong, E. (2021) Trans-inhibition of axon terminals underlies competition in the habenulo-interpeduncular pathway. Current biology : CB. 31(21):4762-4772.e5

Zhang, B.B., Yao, Y.Y., Zhang, H.F., Kawakami, K., Du, J.L. (2017) Left Habenula Mediates Light-Preference Behavior in Zebrafish via an Asymmetrical Visual Pathway. Neuron. 93(4):914-928.e4

Zhang, Y., Ouyang, J., Qie, J., Zhang, G., Liu, L., Yang, P. (2019) Optimization of the Gal4/UAS transgenic tools in zebrafish. Applied Microbiology and Biotechnology. 103(4):1789-1799

Zygmunt, T., Gay, C.M., Blondelle, J., Singh, M.K., Flaherty, K.M., Means, P.C., Herwig, L., Krudewig, A., Belting, H.G., Affolter, M., Epstein, J.A., and Torres-Vazquez, J. (2011) Semaphorin-PlexinD1 Signaling Limits Angiogenic Potential via the VEGF Decoy Receptor sFlt1. Developmental Cell. 21(2):301-314

Juan, T., Ribeiro da Silva, A., Cardoso, B., Lim, S., Charteau, V., Stainier, D.Y.R. (2023) Multiple pkd and piezo gene family members are required for atrioventricular valve formation. Nature communications. 14:214214

Banerjee, P., Joly, P., Jouneau, L., Jaszczyszyn, Y., Bourge, M., Affaticati, P., Levraud, J.P., Boudinot, P., Joly, J.S. (2022) Molecular and Cellular Analysis of the Repair of Zebrafish Optic Tectum Meninges Following Laser Injury. Cells. 11(13)

Bruckner, J.J., Stednitz, S.J., Grice, M.Z., Zaidan, D., Massaquoi, M.S., Larsch, J., Tallafuss, A., Guillemin, K., Washbourne, P., Eisen, J.S. (2022) The microbiota promotes social behavior by modulating microglial remodeling of forebrain neurons. PLoS Biology. 20:e3001838

Cairelli, A.G., Chow, R.W., Vermot, J., Yap, C.H. (2022) Fluid mechanics of the zebrafish embryonic heart trabeculation. PLoS Computational Biology. 18:e1010142

Chen, J., He, J., Luo, L. (2022) The brain vascular damage-induced lymphatic ingrowth is directed by Cxcl12b/Cxcr4a. Development (Cambridge, England). 149(13)

Coxam, B., Collins, R.T., Hußmann, M., Huisman, Y., Meier, K., Jung, S., Bartels-Klein, E., Szymborska, A., Finotto, L., Helker, C.S.M., Stainier, D.Y.R., Schulte-Merker, S., Gerhardt, H. (2022) Svep1 stabilizes developmental vascular anastomosis in reduced flow conditions. Development (Cambridge, England). 149(6):

Demy, D.L., Touret, A.L., Lancino, M., Tauzin, M., Capuana, L., Pierre, C., Herbomel, P. (2022) Trim33 conditions the lifespan of primitive macrophages and onset of definitive macrophage production. Development (Cambridge, England). 149(18):

Facchinello, N., Astone, M., Audano, M., Oberkersch, R.E., Spizzotin, M., Calura, E., Marques, M., Crisan, M., Mitro, N., Santoro, M.M. (2022) Oxidative pentose phosphate pathway controls vascular mural cell coverage by regulating extracellular matrix composition. Nature metabolism. 4:123-140

Hevia, C.F., Engel-Pizcueta, C., Udina, F., Pujades, C. (2022) The neurogenic fate of the hindbrain boundaries relies on Notch3-dependent asymmetric cell divisions. Cell Reports. 39:110915

Huang, C.X., Wang, Z., Cheng, J., Zhu, Z., Guan, N.N., Song, J. (2022) De novo establishment of circuit modules restores locomotion after spinal cord injury in adult zebrafish. Cell Reports. 41:111535

Jin, M., Zhang, H., Xu, B., Li, Y., Qin, H., Yu, S., He, J. (2022) Jag2b-Notch3/1b-mediated neuron-to-glia crosstalk controls retinal gliogenesis. EMBO reports. 23(10):e54922

Kappel, J.M., Förster, D., Slangewal, K., Shainer, I., Svara, F., Donovan, J.C., Sherman, S., Januszewski, M., Baier, H., Larsch, J. (2022) Visual recognition of social signals by a tectothalamic neural circuit. Nature. 608(7921):146-152

Kotini, M.P., van der Stoel, M.M., Yin, J., Han, M.K., Kirchmaier, B., de Rooij, J., Affolter, M., Huveneers, S., Belting, H.G. (2022) Vinculin controls endothelial cell junction dynamics during vascular lumen formation. Cell Reports. 39:110658

Lee, D.S., Schrader, A., Bell, E., Warchol, M.E., Sheets, L. (2022) Evaluation of Cisplatin-Induced Pathology in the Larval Zebrafish Lateral Line. International Journal of Molecular Sciences. 23(22):

Lou, L., Yu, T., Dai, Y., Zhao, S., Feng, S., Xu, J., Wen, Z. (2022) Mafba and Mafbb regulate microglial colonization of zebrafish brain via controlling chemotaxis receptor expression. Proceedings of the National Academy of Sciences of the United States of America. 119:e2203273119

Mackowetzky, K., Dicipulo, R., Fox, S.C., Philibert, D.A., Todesco, H., Doshi, J.D., Kawakami, K., Tierney, K., Waskiewicz, A.J. (2022) Retinoic Acid Signaling Regulates Late Stages of Semicircular Canal Morphogenesis and Otolith Maintenance in the Zebrafish Inner Ear. Developmental Dynamics : an official publication of the American Association of Anatomists. 251(11):1798-1815

Martin, A., Babbitt, A., Pickens, A.G., Pickett, B.E., Hill, J.T., Suli, A. (2022) Single-Cell RNA Sequencing Characterizes the Molecular Heterogeneity of the Larval Zebrafish Optic Tectum. Frontiers in molecular neuroscience. 15:818007

Miyamoto, K., Kawakami, K., Tamura, K., Abe, G. (2022) Developmental independence of median fins from the larval fin fold revises their evolutionary origin. Scientific Reports. 12:7521

Nishimura, Y., Ishii, T., Ando, K., Yuge, S., Nakajima, H., Zhou, W., Mochizuki, N., Fukuhara, S. (2022) Blood Flow Regulates Glomerular Capillary Formation in Zebrafish Pronephros. Kidney360. 3:700-713

Pallucchi, I., Bertuzzi, M., Michel, J.C., Miller, A.C., El Manira, A. (2022) Transformation of an early-established motor circuit during maturation in zebrafish. Cell Reports. 39:110654

Peng, D., Ando, K., Hußmann, M., Gloger, M., Skoczylas, R., Mochizuki, N., Betsholtz, C., Fukuhara, S., Schulte-Merker, S., Lawson, N.D., Koltowska, K. (2022) Proper migration of lymphatic endothelial cells requires survival and guidance cues from arterial mural cells. eLIFE. 11

Qi, J., Rittershaus, A., Priya, R., Mansingh, S., Stainier, D.Y.R., Helker, C.S.M. (2022) Apelin signaling dependent endocardial protrusions promote cardiac trabeculation in zebrafish. eLIFE. 11:

Ryu, J.R., Ahuja, S., Arnold, C.R., Potts, K.G., Mishra, A., Yang, Q., Sargurupremraj, M., Mahoney, D.J., Seshadri, S., Debette, S., Childs, S.J. (2022) Stroke-associated intergenic variants modulate a human FOXF2 transcriptional enhancer. Proceedings of the National Academy of Sciences of the United States of America. 119:e2121333119

Sipka, T., Park, S.A., Ozbilgic, R., Balas, L., Durand, T., Mikula, K., Lutfalla, G., Nguyen-Chi, M. (2022) Macrophages undergo a behavioural switch during wound healing in zebrafish. Free radical biology & medicine. 192:200-212

Tallafuss, A., Stednitz, S.J., Voeun, M., Levichev, A., Larsch, J., Eisen, J., Washbourne, P. (2022) Egr1 is necessary for forebrain dopaminergic signaling during social behavior. eNeuro. 9(2):

Tanimoto, M., Watakabe, I., Higashijima, S.I. (2022) Tiltable objective microscope visualizes selectivity for head motion direction and dynamics in zebrafish vestibular system. Nature communications. 13:76227622

Venditti, M., Pedalino, C., Rosello, M., Fasano, G., Serafini, M., Revenu, C., Del Bene, F., Tartaglia, M., Lauri, A. (2022) A minimally invasive fin scratching protocol for fast genotyping and early selection of zebrafish embryos. Scientific Reports. 12:2259722597

Wada, Y., Tsukatani, H., Kuroda, C., Miyazaki, Y., Otoshi, M., Kobayashi, I. (2022) Jagged 2b induces intercellular signaling within somites to establish hematopoietic stem cell fate in zebrafish. Development (Cambridge, England). 149(7)

Wee, C.L., Song, E., Nikitchenko, M., Herrera, K.J., Wong, S., Engert, F., Kunes, S. (2022) Social isolation modulates appetite and avoidance behavior via a common oxytocinergic circuit in larval zebrafish. Nature communications. 13:2573

