ZFIN

ZFIN ID: ZDB-EFG-070117-1

ZFIN ID: ZDB-EFG-070117-1

CITATIONS (7211 total)

Engineered Foreign Gene Name:	EGFP
Engineered Foreign Gene Symbol:	EGFP

Komiya, H., Sato, Y., Kimura, H., Kawakami, A. (2024) Independent mesenchymal progenitor pools respectively produce and maintain osteogenic and chondrogenic cells in zebrafish. Development, growth & differentiation. 66(2):161-171

Liu, Z., Meng, Y., Ishikura, A., Kawakami, A. (2024) Live tracking of basal stem cells of the epidermis during growth, homeostasis and injury response in zebrafish. Development (Cambridge, England). 151(2):

Zebrafish Nomenclature Committee (2024) Nomenclature Data Curation (2024). Nomenclature Committee Submission.

Allers, M., Bakker, P.A., Hoeksma, J., Spaink, H.P., den Hertog, J. (2023) Loss of Shp1 impairs myeloid cell function and causes lethal inflammation in zebrafish larvae. Disease models & mechanisms. 16(2):

Angueyra, J.M., Kunze, V.P., Patak, L.K., Kim, H., Kindt, K., Li, W. (2023) Transcription factors underlying photoreceptor diversity. eLIFE. 12:

Baldera, D., Baxendale, S., van Hateren, N.J., Marzo, M., Glendenning, E., Geng, F.S., Yokoya, K., Knight, R.D., Whitfield, T.T. (2023) Enhancer trap lines with GFP driven by smad6b and frizzled1 regulatory sequences for the study of epithelial morphogenesis in the developing zebrafish inner ear. Journal of anatomy. 243(1):78-89

Barazzuol, L., Cieri, D., Facchinello, N., Calì, T., Washbourne, P., Argenton, F., Pizzo, P. (2023) Unraveling Presenilin 2 Functions in a Knockout Zebrafish Line to Shed Light into Alzheimer's Disease Pathogenesis. Cells. 12(3):

Beckers, A., Masin, L., Van Dyck, A., Bergmans, S., Vanhunsel, S., Zhang, A., Verreet, T., Poulain, F.E., Farrow, K., Moons, L. (2023) Optic nerve injury-induced regeneration in the adult zebrafish is accompanied by spatiotemporal changes in mitochondrial dynamics. Neural regeneration research. 18:219-225

Bhandari, S., Kim, Y.I., Nam, I.K., Hong, K., Jo, Y., Yoo, K.W., Liao, W., Lim, J.Y., Kim, S.J., Um, J.Y., Kim, P.K., Lee, H.S., Ryu, D., Kim, S.H., Kwak, S., Park, R., Choe, S.K. (2023) Loss of pex5 sensitizes zebrafish to fasting due to deregulated mitochondria, mTOR, and autophagy. Cellular and molecular life sciences : CMLS. 80:6969

Binder, V., Li, W., Faisal, M., Oyman, K., Calkins, D.L., Shaffer, J., Teets, E.M., Sher, S., Magnotte, A., Belardo, A., Deruelle, W., Gregory, T.C., Orwick, S., Hagedorn, E.J., Perlin, J.R., Avagyan, S., Lichtig, A., Barrett, F., Ammerman, M., Yang, S., Zhou, Y., Carson, W.E., Shive, H.R., Blachly, J.S., Lapalombella, R., Zon, L.I., Blaser, B.W. (2023) Microenvironmental control of hematopoietic stem cell fate via CXCL8 and protein kinase C. Cell Reports. 42:112528112528

Blum, N., Harris, M.P. (2023) Localized heterochrony integrates overgrowth potential of oncogenic clones. Disease models & mechanisms. 16(2):

Collier, A.D., Yasmin, N., Karatayev, O., Abdulai, A.R., Yu, B., Khalizova, N., Fam, M., Leibowitz, S.F. (2023) Neuronal chemokine concentration gradients mediate effects of embryonic ethanol exposure on ectopic hypocretin/orexin neurons and behavior in zebrafish. Scientific Reports. 13:14471447