Yang, E., Zwart, M.F., James, B., Rubinov, M., Wei, Z., Narayan, S., Vladimirov, N., Mensh, B.D., Fitzgerald, J.E., Ahrens, M.B. (2022) A brainstem integrator for self-location memory and positional homeostasis in zebrafish. Cell. 185:50115027.e205011-5027.e20

Basnakova, A., Cheng, R.K., Chia, J.S.M., D'Agostino, G., Suryadi, ., Tan, G.J.H., Langley, S.R., Jesuthasan, S. (2021) The habenula clock influences response to a stressor. Neurobiology of stress. 15:100403

Brown, E.A., Kawakami, K., Kucenas, S. (2021) A novel gene trap line for visualization and manipulation of erbb3b⁺ neural crest and glial cells in zebrafish. Developmental Biology. 482:114-123

Carretero-Rodriguez, L., Guðjónsdóttir, R., Poparic, I., Reilly, M.L., Chol, M., Bianco, I.H., Chiapello, M., Feret, R., Deery, M.J., Guthrie, S. (2021) The Rac-GAP alpha2-chimaerin signals via CRMP2 and stathmins in the development of the ocular motor system. The Journal of neuroscience : the official journal of the Society for Neuroscience. 41(31):6652-6672

Cooper, R., David, A., Lange, A., Tyler, C.R. (2021) Health Effects and Life Stage Sensitivities in Zebrafish Exposed to an Estrogenic Wastewater Treatment Works Effluent. Frontiers in endocrinology. 12:666656

Derrick, C.J., Sánchez-Posada, J., Hussein, F., Tessadori, F., Pollitt, E.J.G., Savage, A.M., Wilkinson, R.N., Chico, T.J., van Eeden, F.J., Bakkers, J., Noël, E.S. (2021) Asymmetric Hapln1a drives regionalised cardiac ECM expansion and promotes heart morphogenesis in zebrafish development. Cardiovascular research. 118(1):226-240

Fukui, H., Chow, R.W., Xie, J., Foo, Y.Y., Yap, C.H., Minc, N., Mochizuki, N., Vermot, J. (2021) Bioelectric signaling and the control of cardiac cell identity in response to mechanical forces. Science (New York, N.Y.). 374:351-354

Golan, M., Boulanger-Weill, J., Pinot, A., Fontanaud, P., Faucherre, A., Gajbhiye, D.S., Hollander-Cohen, L., Fiordelisio-Coll, T., Martin, A.O., Mollard, P. (2021) Synaptic communication mediates the assembly of a self-organizing circuit that controls reproduction. Science advances. 7(8):

Guilbeault, N.C., Guerguiev, J., Martin, M., Tate, I., Thiele, T.R. (2021) BonZeb: open-source, modular software tools for high-resolution zebrafish tracking and analysis. Scientific Reports. 11:8148

Heller, I.S., Guenther, C.A., Meireles, A.M., Talbot, W.S., Kingsley, D.M. (2021) Characterization of mouse Bmp5 regulatory injury element in zebrafish wound models. Bone. 155:116263

Hoijman, E., Häkkinen, H.M., Tolosa-Ramon, Q., Jiménez-Delgado, S., Wyatt, C., Miret-Cuesta, M., Irimia, M., Callan-Jones, A., Wieser, S., Ruprecht, V. (2021) Cooperative epithelial phagocytosis enables error correction in the early embryo. Nature. 590(7847):618-623

Iglesias González, A.B., Jakobsson, J.E.T., Vieillard, J., Lagerström, M.C., Kullander, K., Boije, H. (2021) Single Cell Transcriptomic Analysis of Spinal Dmrt3 Neurons in Zebrafish and Mouse Identifies Distinct Subtypes and Reveal Novel Subpopulations Within the dI6 Domain. Frontiers in Cellular Neuroscience. 15:781197

Itoh, T., Inoue, S., Sun, X., Kusuda, R., Hibi, M., Shimizu, T. (2021) Cfdp1 controls the cell cycle and neural differentiation in the zebrafish cerebellum and retina. Developmental Dynamics : an official publication of the American Association of Anatomists. 250(11):1618-1633

Kamel, S.M., Koopman, C.D., Kruse, F., Willekers, S., Chocron, S., Bakkers, J. (2021) A Heterozygous Mutation in Cardiac Troponin T Promotes Ca²⁺ Dysregulation and Adult Cardiomyopathy in Zebrafish. Journal of cardiovascular development and disease. 8(4):

Kler, S., Ma, M., Narayan, S., Ahrens, M.B., Pan, Y.A. (2021) Cre-Dependent Anterograde Transsynaptic Labeling and Functional Imaging in Zebrafish Using VSV With Reduced Cytotoxicity. Frontiers in Neuroanatomy. 15:758350

Koyama, W., Hosomi, R., Matsuda, K., Kawakami, K., Hibi, M., Shimizu, T. (2021) Involvement of cerebellar neural circuits in active avoidance conditioning in zebrafish. eNeuro. 8(3):

Lee, M., Betz, C., Yin, J., Paatero, I., Schellinx, N., Carte, A.N., Wilson, C.W., Ye, W., Affolter, M., Belting, H.G. (2021) Control of dynamic cell behaviors during angiogenesis and anastomosis by Rasip1. Development (Cambridge, England). 148(15):

Mauri, C., van Impel, A., Mackay, E.W., Schulte-Merker, S. (2021) The adaptor protein Grb2b is an essential modulator for lympho-venous sprout formation in the zebrafish trunk. Angiogenesis. 24(2):345-362

Montgomery, J.E., Wahlstrom-Helgren, S., Vanpelt, K.T., Masino, M.A. (2021) Repetitive optogenetic stimulation of glutamatergic neurons: An alternative to NMDA treatment for generating locomotor activity in spinalized zebrafish larvae. Physiological Reports. 9:e14774

Paolini, A., Fontana, F., Pham, V.C., Rödel, C.J., Abdelilah-Seyfried, S. (2021) Mechanosensitive Notch-Dll4 and Klf2-Wnt9 signaling pathways intersect in guiding valvulogenesis in zebrafish. Cell Reports. 37:109782

Quillien, A., Gilbert, G., Boulet, M., Ethuin, S., Waltzer, L., Vandel, L. (2021) Prmt5 promotes vascular morphogenesis independently of its methyltransferase activity. PLoS Genetics. 17:e1009641

Shih, Y.H., Portman, D., Idrizi, F., Grosse, A., Lawson, N.D. (2021) Integrated molecular analysis identifies a conserved pericyte gene signature in zebrafish. Development (Cambridge, England). 148(23):

Tessadori, F., Tsingos, E., Colizzi, E.S., Kruse, F., van den Brink, S.C., van den Boogaard, M., Christoffels, V.M., Merks, R.M., Bakkers, J. (2021) Twisting of the zebrafish heart tube during cardiac looping is a tbx5-dependent and tissue-intrinsic process. eLIFE. 10:

van Loon, A.P., Erofeev, I.S., Goryachev, A.B., Sagasti, A. (2021) Stochastic contraction of myosin minifilaments drives evolution of microridge protrusion patterns in epithelial cells. Molecular biology of the cell. 32(16):1501-1513

Warchol, M.E., Schrader, A., Sheets, L. (2021) Macrophages Respond Rapidly to Ototoxic Injury of Lateral Line Hair Cells but Are Not Required for Hair Cell Regeneration. Frontiers in Cellular Neuroscience. 14:613246

Xie, M.E., Adam, Y., Fan, L.Z., Böhm, U.L., Kinsella, I., Zhou, D., Rozsa, M., Singh, A., Svoboda, K., Paninski, L., Cohen, A.E. (2021) High-fidelity estimates of spikes and subthreshold waveforms from 1-photon voltage imaging in vivo. Cell Reports. 35:108954

Zaupa, M., Naini, S.M.A., Younes, M.A., Bullier, E., Duboué, E.R., Le Corronc, H., Soula, H., Wolf, S., Candelier, R., Legendre, P., Halpern, M.E., Mangin, J.M., Hong, E. (2021) Trans-inhibition of axon terminals underlies competition in the habenulo-interpeduncular pathway. Current biology : CB. 31(21):4762-4772.e5

Andrés-Delgado, L., Galardi-Castilla, M., Münch, J., Peralta, M., Ernst, A., González-Rosa, J.M., Tessadori, F., Santamaría, L., Bakkers, J., Vermot, J., de la Pompa, J.L., Mercader, N. (2020) Notch and Bmp signaling pathways act coordinately during the formation of the proepicardium. Developmental Dynamics : an official publication of the American Association of Anatomists. 249(12):1455-1469

Bagwell, J., Norman, J., Ellis, K.L., Peskin, B., Hwang, J., Ge, X., Nguyen, S., McMenamin, S.K., Stainier, D.Y., Bagnat, M. (2020) Notochord vacuoles absorb compressive bone growth during zebrafish spine formation. eLIFE. 9:

Barker, A.J., Helmbrecht, T.O., Grob, A.A., Baier, H. (2020) Functional, molecular and morphological heterogeneity of superficial interneurons in the larval zebrafish tectum. The Journal of comparative neurology. 529(9):2159-2175

Bloch, S., Hagio, H., Thomas, M., Heuzé, A., Hermel, J.M., Lasserre, E., Colin, I., Saka, K., Affaticati, P., Jenett, A., Kawakami, K., Yamamoto, N., Yamamoto, K. (2020) Non-thalamic origin of zebrafish sensory nuclei implies convergent evolution of visual pathways in amniotes and teleosts. eLIFE. 9:

Demy, D.L., Carrère, M., Noche, R., Tauzin, M., Le Bris, M., Baek, C., Leshchiner, I., Goessling, W., Herbomel, P. (2020) The cationic amino acid exporter Slc7a7 is induced and vital in tissue macrophages with sustained efferocytic activity. Journal of Cell Science. 133(20):

Fernandes, A.M., Mearns, D.S., Donovan, J.C., Larsch, J., Helmbrecht, T.O., Kölsch, Y., Laurell, E., Kawakami, K., Dal Maschio, M., Baier, H. (2020) Neural circuitry for stimulus selection in the zebrafish visual system. Neuron. 109(5):805-822.e6

Fujii, K., Nakajo, K., Egashira, Y., Yamamoto, Y., Kitada, K., Taniguchi, K., Kawai, M., Tomiyama, H., Kawakami, K., Uchiyama, K., Ono, F. (2020) Gastrointestinal Neurons Expressing HCN4 Regulate Retrograde Peristalsis. Cell Reports. 30:2879-2888.e3

Gunawan, F., Gentile, A., Gauvrit, S., Stainier, D., Bensimon-Brito, A. (2020) Nfatc1 Promotes Interstitial Cell Formation During Cardiac Valve Development in Zebrafish. Circulation research. 126(8):968-984

Harmon, T.C., McLean, D.L., Raman, I.M. (2020) Integration of swimming-related synaptic excitation and inhibition by olig2⁺ eurydendroid neurons in larval zebrafish cerebellum. The Journal of neuroscience : the official journal of the Society for Neuroscience. 40(15):3063-3074

Huang, K.H., Rupprecht, P., Frank, T., Kawakami, K., Bouwmeester, T., Friedrich, R.W. (2020) A virtual reality system to analyze neural activity and behavior in adult zebrafish. Nature Methods. 17(3):343-351

Iwasaki, M., Yokoi, H., Suzuki, T., Kawakami, K., Wada, H. (2020) Development of the anterior lateral line system through local tissue-tissue interactions in the zebrafish head. Developmental Dynamics : an official publication of the American Association of Anatomists. 249(12):1440-1454

Kasper, D.M., Hintzen, J., Wu, Y., Ghersi, J.J., Mandl, H.K., Salinas, K.E., Armero, W., He, Z., Sheng, Y., Xie, Y., Heindel, D.W., Park, E.J., Sessa, W.C., Mahal, L.K., Lebrilla, C., Hirschi, K.K., Nicoli, S. (2020) The N-glycome regulates the endothelial-to-hematopoietic transition. Science (New York, N.Y.). 370:1186-1191

Kennard, A.S., Theriot, J.A. (2020) Osmolarity-independent electrical cues guide rapid response to injury in zebrafish epidermis. eLIFE. 9:

Kioka, H., Kato, H., Fujita, T., Asano, Y., Shintani, Y., Yamazaki, S., Tsukamoto, O., Imamura, H., Kogo, M., Kitakaze, M., Sakata, Y., Takashima, S. (2020) In vivo real-time ATP imaging in zebrafish hearts reveals G0s2 induces ischemic tolerance. FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 34(2):2041-2054

Klems, A., van Rijssel, J., Ramms, A.S., Wild, R., Hammer, J., Merkel, M., Derenbach, L., Préau, L., Hinkel, R., Suarez-Martinez, I., Schulte-Merker, S., Vidal, R., Sauer, S., Kivelä, R., Alitalo, K., Kupatt, C., van Buul, J.D., le Noble, F. (2020) The GEF Trio controls endothelial cell size and arterial remodeling downstream of Vegf signaling in both zebrafish and cell models. Nature communications. 11:5319

Kondrychyn, I., Kelly, D.J., Carretero, N.T., Nomori, A., Kato, K., Chong, J., Nakajima, H., Okuda, S., Mochizuki, N., Phng, L.K. (2020) Marcksl1 modulates endothelial cell mechanoresponse to haemodynamic forces to control blood vessel shape and size. Nature communications. 11:5476

Kula-Alwar, D., Marber, M.S., Hughes, S.M., Hinits, Y. (2020) Mef2c factors are required for early but not late addition of cardiomyocytes to the ventricle. Developmental Biology. 470:95-107

Lim, C.H., Kaur, P., Teo, E., Lam, V.Y.M., Zhu, F., Kibat, C., Gruber, J., Mathuru, A.S., Tolwinski, N.S. (2020) Application of optogenetic Amyloid-β distinguishes between metabolic and physical damages in neurodegeneration. eLIFE. 9:

Lleras-Forero, L., Newham, E., Teufel, S., Kawakami, K., Hartmann, C., Hammond, C.L., Knight, R.D., Schulte-Merker, S. (2020) Muscle defects due to perturbed somite segmentation contribute to late adult scoliosis. Aging. 12(18):18603-18621

Mizoguchi, T., Fukada, M., Iihama, M., Song, X., Fukagawa, S., Kuwabara, S., Omaru, S., Higashijima, S.I., Itoh, M. (2020) Transient activation of the Notch-her15.1 axis plays an important role in the maturation of V2b interneurons. Development (Cambridge, England). 147(16):

Nelson, J.C., Witze, E., Ma, Z., Ciocco, F., Frerotte, A., Randlett, O., Foskett, J.K., Granato, M. (2020) Acute Regulation of Habituation Learning via Posttranslational Palmitoylation. Current biology : CB. 30(14):2729-2738.e4

Oldfield, C.S., Grossrubatscher, I., Chávez, M., Hoagland, A., Huth, A.R., Carroll, E.C., Prendergast, A., Qu, T., Gallant, J.L., Wyart, C., Isacoff, E.Y. (2020) Experience, circuit dynamics and forebrain recruitment in larval zebrafish prey capture. eLIFE. 9:

Rajan, A.M., Ma, R.C., Kocha, K.M., Zhang, D.J., Huang, P. (2020) Dual function of perivascular fibroblasts in vascular stabilization in zebrafish. PLoS Genetics. 16:e1008800

Reinoß, P., Ciglieri, E., Minére, M., Bremser, S., Klein, A., Löhr, H., Fuller, P.M., Büschges, A., Kloppenburg, P., Fenselau, H., Hammerschmidt, M. (2020) Hypothalamic Pomc Neurons Innervate the Spinal Cord and Modulate the Excitability of Premotor Circuits. Current biology : CB. 30(23):4579-4593.e7

Taberner, L., Bañón, A., Alsina, B. (2020) Sensory Neuroblast Quiescence Depends on Vascular Cytoneme Contacts and Sensory Neuronal Differentiation Requires Initiation of Blood Flow. Cell Reports. 32:107903

Trivellin, G., Tirosh, A., Hernández-Ramírez, L.C., Gupta, T., Tsai-Morris, C.H., Faucz, F.R., Burgess, H.A., Feldman, B., Stratakis, C.A. (2020) The X-linked acrogigantism-associated gene gpr101 is a regulator of early embryonic development and growth in zebrafish. Molecular and Cellular Endocrinology. 520:111091

Uemura, Y., Kato, K., Kawakami, K., Kimura, Y., Oda, Y., Higashijima, S.I. (2020) Neuronal circuits that control rhythmic pectoral fin movements in zebrafish. The Journal of neuroscience : the official journal of the Society for Neuroscience. 40(35):6678-6690

van Loon, A.P., Erofeev, I.S., Maryshev, I.V., Goryachev, A.B., Sagasti, A. (2020) Cortical contraction drives the 3D patterning of epithelial cell surfaces. The Journal of cell biology. 219(3):

Wen, H., Eckenstein, K., Weihrauch, V., Stigloher, C., Brehm, P. (2020) Primary and secondary motoneurons use different calcium channel types to control escape and swimming behaviors in zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 117(42):26429-26437

Xie, W., Jiao, B., Bai, Q., Ilin, V.A., Sun, M., Burton, C.E., Kolodieznyi, D., Calderon, M.J., Stolz, D.B., Opresko, P.L., St Croix, C.M., Watkins, S., Van Houten, B., Bruchez, M.P., Burton, E.A. (2020) Chemoptogenetic ablation of neuronal mitochondria in vivo with spatiotemporal precision and controllable severity. eLIFE. 9:

Yoshida, N., Domart, M.C., Peddie, C.J., Yakimovich, A., Mazon-Moya, M.J., Hawkins, T.A., Collinson, L., Mercer, J., Frickel, E.M., Mostowy, S. (2020) The zebrafish as a novel model for the in vivo study of Toxoplasma gondii replication and interaction with macrophages. Disease models & mechanisms. 13(7):

Admati, I., Wasserman-Bartov, T., Tovin, A., Rozenblat, R., Blitz, E., Zada, D., Lerer-Goldshtein, T., Appelbaum, L. (2019) Neural alterations and hyperactivity of the hypothalamic-pituitary-thyroid axis in Oatp1c1-deficiency. Thyroid : official journal of the American Thyroid Association. 30(1):161-174

Ali, Z., Mukwaya, A., Biesemeier, A., Ntzouni, M., Ramsköld, D., Giatrellis, S., Mammadzada, P., Cao, R., Lennikov, A., Marass, M., Gerri, C., Hildesjö, C., Taylor, M., Deng, Q., Peebo, B., Del Peso, L., Kvanta, A., Sandberg, R., Schraermeyer, U., Andre, H., Steffensen, J.F., Lagali, N., Cao, Y., Kele, J., Jensen, L.D. (2019) Intussusceptive Vascular Remodeling Precedes Pathological Neovascularization. Arteriosclerosis, Thrombosis, and Vascular Biology. 39:1402-1418