DeMoya, R.A., Forman-Rubinsky, R.E., Fontaine, D., Shin, J., Watkins, S.C., Lo, C.W., Tsang, M. (2023) Sin3a associated protein 130 kDa, sap130, plays an evolutionary conserved role in zebrafish heart development. Frontiers in cell and developmental biology. 11:11971091197109

Deshmukh, D., Hsu, Y.F., Chiu, C.C., Jadhao, M., Hsu, S.C.N., Hu, S.Y., Yang, S.H., Liu, W. (2023) Antiangiogenic potential of Lepista nuda extract suppressing MAPK/p38 signaling-mediated developmental angiogenesis in zebrafish and HUVECs. Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie. 159:114219114219

Enders, M., Weier, A., Chunder, R., An, Y., Bremm, F., Feigenspan, A., Buettner, C., Ekici, A.B., Mingardo, E., Odermatt, B., Kuerten, S. (2023) Impact of the Voltage-Gated Calcium Channel Antagonist Nimodipine on the Development of Oligodendrocyte Precursor Cells. International Journal of Molecular Sciences. 24(4):

England, S.J., Rusnock, A.K., Mujcic, A., Kowalchuk, A., de Jager, S., Hilinski, W.C., Juárez-Morales, J.L., Smith, M.E., Grieb, G., Banerjee, S., Lewis, K.E. (2023) Molecular analyses of zebrafish V0v spinal interneurons and identification of transcriptional regulators downstream of Evx1 and Evx2 in these cells. Neural Development. 18:88

Fan, J., Hale, V.L., Lelieveld, L.T., Whitworth, L.J., Busch-Nentwich, E.M., Troll, M., Edelstein, P.H., Cox, T.M., Roca, F.J., Aerts, J.M.F.G., Ramakrishnan, L. (2023) Gaucher disease protects against tuberculosis. Proceedings of the National Academy of Sciences of the United States of America. 120:e2217673120e2217673120

Fung, C., Wilding, B., Schittenhelm, R.B., Bryson-Richardson, R.J., Bird, P.I. (2023) Expression of the Z Variant of α1-Antitrypsin Suppresses Hepatic Cholesterol Biosynthesis in Transgenic Zebrafish. International Journal of Molecular Sciences. 24(3):

Gafranek, J.T., D'Aniello, E., Ravisankar, P., Thakkar, K., Vagnozzi, R.J., Lim, H.W., Salomonis, N., Waxman, J.S. (2023) Sinus venosus adaptation models prolonged cardiovascular disease and reveals insights into evolutionary transitions of the vertebrate heart. Nature communications. 14:55095509

Gaillard, A.L., Mohamad, T., Quan, F.B., de Cian, A., Mosimann, C., Tostivint, H., Pézeron, G. (2023) Urp1 and Urp2 act redundantly to maintain spine shape in zebrafish larvae. Developmental Biology. 496:36-51

Gómez-Gallegos, A.A., Ramírez-Vidal, L., Becerril-Rico, J., Pérez-Islas, E., Hernandez-Peralta, Z.J., Toledo-Guzmán, M.E., García-Carrancá, A., Langley, E., Hernández-Guerrero, A., López-Casillas, F., Herrera-Goepfert, R., Oñate-Ocaña, L.F., Ortiz-Sánchez, E. (2023) CD24+CD44+CD54+EpCAM+ gastric cancer stem cells predict tumor progression and metastasis: clinical and experimental evidence. Stem Cell Research & Therapy. 14:1616

Hu, W., Koch, B.E.V., Lamers, G.E.M., Forn-Cuní, G., Spaink, H.P. (2023) Specificity of the innate immune responses to different classes of non-tuberculous mycobacteria. Frontiers in immunology. 13:10754731075473

Kar, R.D., Eberhart, J.K. (2023) Predicting Modifiers of Genotype-Phenotype Correlations in Craniofacial Development. International Journal of Molecular Sciences. 24(2):

Khatri, D., Putoux, A., Cologne, A., Kaltenbach, S., Besson, A., Bertiaux, E., Guguin, J., Fendler, A., Dupont, M.A., Benoit-Pilven, C., Qebibo, L., Ahmed-Elie, S., Audebert-Bellanger, S., Blanc, P., Rambaud, T., Castelle, M., Cornen, G., Grotto, S., Guët, A., Guibaud, L., Michot, C., Odent, S., Ruaud, L., Sacaze, E., Hamel, V., Bordonné, R., Leutenegger, A.L., Edery, P., Burglen, L., Attié-Bitach, T., Mazoyer, S., Delous, M. (2023) Deficiency of the minor spliceosome component U4atac snRNA secondarily results in ciliary defects in human and zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 120:e2102569120e2102569120

Kim, I., Seok, S.H., Lee, H.Y. (2023) Development of a Zebrafish Larvae Model for Diabetic Heart Failure With Reduced Ejection Fraction. Korean circulation journal. 53:344634-46

Kolb, J., Tsata, V., John, N., Kim, K., Möckel, C., Rosso, G., Kurbel, V., Parmar, A., Sharma, G., Karandasheva, K., Abuhattum, S., Lyraki, O., Beck, T., Müller, P., Schlüßler, R., Frischknecht, R., Wehner, A., Krombholz, N., Steigenberger, B., Beis, D., Takeoka, A., Blümcke, I., Möllmert, S., Singh, K., Guck, J., Kobow, K., Wehner, D. (2023) Small leucine-rich proteoglycans inhibit CNS regeneration by modifying the structural and mechanical properties of the lesion environment. Nature communications. 14:68146814

Kowald, S., Huge, Y., Tandiono, D., Ali, Z., Vazquez-Rodriguez, G., Erkstam, A., Fahlgren, A., Sherif, A., Cao, Y., Jensen, L.D. (2023) Novel Zebrafish Patient-Derived Tumor Xenograft Methodology for Evaluating Efficacy of Immune-Stimulating BCG Therapy in Urinary Bladder Cancer. Cells. 12(3):

Lei, W., Liu, Z., Su, Z., Meng, P., Zhou, C., Chen, X., Hu, Z., Xiao, A., Zhou, M., Huang, L., Zhang, Y., Qin, X., Wang, J., Zhu, F., Nie, J. (2023) Hyperhomocysteinemia potentiates megakaryocyte differentiation and thrombopoiesis via GH-PI3K-Akt axis. Journal of Hematology & Oncology. 16:8484

Leid, J., Gray, R., Rakita, P., Koenig, A.L., Tripathy, R., Fitzpatrick, J.A.J., Kaufman, C., Solnica-Krezel, L., Lavine, K.J. (2023) Deletion of taf1 and taf5 in zebrafish capitulate cardiac and craniofacial abnormalities associated with TAFopathies through perturbations in metabolism. Biology Open. 12(7):

Lelièvre, E., Bureau, C., Bordat, Y., Frétaud, M., Langevin, C., Jopling, C., Kissa, K. (2023) Deficiency in hereditary hemorrhagic telangiectasia-associated Endoglin elicits hypoxia-driven heart failure in zebrafish. Disease models & mechanisms. 16(5):

Leonidis, G., Koukiali, A., Sigala, I., Tsimaratou, K., Beis, D., Giannakouros, T., Nikolakaki, E., Sarli, V. (2023) Synthesis and Anti-Angiogenic Activity of Novel c(RGDyK) Peptide-Based JH-VII-139-1 Conjugates. Pharmaceutics. 15(2):

Li, W., Liu, W., Mo, C., Yi, M., Gui, J. (2023) Two Novel lncRNAs Regulate Primordial Germ Cell Development in Zebrafish. Cells. 12(4):

Liu, Z., Tan, S., Zhou, L., Chen, L., Liu, M., Wang, W., Tang, Y., Yang, Q., Chi, S., Jiang, P., Zhang, Y., Cui, Y., Qin, J., Hu, X., Li, S., Liu, Q., Chen, L., Li, S., Burstein, E., Li, W., Zhang, X., Mo, X., Jia, D. (2023) SCGN deficiency is a risk factor for autism spectrum disorder. Signal transduction and targeted therapy. 8:33