Andersen, S.S.L. (2019) Real time large scale in vivo observations reveal intrinsic synchrony, plasticity and growth cone dynamics of midline crossing axons at the ventral floor plate of the zebrafish spinal cord. Journal of Integrative Neuroscience. 18:351-368

Atkins, M., Gasmi, L., Bercier, V., Revenu, C., Del Bene, F., Hazan, J., Fassier, C. (2019) FIGNL1 associates with KIF1Bβ and BICD1 to restrict dynein transport velocity during axon navigation. The Journal of cell biology. 218(10):3290-3306

Bensimon-Brito, A., Ramkumar, S., Boezio, G.L.M., Guenther, S., Kuenne, C., Helker, C.S.M., Sánchez-Iranzo, H., Iloska, D., Piesker, J., Pullamsetti, S., Mercader, N., Beis, D., Stainier, D.Y.R. (2019) TGF-β Signaling Promotes Tissue Formation during Cardiac Valve Regeneration in Adult Zebrafish. Developmental Cell. 52(1):9-20.e7

Carretero-Ortega, J., Chhangawala, Z., Hunt, S., Narvaez, C., Menéndez-González, J., Gay, C.M., Zygmunt, T., Li, X., Torres-Vázquez, J. (2019) GIPC proteins negatively modulate Plexind1 signaling during vascular development. eLIFE. 8:

Chia, J.S.M., Wall, E.S., Wee, C.L., Rowland, T.A.J., Cheng, R.K., Cheow, K., Guillemin, K., Jesuthasan, S. (2019) Bacteria evoke alarm behaviour in zebrafish. Nature communications. 10:3831

Demal, T.J., Heise, M., Reiz, B., Dogra, D., Brænne, I., Reichenspurner, H., Männer, J., Aherrahrou, Z., Schunkert, H., Erdmann, J., Abdelilah-Seyfried, S. (2019) A familial congenital heart disease with a possible multigenic origin involving a mutation in BMPR1A. Scientific Reports. 9:2959

Ehrlich, D.E., Schoppik, D. (2019) A primal role for the vestibular sense in the development of coordinated locomotion. eLIFE. 8:

Grainger, S., Nguyen, N., Richter, J., Setayesh, J., Lonquich, B., Oon, C.H., Wozniak, J.M., Barahona, R., Kamei, C.N., Houston, J., Carrillo-Terrazas, M., Drummond, I.A., Gonzalez, D., Willert, K., Traver, D. (2019) EGFR is required for Wnt9a-Fzd9b signalling specificity in haematopoietic stem cells. Nature cell biology. 21(6):721-730

Hamada, H., Uemoto, T., Tanaka, Y., Honda, Y., Kitajima, K., Umeda, T., Kawakami, A., Shinya, M., Kawakami, K., Tamura, K., Abe, G. (2019) Pattern of fin rays along the antero-posterior axis based on their connection to distal radials. Zoological letters. 5:30

Jiang, N., Rasmussen, J.P., Clanton, J.A., Rosenberg, M.F., Luedke, K.P., Cronan, M.R., Parker, E.D., Kim, H.J., Vaughan, J.C., Sagasti, A., Parrish, J.Z. (2019) A conserved morphogenetic mechanism for epidermal ensheathment of nociceptive sensory neurites. eLIFE. 8:

Kimura, Y., Higashijima, S.I. (2019) Regulation of locomotor speed and selection of active sets of neurons by V1 neurons. Nature communications. 10:2268

Kobayashi, I., Kobayashi-Sun, J., Hirakawa, Y., Ouchi, M., Yasuda, K., Kamei, H., Fukuhara, S., Yamaguchi, M. (2019) Dual role of Jam3b in early hematopoietic and vascular development. Development (Cambridge, England). 147(1):

Leung, L.C., Wang, G.X., Madelaine, R., Skariah, G., Kawakami, K., Deisseroth, K., Urban, A.E., Mourrain, P. (2019) Neural signatures of sleep in zebrafish. Nature. 571:198-204

Menelaou, E., McLean, D.L. (2019) Hierarchical control of locomotion by distinct types of spinal V2a interneurons in zebrafish. Nature communications. 10:4197

Mullapudi, S.T., Boezio, G.L.M., Rossi, A., Marass, M., Matsuoka, R.L., Matsuda, H., Helker, C.S.M., Yang, Y.H.C., Stainier, D.Y.R. (2019) Disruption of the pancreatic vasculature in zebrafish affects islet architecture and function. Development (Cambridge, England). 146(21):

Nimura, T., Itoh, T., Hagio, H., Hayashi, T., Di Donato, V., Takeuchi, M., Itoh, T., Inoguchi, F., Sato, Y., Yamamoto, N., Katsuyama, Y., Del Bene, F., Shimizu, T., Hibi, M. (2019) Role of Reelin in cell positioning in the cerebellum and the cerebellum-like structure in zebrafish. Developmental Biology. 455(2):393-408

Pazhakh, V., Ellett, F., Croker, B.A., O'Donnell, J.A., Pase, L., Schulze, K.E., Greulich, R.S., Gupta, A., Reyes-Aldasoro, C.C., Andrianopoulos, A., Lieschke, G.J. (2019) β-glucan-dependent shuttling of conidia from neutrophils to macrophages occurs during fungal infection establishment. PLoS Biology. 17:e3000113

Petel Légaré, V., Harji, Z.A., Rampal, C.J., Allard-Chamard, X., Rodríguez, E.C., Armstrong, G.A.B. (2019) Augmentation of spinal cord glutamatergic synaptic currents in zebrafish primary motoneurons expressing mutant human TARDBP (TDP-43). Scientific Reports. 9:9122

Pérez-Rius, C., Castellanos, A., Gaitán-Peñas, H., Navarro, A., Artuch, R., Barrallo-Gimeno, A., Estévez, R. (2019) Role of zebrafish ClC-K/barttin channels in apical kidney chloride reabsorption. The Journal of physiology. 597(15):3969-3983

Rödel, C.J., Otten, C., Donat, S., Lourenco, M., Fischer, D., Kuropka, B., Paolini, A., Freund, C., Abdelilah-Seyfried, S. (2019) Blood Flow Suppresses Vascular Anomalies in a Zebrafish Model of Cerebral Cavernous Malformations. Circulation research. 125(10):e43-e54

Shibata-Germanos, S., Goodman, J.R., Grieg, A., Trivedi, C.A., Benson, B.C., Foti, S.C., Faro, A., Castellan, R.F.P., Correra, R.M., Barber, M., Ruhrberg, C., Weller, R.O., Lashley, T., Iliff, J.J., Hawkins, T.A., Rihel, J. (2019) Structural and functional conservation of non-lumenized lymphatic endothelial cells in the mammalian leptomeninges. Acta Neuropathologica. 139(2):383-401

Tabor, K.M., Marquart, G.D., Hurt, C., Smith, T.S., Geoca, A.K., Bhandiwad, A.A., Subedi, A., Sinclair, J.L., Rose, H.M., Polys, N.F., Burgess, H.A. (2019) Brain-wide cellular resolution imaging of Cre transgenic zebrafish lines for functional circuit-mapping. eLIFE. 8

Tyrkalska, S.D., Pérez-Oliva, A.B., Rodríguez-Ruiz, L., Martínez-Morcillo, F.J., Alcaraz-Pérez, F., Martínez-Navarro, F.J., Lachaud, C., Ahmed, N., Schroeder, T., Pardo-Sánchez, I., Candel, S., López-Muñoz, A., Choudhuri, A., Rossmann, M.P., Zon, L.I., Cayuela, M.L., García-Moreno, D., Mulero, V. (2019) Inflammasome Regulates Hematopoiesis through Cleavage of the Master Erythroid Transcription Factor GATA1. Immunity. 51(1):50-63.e5

Voltes, A., Hevia, C.F., Engel, C., Dingare, C., Calzolari, S., Terriente, J., Norden, C., Lecaudey, V., Pujades, C. (2019) Yap/Taz-TEAD activity links mechanical cues to progenitor cell behavior during zebrafish hindbrain segmentation. Development (Cambridge, England). 146(14):

Wee, C.L., Song, E.Y., Johnson, R.E., Ailani, D., Randlett, O., Kim, J.Y., Nikitchenko, M., Bahl, A., Yang, C.T., Ahrens, M.B., Kawakami, K., Engert, F., Kunes, S. (2019) A bidirectional network for appetite control in larval zebrafish. eLIFE. 8:

Yamada, N., Asano, Y., Fujita, M., Yamazaki, S., Inanobe, A., Matsuura, N., Kobayashi, H., Ohno, S., Ebana, Y., Tsukamoto, O., Ishino, S., Takuwa, A., Kioka, H., Yamashita, T., Hashimoto, N., Zankov, D.P., Shimizu, A., Asakura, M., Asanuma, H., Kato, H., Nishida, Y., Miyashita, Y., Shinomiya, H., Naiki, N., Hayashi, K., Makiyama, T., Ogita, H., Miura, K., Ueshima, H., Komuro, I., Yamagishi, M., Horie, M., Kawakami, K., Furukawa, T., Koizumi, A., Kurachi, Y., Sakata, Y., Minamino, T., Kitakaze, M., Takashima, S. (2019) Mutant KCNJ3 and KCNJ5 Potassium Channels as Novel Molecular Targets in Bradyarrhythmias and Atrial Fibrillation. Circulation. 139(18):2157-2169