Lu, F., Leach, L.L., Gross, J.M. (2023) A CRISPR-Cas9-mediated F0 screen to identify pro-regenerative genes in the zebrafish retinal pigment epithelium. Scientific Reports. 13:31423142

Maili, L., Tandon, B., Yuan, Q., Menezes, S., Chiu, F., Hashmi, S.S., Letra, A., Eisenhoffer, G.T., Hecht, J.T. (2023) Disruption of fos causes craniofacial anomalies in developing zebrafish. Frontiers in cell and developmental biology. 11:11418931141893

Martin, K.E., Ravisankar, P., Beerens, M., MacRae, C.A., Waxman, J.S. (2023) Nr2f1a maintains atrial nkx2.5 expression to repress pacemaker identity within venous atrial cardiomyocytes of zebrafish. eLIFE. 12:

Mattis, K.K., Krentz, N.A.J., Metzendorf, C., Abaitua, F., Spigelman, A.F., Sun, H., Ikle, J.M., Thaman, S., Rottner, A.K., Bautista, A., Mazzaferro, E., Perez-Alcantara, M., Manning Fox, J.E., Torres, J.M., Wesolowska-Andersen, A., Yu, G.Z., Mahajan, A., Larsson, A., MacDonald, P.E., Davies, B., den Hoed, M., Gloyn, A.L. (2023) Loss of RREB1 in pancreatic beta cells reduces cellular insulin content and affects endocrine cell gene expression. Diabetologia. 66(4):674-694

Morgan, K.J., Doggett, K., Geng, F., Mieruszynski, S., Whitehead, L., Smith, K.A., Hogan, B.M., Simons, C., Baillie, G.J., Molania, R., Papenfuss, A.T., Hall, T.E., Ober, E.A., Stainier, D.Y.R., Gong, Z., Heath, J.K. (2023) ahctf1 and kras mutations combine to amplify oncogenic stress and restrict liver overgrowth in a zebrafish model of hepatocellular carcinoma. eLIFE. 12:

Qi, H., Kan, K., Sticht, C., Bennewitz, K., Li, S., Qian, X., Poschet, G., Kroll, J. (2023) Acrolein-inducing ferroptosis contributes to impaired peripheral neurogenesis in zebrafish. Frontiers in neuroscience. 16:10442131044213

Shao, G.J., Wang, X.L., Wei, M.L., Ren, D.L., Hu, B. (2023) DUSP2 deletion with CRISPR/Cas9 promotes Mauthner cell axonal regeneration at the early stage of zebrafish. Neural regeneration research. 18:577-581

Shi, L., Wang, Z., Li, Y., Song, Z., Yin, W., Hu, B. (2023) Deletion of the chd7 Hinders Oligodendrocyte Progenitor Cell Development and Myelination in Zebrafish. International Journal of Molecular Sciences. 24(17):

Shi, T., Beaulieu, M.O., Saunders, L.M., Fabian, P., Trapnell, C., Segil, N., Crump, J.G., Raible, D.W. (2023) Single-cell transcriptomic profiling of the zebrafish inner ear reveals molecularly distinct hair cell and supporting cell subtypes. eLIFE. 12:

Tamaki, T., Yoshida, T., Shibata, E., Nishihara, H., Ochi, H., Kawakami, A. (2023) Splashed E-box and AP-1 motifs cooperatively drive regeneration response and shape regeneration abilities. Biology Open. 12(2):

Vedder, V.L., Reinberger, T., Haider, S.M.I., Eichelmann, L., Odenthal, N., Abdelilah-Seyfried, S., Aherrahrou, Z., Breuer, M., Erdmann, J. (2023) pyHeart4Fish: Chamber-specific heart phenotype quantification of zebrafish in high-content screens. Frontiers in cell and developmental biology. 11:11438521143852