Zhang, Y., Ouyang, J., Qie, J., Zhang, G., Liu, L., Yang, P. (2019) Optimization of the Gal4/UAS transgenic tools in zebrafish. Applied Microbiology and Biotechnology. 103(4):1789-1799

Asakawa, K., Kawakami, K. (2018) Protocadherin-Mediated Cell Repulsion Controls the Central Topography and Efferent Projections of the Abducens Nucleus. Cell Reports. 24:1562-1572

Britto, D.D., Wyroba, B., Chen, W., Lockwood, R.A., Tran, K.B., Shepherd, P.R., Hall, C.J., Crosier, K.E., Crosier, P.S., Astin, J.W. (2018) Macrophages enhance Vegfa-driven angiogenesis in an embryonic zebrafish tumour xenograft model. Disease models & mechanisms. 11(12):

Burkhard, S.B., Bakkers, J. (2018) Spatially resolved RNA-sequencing of the embryonic heart identifies a role for Wnt/β-catenin signaling in autonomic control of heart rate. eLIFE. 7

Dow, E., Jacobo, A., Hossain, S., Siletti, K., Hudspeth, A.J. (2018) Connectomics of the zebrafish's lateral-line neuromast reveals wiring and miswiring in a simple microcircuit. eLIFE. 7

Enya, S., Kawakami, K., Suzuki, Y., Kawaoka, S. (2018) A novel zebrafish intestinal tumor model reveals a role for cyp7a1-dependent tumor-liver crosstalk in causing adverse effects on the host.. Disease models & mechanisms. 11(8)

Gawdzik, J.C., Yue, M.S., Martin, N.R., Elemans, L.M.H., Lanham, K.A., Heideman, W., Rezendes, R., Baker, T.R., Taylor, M.R., Plavicki, J.S. (2018) sox9b is required in cardiomyocytes for cardiac morphogenesis and function. Scientific Reports. 8:13906

Green, J.M., Lange, A., Scott, A., Trznadel, M., Wai, H.A., Takesono, A., Brown, A.R., Owen, S.F., Kudoh, T., Tyler, C.R. (2018) Early life exposure to ethinylestradiol enhances subsequent responses to environmental estrogens measured in a novel transgenic zebrafish. Scientific Reports. 8:2699

Gupta, T., Marquart, G.D., Horstick, E.J., Tabor, K.M., Pajevic, S., Burgess, H.A. (2018) Morphometric analysis and neuroanatomical mapping of the zebrafish brain. Methods (San Diego, Calif.). 150:49-62

Haesemeyer, M., Robson, D.N., Li, J.M., Schier, A.F., Engert, F. (2018) A Brain-wide Circuit Model of Heat-Evoked Swimming Behavior in Larval Zebrafish. Neuron. 98(4):817-831.e6

Hübner, K., Cabochette, P., Diéguez-Hurtado, R., Wiesner, C., Wakayama, Y., Grassme, K.S., Hubert, M., Guenther, S., Belting, H.G., Affolter, M., Adams, R.H., Vanhollebeke, B., Herzog, W. (2018) Wnt/β-catenin signaling regulates VE-cadherin-mediated anastomosis of brain capillaries by counteracting S1pr1 signaling. Nature communications. 9:4860

Inglesfield, S., Jasiulewicz, A., Hopwood, M., Tyrrell, J., Youlden, G., Mazon-Moya, M., Millington, O.R., Mostowy, S., Jabbari, S., Voelz, K. (2018) Robust Phagocyte Recruitment Controls the Opportunistic Fungal Pathogen Mucor circinelloides in Innate Granulomas In Vivo.. mBio. 9(2)

Jain, R.A., Wolman, M.A., Marsden, K.C., Nelson, J.C., Shoenhard, H., Echeverry, F.A., Szi, C., Bell, H., Skinner, J., Cobbs, E.N., Sawada, K., Zamora, A.D., Pereda, A.E., Granato, M. (2018) A Forward Genetic Screen in Zebrafish Identifies the G-Protein-Coupled Receptor CaSR as a Modulator of Sensorimotor Decision Making. Current biology : CB. 28(9):1357-1369.e5

Jiao, Z.F., Shang, C.F., Wang, Y.F., Yang, Z., Yang, C., Li, F.N., Xie, J.Z., Pan, J.W., Fu, L., Du, J.L. (2018) All-optical imaging and manipulation of whole-brain neuronal activities in behaving larval zebrafish. Biomedical Optics Express. 9:6154-6169

Kelu, J.J., Webb, S.E., Galione, A., Miller, A.L. (2018) TPC2-mediated Ca²⁺ signaling is required for the establishment of synchronized activity in developing zebrafish primary motor neurons.. Developmental Biology. 438(1):57-68

Koide, T., Yabuki, Y., Yoshihara, Y. (2018) Terminal Nerve GnRH3 Neurons Mediate Slow Avoidance of Carbon Dioxide in Larval Zebrafish. Cell Reports. 22:1115-1123

Lal, P., Tanabe, H., Suster, M.L., Ailani, D., Kotani, Y., Muto, A., Itoh, M., Iwasaki, M., Wada, H., Yaksi, E., Kawakami, K. (2018) Identification of a neuronal population in the telencephalon essential for fear conditioning in zebrafish. BMC Biology. 16:45

Leacock, S., Syed, P., James, V.M., Bode, A., Kawakami, K., Keramidas, A., Suster, M., Lynch, J.W., Harvey, R.J. (2018) Structure/Function Studies of the α4 Subunit Reveal Evolutionary Loss of a GlyR Subtype Involved in Startle and Escape Responses. Frontiers in molecular neuroscience. 11:23

Lopez-Baez, J.C., Simpson, D.J., LLeras Forero, L., Zeng, Z., Brunsdon, H., Salzano, A., Brombin, A., Wyatt, C., Rybski, W., Huitema, L.F.A., Dale, R.M., Kawakami, K., Englert, C., Chandra, T., Schulte-Merker, S., Hastie, N.D., Patton, E.E. (2018) Wilms Tumor 1b defines a wound-specific sheath cell subpopulation associated with notochord repair.. eLIFE. 7

Miyazawa, H., Okumura, K., Hiyoshi, K., Maruyama, K., Kakinuma, H., Amo, R., Okamoto, H., Yamasu, K., Tsuda, S. (2018) Optical interrogation of neuronal circuitry in zebrafish using genetically encoded voltage indicators. Scientific Reports. 8:6048

Muto, A., Kawakami, K. (2018) Ablation of a Neuronal Population Using a Two-photon Laser and Its Assessment Using Calcium Imaging and Behavioral Recording in Zebrafish Larvae. Journal of visualized experiments : JoVE. (136)

Paatero, I., Sauteur, L., Lee, M., Lagendijk, A.K., Heutschi, D., Wiesner, C., Guzmán, C., Bieli, D., Hogan, B.M., Affolter, M., Belting, H.G. (2018) Junction-based lamellipodia drive endothelial cell rearrangements in vivo via a VE-cadherin-F-actin based oscillatory cell-cell interaction. Nature communications. 9:3545

Phan, Q.T., Sipka, T., Gonzalez, C., Levraud, J.P., Lutfalla, G., Nguyen-Chi, M. (2018) Neutrophils use superoxide to control bacterial infection at a distance. PLoS pathogens. 14:e1007157

Schepis, A., Barker, A., Srinivasan, Y., Balouch, E., Zheng, Y., Lam, I., Clay, H., Hsiao, C.D., Coughlin, S.R. (2018) Protease signaling regulates apical cell extrusion, cell contacts, and proliferation in epithelia. The Journal of cell biology. 217(3):1097-1112

Shiraki, T., Kawakami, K. (2018) A tRNA-based multiplex sgRNA expression system in zebrafish and its application to generation of transgenic albino fish. Scientific Reports. 8:13366

Tabor, K.M., Smith, T.S., Brown, M., Bergeron, S.A., Briggman, K.L., Burgess, H.A. (2018) Presynaptic Inhibition Selectively Gates Auditory Transmission to the Brainstem Startle Circuit. Current biology : CB. 28(16):2527-2535.e8

Tsarouchas, T.M., Wehner, D., Cavone, L., Munir, T., Keatinge, M., Lambertus, M., Underhill, A., Barrett, T., Kassapis, E., Ogryzko, N., Feng, Y., van Ham, T.J., Becker, T., Becker, C.G. (2018) Dynamic control of proinflammatory cytokines Il-1β and Tnf-α by macrophages in zebrafish spinal cord regeneration. Nature communications. 9:4670

Vanlandewijck, M., He, L., Mäe, M.A., Andrae, J., Ando, K., Del Gaudio, F., Nahar, K., Lebouvier, T., Laviña, B., Gouveia, L., Sun, Y., Raschperger, E., Räsänen, M., Zarb, Y., Mochizuki, N., Keller, A., Lendahl, U., Betsholtz, C. (2018) A molecular atlas of cell types and zonation in the brain vasculature. Nature. 554:475480475-480

Weijts, B., Gutierrez, E., Saikin, S.K., Ablooglu, A.J., Traver, D., Groisman, A., Tkachenko, E. (2018) Blood flow-induced Notch activation and endothelial migration enable vascular remodeling in zebrafish embryos. Nature communications. 9:5314

Boselli, F., Steed, E., Freund, J.B., Vermot, J. (2017) Anisotropic shear stress patterns predict the orientation of convergent tissue movements in the embryonic heart. Development (Cambridge, England). 144:4322-4327

Cheng, R.K., Krishnan, S., Lin, Q., Kibat, C., Jesuthasan, S. (2017) Characterization of a thalamic nucleus mediating habenula responses to changes in ambient illumination. BMC Biology. 15:104

Chiba, A., Watanabe-Takano, H., Terai, K., Fukui, H., Miyazaki, T., Uemura, M., Hashimoto, H., Hibi, M., Fukuhara, S., Mochizuki, N. (2017) Osteocrin, a peptide secreted from the heart and other tissues, contributes to cranial osteogenesis and chondrogenesis in zebrafish. Development (Cambridge, England). 144(2):334-344

Demy, D.L., Tauzin, M., Lancino, M., le Cabec, V., Redd, M., Murayama, E., Maridonneau-Parini, I., Trede, N., Herbomel, P. (2017) Trim33 / Tif1-γ is essential for macrophage and neutrophil mobilisation to developmental or inflammatory cues. Journal of Cell Science. 130(17):2797-2807

Duboué, E.R., Hong, E., Eldred, K.C., Halpern, M.E. (2017) Left Habenular Activity Attenuates Fear Responses in Larval Zebrafish. Current biology : CB. 27(14):2154-2162.e3

Fukuda, R., Gunawan, F., Beisaw, A., Jimenez-Amilburu, V., Maischein, H.M., Kostin, S., Kawakami, K., Stainier, D.Y. (2017) Proteolysis regulates cardiomyocyte maturation and tissue integration. Nature communications. 8:14495

Hasan, S.S., Tsaryk, R., Lange, M., Wisniewski, L., Moore, J.C., Lawson, N.D., Wojciechowska, K., Schnittler, H., Siekmann, A.F. (2017) Endothelial Notch signalling limits angiogenesis via control of artery formation. Nature cell biology. 19(8):928-940

Knogler, L.D., Markov, D.A., Dragomir, E.I., Štih, V., Portugues, R. (2017) Sensorimotor Representations in Cerebellar Granule Cells in Larval Zebrafish Are Dense, Spatially Organized, and Non-temporally Patterned. Current biology : CB. 27(9):1288-1302

Lagendijk, A.K., Gomez, G.A., Baek, S., Hesselson, D., Hughes, W.E., Paterson, S., Conway, D.E., Belting, H.G., Affolter, M., Smith, K.A., Schwartz, M.A., Yap, A.S., Hogan, B.M. (2017) Live imaging molecular changes in junctional tension upon VE-cadherin in zebrafish. Nature communications. 8:1402

Matsuda, K., Yoshida, M., Kawakami, K., Hibi, M., Shimizu, T. (2017) Granule cells control recovery from classical conditioned fear responses in the zebrafish cerebellum. Scientific Reports. 7:11865

Mazon-Moya, M.J., Willis, A.R., Torraca, V., Boucontet, L., Shenoy, A.R., Colucci-Guyon, E., Mostowy, S. (2017) Septins restrict inflammation and protect zebrafish larvae from Shigella infection. PLoS pathogens. 13:e1006467

Mizoguchi, T., Ikeda, S., Watanabe, S., Sugawara, M., Itoh, M. (2017) Mib1 contributes to persistent directional cell migration by regulating the Ctnnd1-Rac1 pathway. Proceedings of the National Academy of Sciences of the United States of America. 114(44):E9280-E9289

Moreman, J., Lee, O., Trznadel, M., David, A., Kudoh, T., Tyler, C.R. (2017) Acute toxicity, teratogenic and estrogenic effects of Bisphenol A and its alternative replacements Bisphenol S, Bisphenol F and Bisphenol AF in zebrafish embryo-larvae. Environmental science & technology. 51(21):12796-12805

Nagasawa-Masuda, A., Terai, K. (2017) Yap/Taz transcriptional activity is essential for vascular regression via Ctgf expression and actin polymerization. PLoS One. 12:e0174633

Nakajima, H., Yamamoto, K., Agarwala, S., Terai, K., Fukui, H., Fukuhara, S., Ando, K., Miyazaki, T., Yokota, Y., Schmelzer, E., Belting, H.G., Affolter, M., Lecaudey, V., Mochizuki, N. (2017) Flow-Dependent Endothelial YAP Regulation Contributes to Vessel Maintenance. Developmental Cell. 40:523-536.e6

Ohki, Y., Wenninger-Weinzierl, A., Hruscha, A., Asakawa, K., Kawakami, K., Haass, C., Edbauer, D., Schmid, B. (2017) Glycine-alanine dipeptide repeat protein contributes to toxicity in a zebrafish model of C9orf72 associated neurodegeneration. Molecular neurodegeneration. 12:6

Reinig, S., Driever, W., Arrenberg, A.B. (2017) The Descending Diencephalic Dopamine System Is Tuned to Sensory Stimuli. Current biology : CB. 27(3):318-333

Sugden, W.W., Meissner, R., Aegerter-Wilmsen, T., Tsaryk, R., Leonard, E.V., Bussmann, J., Hamm, M.J., Herzog, W., Jin, Y., Jakobsson, L., Denz, C., Siekmann, A.F. (2017) Endoglin controls blood vessel diameter through endothelial cell shape changes in response to haemodynamic cues. Nature cell biology. 19(6):653-665

Taniguchi, A., Kimura, Y., Mori, I., Nonaka, S., Higashijima, S.I. (2017) Axially-confined in vivo single-cell labeling by primed conversion using blue and red lasers with conventional confocal microscopes. Development, growth & differentiation. 59(9):741-748

Venero Galanternik, M., Castranova, D., Gore, A.V., Blewett, N.H., Jung, H.M., Stratman, A.N., Kirby, M.R., Iben, J., Miller, M.F., Kawakami, K., Maraia, R.J., Weinstein, B.M. (2017) A novel perivascular cell population in the zebrafish brain. eLIFE. 6

Wehner, D., Tsarouchas, T.M., Michael, A., Haase, C., Weidinger, G., Reimer, M.M., Becker, T., Becker, C.G. (2017) Wnt signaling controls pro-regenerative Collagen XII in functional spinal cord regeneration in zebrafish. Nature communications. 8:126

Witzel, M., Petersheim, D., Fan, Y., Bahrami, E., Racek, T., Rohlfs, M., Puchałka, J., Mertes, C., Gagneur, J., Ziegenhain, C., Enard, W., Stray-Pedersen, A., Arkwright, P.D., Abboud, M.R., Pazhakh, V., Lieschke, G.J., Krawitz, P.M., Dahlhoff, M., Schneider, M.R., Wolf, E., Horny, H.P., Schmidt, H., Schäffer, A.A., Klein, C. (2017) Chromatin-remodeling factor SMARCD2 regulates transcriptional networks controlling differentiation of neutrophil granulocytes. Nature Genetics. 49(5):742-752

Zhang, B.B., Yao, Y.Y., Zhang, H.F., Kawakami, K., Du, J.L. (2017) Left Habenula Mediates Light-Preference Behavior in Zebrafish via an Asymmetrical Visual Pathway. Neuron. 93(4):914-928.e4

Antinucci, P., Suleyman, O., Monfries, C., Hindges, R. (2016) Neural Mechanisms Generating Orientation Selectivity in the Retina. Current biology : CB. 26(14):1802-15

Bostaille, N., Gauquier, A., Twyffels, L., Vanhollebeke, B. (2016) Molecular insights into Adgra2/Gpr124 and Reck intracellular trafficking. Biology Open. 5:1874-1881

Cheng, R.K., Krishnan, S., Jesuthasan, S. (2016) Activation and inhibition of tph2 serotonergic neurons operate in tandem to influence larval zebrafish preference for light over darkness. Scientific Reports. 6:20788

Filosa, A., Barker, A.J., Dal Maschio, M., Baier, H. (2016) Feeding State Modulates Behavioral Choice and Processing of Prey Stimuli in the Zebrafish Tectum. Neuron. 90(3):596-608

Green, J.M., Metz, J., Lee, O., Trznadel, M., Takesono, A., Brown, A.R., Owen, S.F., Kudoh, T., Tyler, C.R. (2016) High-Content and Semi-Automated Quantification of Responses to Estrogenic Chemicals Using a Novel Translucent Transgenic Zebrafish. Environmental science & technology. 50(12):6536-45

Josifova, D.J., Monroe, G.R., Tessadori, F., de Graaff, E., van der Zwaag, B., Mehta, S.G., Harakalova, M., Duran, K.J., Savelberg, S.M., Nijman, I.J., Jungbluth, H., Hoogenraad, C.C., Bakkers, J., Knoers, N.V., Firth, H.V., Beales, P.L., van Haaften, G., van Haelst, M.M. (2016) Heterozygous KIDINS220/ARMS nonsense variants cause spastic paraplegia, intellectual disability, nystagmus, and obesity. Human molecular genetics. 25(11):2158-2167

Konantz, M., Alghisi, E., Müller, J.S., Lenard, A., Esain, V., Carroll, K.J., Kanz, L., North, T.E., Lengerke, C. (2016) Evi1 regulates Notch activation to induce zebrafish hematopoietic stem cell emergence. The EMBO journal. 35(21):2315-2331