Wu, J., Li, J., Chen, K., Liu, G., Zhou, Y., Chen, W., Zhu, X., Ni, T.T., Zhang, B., Jin, D., Li, D., Kang, L., Wu, Y., Zhu, P., Xie, P., Zhong, T.P. (2023) Atf7ip and Setdb1 interaction orchestrates the hematopoietic stem and progenitor cell state with diverse lineage differentiation. Proceedings of the National Academy of Sciences of the United States of America. 120:e2209062120e2209062120

Abrial, M., Basu, S., Huang, M., Butty, V., Schwertner, A., Jeffrey, S., Jordan, D., Burns, C.E., Burns, C.G. (2022) Latent TGFβ binding proteins 1 and 3 protect the larval zebrafish outflow tract from aneurysmal dilatation. Disease models & mechanisms. 15(3):

Agarwala, S., Kim, K.Y., Phan, S., Ju, S., Kong, Y.E., Castillon, G.A., Bushong, E.A., Ellisman, M.H., Tamplin, O.J. (2022) Defining the ultrastructure of the hematopoietic stem cell niche by correlative light and electron microscopy. eLIFE. 11:

Ahmed, M., Kojima, Y., Masai, I. (2022) Strip1 regulates retinal ganglion cell survival by suppressing Jun-mediated apoptosis to promote retinal neural circuit formation. eLIFE. 11:

Ahuja, N., Ostwald, P., Gendernalik, A., Guzzolino, E., Pitto, L., Bark, D., Garrity, D.M. (2022) Myocardial Afterload Is a Key Biomechanical Regulator of Atrioventricular Myocyte Differentiation in Zebrafish. Journal of cardiovascular development and disease. 9(1):

Ai, X., Ye, Z., Xiao, C., Zhong, J., Lancman, J.J., Chen, X., Pan, X., Yang, Y., Zhou, L., Wang, X., Shi, H., Zhang, D., Yao, Y., Cao, D., Zhao, C. (2022) Clinically relevant orthotopic xenograft models of patient-derived glioblastoma in zebrafish. Disease models & mechanisms. 15(4)

Akerberg, A.A., Trembley, M., Butty, V., Schwertner, A., Zhao, L., Beerens, M., Liu, X., Mahamdeh, M., Yuan, S., Boyer, L., MacRae, C., Nguyen, C., Pu, W.T., Burns, C.E., Burns, C.G. (2022) RBPMS2 Is a Myocardial-Enriched Splicing Regulator Required for Cardiac Function. Circulation research. 131(12):980-1000

Al-Dahmani, Z.M., Li, X., Wiggenhauser, L.M., Ott, H., Kruithof, P.D., Lunev, S., A Batista, F., Luo, Y., Dolga, A.M., Morton, N.M., Groves, M.R., Kroll, J., van Goor, H. (2022) Thiosulfate sulfurtransferase prevents hyperglycemic damage to the zebrafish pronephros in an experimental model for diabetes. Scientific Reports. 12:12077

Al-Kurbi, A.A., Da'as, S.I., Aamer, W., Krishnamoorthy, N., Poggiolini, I., Abdelrahman, D., Elbashir, N., Al-Shabeeb Akil, A., Glass, G.E., Fakhro, K.A. (2022) A recessive variant in SIM2 in a child with complex craniofacial anomalies and global developmental delay. European Journal of Medical Genetics. 65(4):104455

Alhashem, Z., Feldner-Busztin, D., Revell, C., Alvarez-Garcillan Portillo, M., Camargo-Sosa, K., Richardson, J., Rocha, M., Gauert, A., Corbeaux, T., Milanetto, M., Argenton, F., Tiso, N., Kelsh, R., Prince, V.E., Bentley, K., Linker, C. (2022) Notch controls the cell cycle to define leader versus follower identities during collective cell migration. eLIFE. 11:

Ali, Z., Vildevall, M., Rodriguez, G.V., Tandiono, D., Vamvakaris, I., Evangelou, G., Lolas, G., Syrigos, K.N., Villanueva, A., Wick, M., Omar, S., Erkstam, A., Schueler, J., Fahlgren, A., Jensen, L.D. (2022) Zebrafish patient-derived xenograft models predict lymph node involvement and treatment outcome in non-small cell lung cancer. Journal of experimental & clinical cancer research : CR. 41:58

Almohaisen, F.L.J., Heidary, S., Sobah, M.L., Ward, A.C., Liongue, C. (2022) B cell lymphoma 6A regulates immune development and function in zebrafish. Frontiers in cellular and infection microbiology. 12:887278

America, M., Bostaille, N., Eubelen, M., Martin, M., Stainier, D.Y.R., Vanhollebeke, B. (2022) An integrated model for Gpr124 function in Wnt7a/b signaling among vertebrates. Cell Reports. 39:110902

Amini, R., Bhatnagar, A., Schlüßler, R., Möllmert, S., Guck, J., Norden, C. (2022) Amoeboid-like migration ensures correct horizontal cell layer formation in the developing vertebrate retina. eLIFE. 11:

Ando, K., Tong, L., Peng, D., Vázquez-Liébanas, E., Chiyoda, H., He, L., Liu, J., Kawakami, K., Mochizuki, N., Fukuhara, S., Grutzendler, J., Betsholtz, C. (2022) KCNJ8/ABCC9-containing K-ATP channel modulates brain vascular smooth muscle development and neurovascular coupling. Developmental Cell. 57(11):1383-1399.e7

Annus, T., Müller, D., Jezsó, B., Ullaga, G., Németh, B., Harami, G.M., Orbán, L., Kovács, M., Varga, M. (2022) Bloom syndrome helicase contributes to germ line development and longevity in zebrafish. Cell Death & Disease. 13:363

Antón-Galindo, E., Dalla Vecchia, E., Orlandi, J.G., Castro, G., Gualda, E.J., Young, A.M.J., Guasch-Piqueras, M., Arenas, C., Herrera-Úbeda, C., Garcia-Fernàndez, J., Aguado, F., Loza-Alvarez, P., Cormand, B., Norton, W.H.J., Fernàndez-Castillo, N. (2022) Deficiency of the ywhaz gene, involved in neurodevelopmental disorders, alters brain activity and behaviour in zebrafish. Molecular psychiatry. 27(9):3739-3748

Arena, K.A., Zhu, Y., Kucenas, S. (2022) Transforming growth factor-beta signaling modulates perineurial glial bridging following peripheral spinal motor nerve injury in zebrafish. Glia. 70(10):1826-1849

Arnold, H., Panara, V., Hußmann, M., Filipek-Gorniok, B., Skoczylas, R., Ranefall, P., Gloger, M., Allalou, A., Hogan, B.M., Schulte-Merker, S., Koltowska, K. (2022) mafba and mafbb differentially regulate lymphatic endothelial cell migration in topographically distinct manners. Cell Reports. 39:110982

Arslan, M., Karadag, M., Onal, E., Gelinci, E., Cakan-Akdogan, G., Kalyoncu, S. (2022) Effect of non-repetitive linker on in vitro and in vivo properties of an anti-VEGF scFv. Scientific Reports. 12:5449

Asakawa, K., Handa, H., Kawakami, K. (2022) Optogenetic Phase Transition of TDP-43 in Spinal Motor Neurons of Zebrafish Larvae. Journal of visualized experiments : JoVE. (180):

Bandla, A., Melancon, E., Taylor, C.R., Davidson, A.E., Eisen, J.S., Ganz, J. (2022) A New Transgenic Tool to Study the Ret Signaling Pathway in the Enteric Nervous System. International Journal of Molecular Sciences. 23(24):

Banerjee, P., Joly, P., Jouneau, L., Jaszczyszyn, Y., Bourge, M., Affaticati, P., Levraud, J.P., Boudinot, P., Joly, J.S. (2022) Molecular and Cellular Analysis of the Repair of Zebrafish Optic Tectum Meninges Following Laser Injury. Cells. 11(13)