Matsuoka, R.L., Marass, M., Avdesh, A., Helker, C.S., Maischein, H.M., Grosse, A.S., Kaur, H., Lawson, N.D., Herzog, W., Stainier, D.Y. (2016) Radial glia regulate vascular patterning around the developing spinal cord. eLIFE. 5

Pantoja, C., Hoagland, A., Carroll, E.C., Karalis, V., Conner, A., Isacoff, E.Y. (2016) Neuromodulatory Regulation of Behavioral Individuality in Zebrafish. Neuron. 91(3):587-601

Pipalia, T.G., Koth, J., Roy, S.D., Hammond, C.L., Kawakami, K., Hughes, S.M. (2016) Cellular dynamics of regeneration reveals role of two distinct Pax7 stem cell populations in larval zebrafish muscle repair. Disease models & mechanisms. 9(6):671-84

Shah, A., Kannambath, S., Herbst, S., Rogers, A., Soresi, S., Carby, M., Reed, A., Mostowy, S., Fisher, M.C., Shaunak, S., Armstrong-James, D.P. (2016) Calcineurin Orchestrates Lateral Transfer of Aspergillus fumigatus During Macrophage Cell Death. American Journal of Respiratory and Critical Care Medicine. 194(9):1127-1139

Shin, M., Male, I., Beane, T.J., Villefranc, J.A., Kok, F.O., Zhu, L.J., Lawson, N.D. (2016) Vegfc acts through ERK to induce sprouting and differentiation of trunk lymphatic progenitors. Development (Cambridge, England). 143(20):3785-3795

Sternberg, J.R., Severi, K.E., Fidelin, K., Gomez, J., Ihara, H., Alcheikh, Y., Hubbard, J.M., Kawakami, K., Suster, M., Wyart, C. (2016) Optimization of a Neurotoxin to Investigate the Contribution of Excitatory Interneurons to Speed Modulation In Vivo. Current biology : CB. 26(17):2319-28

Uemura, M., Nagasawa, A., Terai, K. (2016) Yap/Taz transcriptional activity in endothelial cells promotes intramembranous ossification via the BMP pathway. Scientific Reports. 6:27473

Wen, H., McGinley, M.J., Mandel, G., Brehm, P. (2016) Nonequivalent release sites govern synaptic depression. Proceedings of the National Academy of Sciences of the United States of America. 113(3):E378-86

Yabe, T., Hoshijima, K., Yamamoto, T., Takada, S. (2016) Mesp quadruple zebrafish mutant reveals different roles of mesp genes in somite segmentation between mouse and zebrafish. Development (Cambridge, England). 143(15):2842-52

Auer, T.O., Xiao, T., Bercier, V., Gebhardt, C., Duroure, K., Concordet, J.P., Wyart, C., Suster, M., Kawakami, K., Wittbrodt, J., Baier, H., Del Bene, F. (2015) Deletion of a kinesin I motor unmasks a mechanism of homeostatic branching control by neurotrophin-3. eLIFE. 4

Heckel, E., Boselli, F., Roth, S., Krudewig, A., Belting, H. G., Charvin, G., Vermot, J. (2015) Oscillatory Flow Modulates Mechanosensitive klf2a Expression through trpv4 and trpp2 during Heart Valve Development. Current biology : CB. 25(10):1354-1361

Herbst, S., Shah, A., Mazon Moya, M., Marzola, V., Jensen, B., Reed, A., Birrell, M.A., Saijo, S., Mostowy, S., Shaunak, S., Armstrong-James, D. (2015) Phagocytosis-dependent activation of a TLR9-BTK-calcineurin-NFAT pathway co-ordinates innate immunity to Aspergillus fumigatus. EMBO Molecular Medicine. 7(3):240-58

Kashiwada, T., Fukuhara, S., Terai, K., Tanaka, T., Wakayama, Y., Ando, K., Nakajima, H., Fukui, H., Yuge, S., Saito, Y., Gemma, A., Mochizuki, N. (2015) β-catenin-dependent transcription is central to Bmp-mediated formation of venous vessels. Development (Cambridge, England). 142(3):497-509

Kozol, R.A., Cukier, H.N., Zou, B., Mayo, V., De Rubeis, S., Cai, G., Griswold, A.J., Whitehead, P.L., Haines, J.L., Gilbert, J.R., Cuccaro, M.L., Martin, E.R., Baker, J.D., Buxbaum, J.D., Pericak-Vance, M.A., Dallman, J.E. (2015) Two knockdown models of the autism genes SYNGAP1 and SHANK3 in zebrafish produce similar behavioral phenotypes associated with embryonic disruptions of brain morphogenesis. Human molecular genetics. 24(14):4006-23

Mackay, E.W., Apschner, A., Schulte-Merker, S. (2015) Vitamin K reduces hypermineralisation in zebrafish models of PXE and GACI. Development (Cambridge, England). 142:1095-101

Marsden, K.C., Granato, M. (2015) In Vivo Ca(2+) Imaging Reveals that Decreased Dendritic Excitability Drives Startle Habituation. Cell Reports. 13:1733-40

Nguyen Chi, M., Laplace-Builhe, B., Travnickova, J., Luz-Crawford, P., Tejedor, G., Phan, Q.T., Duroux-Richard, I., Levraud, J.P., Kissa, K., Lutfalla, G., Jorgensen, C., Djouad, F. (2015) Identification of polarized macrophage subsets in zebrafish. eLIFE. 4:e07288

Ogino, K., Low, S.E., Yamada, K., Saint-Amant, L., Zhou, W., Muto, A., Asakawa, K., Nakai, J., Kawakami, K., Kuwada, J.Y., Hirata, H. (2015) RING finger protein 121 facilitates the degradation and membrane localization of voltage-gated sodium channels. Proceedings of the National Academy of Sciences of the United States of America. 112(9):2859-64

Otsuna, H., Hutcheson, D., Duncan, R., McPherson, A., Scoresby, A., Gaynes, B., Tong, Z., Fujimoto, E., Kwan, K., Chien, C., Dorsky, R. (2015) High-resolution analysis of CNS expression patterns in zebrafish Gal4 enhancer-trap lines. Developmental Dynamics : an official publication of the American Association of Anatomists. 244(6):785-96

Phng, L.K., Gebala, V., Bentley, K., Philippides, A., Wacker, A., Mathivet, T., Sauteur, L., Stanchi, F., Belting, H.G., Affolter, M., Gerhardt, H. (2015) Formin-mediated actin polymerization at endothelial junctions is required for vessel lumen formation and stabilization. Developmental Cell. 32:123-32

Rasmussen, J.P., Sack, G.S., Martin, S.M., Sagasti, A. (2015) Vertebrate epidermal cells are broad-specificity phagocytes that clear sensory axon debris. The Journal of neuroscience : the official journal of the Society for Neuroscience. 35:559-70

Rochon, E.R., Wright, D.S., Schubert, M.M., Roman, B.L. (2015) Context-specific interactions between Notch and ALK1 cannot explain ALK1-associated arteriovenous malformations. Cardiovascular research. 107(1):143-52

Strate, I., Tessadori, F., Bakkers, J. (2015) Glypican4 promotes cardiac specification and differentiation by attenuating canonical Wnt and Bmp signaling. Development (Cambridge, England). 142:1767-76

Takeuchi, M., Matsuda, K., Yamaguchi, S., Asakawa, K., Miyasaka, N., Lal, P., Yoshihara, Y., Koga, A., Kawakami, K., Shimizu, T., Hibi, M. (2015) Establishment of Gal4 transgenic zebrafish lines for analysis of development of cerebellar neural circuitry. Developmental Biology. 397(1):1-17

Taylor, S.M., Alvarez-Delfin, K., Saade, C.J., Thomas, J.L., Thummel, R., Fadool, J.M., Hitchcock, P.F. (2015) The bHLH Transcription Factor NeuroD Governs Photoreceptor Genesis and Regeneration Through Delta-Notch Signaling. Investigative ophthalmology & visual science. 56:7496-7515

Voelz, K., Gratacap, R.L., Wheeler, R.T. (2015) A zebrafish larval model reveals early tissue-specific innate immune responses to Mucor circinelloides. Disease models & mechanisms. 8(11):1375-88

Wolman, M.A., Jain, R.A., Marsden, K.C., Bell, H., Skinner, J., Hayer, K.E., Hogenesch, J.B., Granato, M. (2015) A Genome-wide Screen Identifies PAPP-AA-Mediated IGFR Signaling as a Novel Regulator of Habituation Learning. Neuron. 85(6):1200-11

Yokota, Y., Nakajima, H., Wakayama, Y., Muto, A., Kawakami, K., Fukuhara, S., Mochizuki, N. (2015) Endothelial Ca(2+) oscillations reflect VEGFR signaling-regulated angiogenic capacity in vivo. eLIFE. 4

Apschner, A., Huitema, L.F., Ponsioen, B., Peterson-Maduro, J., Schulte-Merker, S. (2014) Pathological mineralization in a zebrafish enpp1 mutant exhibits features of Generalized Arterial Calcification of Infancy (GACI) and Pseudoxanthoma Elasticum (PXE). Disease models & mechanisms. 7(7):811-22

Fero, K., Bergeron, S.A., Horstick, E.J., Codore, H., Li, G.H., Ono, F., Dowling, J.J., and Burgess, H.A. (2014) Impaired embryonic motility in dusp27 mutants reveals a developmental defect in myofibril structure. Disease models & mechanisms. 7(2):289-98

Hodatsu, A., Konno, T., Hayashi, K., Funada, A., Fujita, T., Nagata, Y., Fujino, N., Kawashiri, M.A., Yamagishi, M. (2014) Compound Heterozygosity Deteriorates Phenotypes of Hypertrophic Cardiomyopathy with Founder MYBPC3 Mutation: Evidence From Patients and Zebrafish Models. American journal of physiology. Heart and circulatory physiology. 307(11):H1594-604

Knogler, L.D., Ryan, J., Saint-Amant, L., Drapeau, P. (2014) A hybrid electrical/chemical circuit in the spinal cord generates a transient embryonic motor behavior. The Journal of neuroscience : the official journal of the Society for Neuroscience. 34:9644-55

Miyasaka, N., Arganda-Carreras, I., Wakisaka, N., Masuda, M., Sümbül, U., Seung, H.S., Yoshihara, Y. (2014) Olfactory projectome in the zebrafish forebrain revealed by genetic single-neuron labelling. Nature communications. 5:3639

Sauteur, L., Krudewig, A., Herwig, L., Ehrenfeuchter, N., Lenard, A., Affolter, M., Belting, H.G. (2014) Cdh5/VE-cadherin Promotes Endothelial Cell Interface Elongation via Cortical Actin Polymerization during Angiogenic Sprouting. Cell Reports. 9:504-13

van Impel, A., Zhao, Z., Hermkens, D.M., Roukens, M.G., Fischer, J.C., Peterson-Maduro, J., Duckers, H., Ober, E.A., Ingham, P.W., and Schulte-Merker, S. (2014) Divergence of zebrafish and mouse lymphatic cell fate specification pathways. Development (Cambridge, England). 141(6):1228-1238

Alghisi, E., Distel, M., Malagola, M., Anelli, V., Santoriello, C., Herwig, L., Krudewig, A., Henkel, C.V., Russo, D., and Mione, M.C. (2013) Targeting oncogene expression to endothelial cells induces proliferation of the myelo-erythroid lineage by repressing the notch pathway. Leukemia. 24(6):943-53

Braubach, O.R., Miyasaka, N., Koide, T., Yoshihara, Y., Croll, R.P., and Fine, A. (2013) Experience-Dependent versus Experience-Independent Postembryonic Development of Distinct Groups of Zebrafish Olfactory Glomeruli. The Journal of neuroscience : the official journal of the Society for Neuroscience. 33(16):6905-6916

Ellis, K., Bagwell, J., and Bagnat, M. (2013) Notochord vacuoles are lysosome-related organelles that function in axis and spine morphogenesis. The Journal of cell biology. 200(5):667-679

Hong, E., Santhakumar, K., Akitake, C.A., Ahn, S.J., Thisse, C., Thisse, B., Wyart, C., Mangin, J.M., and Halpern, M.E. (2013) Cholinergic left-right asymmetry in the habenulo-interpeduncular pathway. Proceedings of the National Academy of Sciences of the United States of America. 110(52):21171-21176

Kishimoto, N., Asakawa, K., Madelaine, R., Blader, P., Kawakami, K., and Sawamoto, K. (2013) Interhemispheric asymmetry of olfactory input-dependent neuronal specification in the adult brain. Nature Neuroscience. 16(7):884-8

Kwon, H.B., Fukuhara, S., Asakawa, K., Ando, K., Kashiwada, T., Kawakami, K., Hibi, M., Kwon, Y.G., Kim, K.W., Alitalo, K., and Mochizuki, N. (2013) The parallel growth of motoneuron axons with the dorsal aorta depends on Vegfc/Vegfr3 signaling in zebrafish. Development (Cambridge, England). 140(19):4081-4090

Liu, F., Pogoda, H.M., Pearson, C.A., Ohyama, K., Löhr, H., Hammerschmidt, M., and Placzek, M. (2013) Direct and indirect roles of Fgf3 and Fgf10 in innervation and vascularisation of the vertebrate hypothalamic neurohypophysis. Development (Cambridge, England). 140(5):1111-1122

Mostowy, S., Boucontet, L., Mazon Moya, M.J., Sirianni, A., Boudinot, P., Hollinshead, M., Cossart, P., Herbomel, P., Levraud, J.P., and Colucci-Guyon, E. (2013) The Zebrafish as a New Model for the In Vivo Study of Shigella flexneri Interaction with Phagocytes and Bacterial Autophagy. PLoS pathogens. 9(9):e1003588

Muto, A., Ohkura, M., Abe, G., Nakai, J., and Kawakami, K. (2013) Real-Time Visualization of Neuronal Activity during Perception. Current biology : CB. 23(4):307-311

Renninger, S.L., and Orger, M.B. (2013) Two-photon imaging of neural population activity in zebrafish. Methods (San Diego, Calif.). 62(3):255-67

Satou, C., Kimura, Y., Hirata, H., Suster, M.L., Kawakami, K., and Higashijima, S. (2013) Transgenic tools to characterize neuronal properties of discrete populations of zebrafish neurons. Development (Cambridge, England). 140(18):3927-3931

Umeda, K., Shoji, W., Sakai, S., Muto, A., Kawakami, K., Ishizuka, T., and Yawo, H. (2013) Targeted expression of a chimeric channelrhodopsin in zebrafish under regulation of Gal4-UAS system. Neuroscience research. 75(1):69-75

Wada, H., Ghysen, A., Asakawa, K., Abe, G., Ishitani, T., and Kawakami, K. (2013) Wnt/Dkk Negative Feedback Regulates Sensory Organ Size in Zebrafish. Current biology : CB. 23(16):1559-65

Bergeron, S.A., Hannan, M.C., Codore, H., Fero, K., Li, G.H., Moak, Z., Yokogawa, T., and Burgess, H.A. (2012) Brain selective transgene expression in zebrafish using an NRSE derived motif. Frontiers in neural circuits. 6:110

Fukui, H., Shiba, D., Asakawa, K., Kawakami, K., and Yokoyama, T. (2012) The ciliary protein Nek8/Nphp9 acts downstream of Inv/Nphp2 during pronephros morphogenesis and left-right establishment in zebrafish. FEBS letters. 586(16):2273-2279

Lee, O., Takesono, A., Tada, M., Tyler, C.R., and Kudoh, T. (2012) Biosensor Zebrafish Provide New Insights into Potential Health Effects of Environmental Estrogens. Environmental health perspectives. 120(7):990-996

Okuda, K.S., Astin, J.W., Misa, J.P., Flores, M.V., Crosier, K.E., and Crosier, P.S. (2012) lyve1 expression reveals novel lymphatic vessels and new mechanisms for lymphatic vessel development in zebrafish. Development (Cambridge, England). 139(13):2381-2391

Tessadori, F., van Weerd, J.H., Burkhard, S.B., Verkerk, A.O., de Pater, E., Boukens, B.J., Vink, A., Christoffels, V.M., and Bakkers, J. (2012) Identification and functional characterization of cardiac pacemaker cells in zebrafish. PLoS One. 7(10):e47644

Akitake, C.M., Macurak, M., Halpern, M.E., and Goll, M.G. (2011) Transgenerational analysis of transcriptional silencing in zebrafish. Developmental Biology. 352(2):191-201

Bussmann, J., Wolfe, S.A., and Siekmann, A.F. (2011) Arterial-venous network formation during brain vascularization involves hemodynamic regulation of chemokine signaling. Development (Cambridge, England). 138(9):1717-1726

Gutnick, A., Blechman, J., Kaslin, J., Herwig, L., Belting, H.G., Affolter, M., Bonkowsky, J.L., and Levkowitz, G. (2011) The hypothalamic neuropeptide oxytocin is required for formation of the neurovascular interface of the pituitary. Developmental Cell. 21(4):642-654

Muto, A., and Kawakami, K. (2011) Imaging functional neural circuits in zebrafish with a new GCaMP and the Gal4FF-UAS system. Communicative & integrative biology. 4(5):566-568

Suster, M.L., Abe, G., Schouw, A., and Kawakami, K. (2011) Transposon-mediated BAC transgenesis in zebrafish. Nature Protocols. 6(12):1998-2021

Totong, R., Schell, T., Lescroart, F., Ryckebüsch, L., Lin, Y.F., Zygmunt, T., Herwig, L., Krudewig, A., Gershoony, D., Belting, H.G., Affolter, M., Torres-Vazquez, J., and Yelon, D. (2011) The novel transmembrane protein Tmem2 is essential for coordination of myocardial and endocardial morphogenesis. Development (Cambridge, England). 138(19):4199-4205

Asakawa, K., and Kawakami, K. (2010) A transgenic zebrafish for monitoring in vivo microtubule structures. Developmental Dynamics : an official publication of the American Association of Anatomists. 239(10):2695-2699

Asakawa, K., and Kawakami, K. (2009) The Tol2-mediated Gal4-UAS method for gene and enhancer trapping in zebrafish. Methods (San Diego, Calif.). 49(3):275-281

Koide, T., Miyasaka, N., Morimoto, K., Asakawa, K., Urasaki, A., Kawakami, K., and Yoshihara, Y. (2009) Olfactory neural circuitry for attraction to amino acids revealed by transposon-mediated gene trap approach in zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 106(24):9884-9889

Asakawa, K., Suster, M.L., Mizusawa, K., Nagayoshi, S., Kotani, T., Urasaki, A., Kishimoto, Y., Hibi, M., and Kawakami, K. (2008) Genetic dissection of neural circuits by Tol2 transposon-mediated Gal4 gene and enhancer trapping in zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 105(4):1255-1260