Barker, C.M., Miles, K.D., Doll, C.A. (2022) Fmrp regulates neuronal balance in embryonic motor circuit formation. Frontiers in neuroscience. 16:962901

Bartoszewski, S., Dawidziuk, M., Kasica, N., Durak, R., Jurek, M., Podwysocka, A., Guilbride, D.L., Podlasz, P., Winata, C.L., Gawlinski, P. (2022) A Zebrafish/Drosophila Dual System Model for Investigating Human Microcephaly. Cells. 11(17)

Bearce, E.A., Irons, Z.H., O'Hara-Smith, J.R., Kuhns, C.J., Fisher, S.I., Crow, W.E., Grimes, D.T. (2022) Urotensin II-related peptides, Urp1 and Urp2, control zebrafish spine morphology. eLIFE. 11:

Berdowski, W.M., van der Linde, H.C., Breur, M., Oosterhof, N., Beerepoot, S., Sanderson, L., Wijnands, L.I., de Jong, P., Tsai-Meu-Chong, E., de Valk, W., de Witte, M., van IJcken, W.F.J., Demmers, J., van der Knaap, M.S., Bugiani, M., Wolf, N.I., van Ham, T.J. (2022) Dominant-acting CSF1R variants cause microglial depletion and altered astrocytic phenotype in zebrafish and adult-onset leukodystrophy. Acta Neuropathologica. 144(2):211-239

Bergen, D.J.M., Tong, Q., Shukla, A., Newham, E., Zethof, J., Lundberg, M., Ryan, R., Youlten, S.E., Frysz, M., Croucher, P.I., Flik, G., Richardson, R.J., Kemp, J.P., Hammond, C.L., Metz, J.R. (2022) Regenerating zebrafish scales express a subset of evolutionary conserved genes involved in human skeletal disease. BMC Biology. 20:21

Berger, J., Berger, S., Currie, P.D. (2022) Mob4-dependent STRIPAK involves the chaperonin TRiC to coordinate myofibril and microtubule network growth. PLoS Genetics. 18:e1010287

Berger, J., Berger, S., Mok, Y.S.G., Li, M., Tarakci, H., Currie, P.D. (2022) Genetic dissection of novel myopathy models reveals a role of CapZα and Leiomodin 3 during myofibril elongation. PLoS Genetics. 18:e1010066

Bernardello, M., Gualda, E.J., Loza-Alvarez, P. (2022) Modular multimodal platform for classical and high throughput light sheet microscopy. Scientific Reports. 12:1969

Bhandiwad, A.A., Chu, N.C., Semenova, S.A., Holmes, G.A., Burgess, H.A. (2022) A cerebellar-prepontine circuit for tonic immobility triggered by an inescapable threat. Science advances. 8:eabo0549

Biagini, V., Busi, F., Anelli, V., Kerschbamer, E., Baghini, M., Gurrieri, E., Notarangelo, M., Pesce, I., van Niel, G., D'Agostino, V.G., Mione, M. (2022) Zebrafish Melanoma-Derived Interstitial EVs Are Carriers of ncRNAs That Induce Inflammation. International Journal of Molecular Sciences. 23(10)

Blanc, M., Dalmasso, G., Udina, F., Pujades, C. (2022) A dynamic and expandable Digital 3D-Atlas MAKER for monitoring the temporal changes in tissue growth during hindbrain morphogenesis. eLIFE. 11:

Boezio, G.L.M., Zhao, S., Gollin, J., Priya, R., Mansingh, S., Guenther, S., Fukuda, N., Gunawan, F., Stainier, D.Y.R. (2022) The developing epicardium regulates cardiac chamber morphogenesis by promoting cardiomyocyte growth. Disease models & mechanisms. 16(5):

Boger, M., Bennewitz, K., Wohlfart, D.P., Hausser, I., Sticht, C., Poschet, G., Kroll, J. (2022) Comparative Morphological, Metabolic and Transcriptome Analyses in elmo1^-/- , elmo2^-/- , and elmo3^-/- Zebrafish Mutants Identified a Functional Non-Redundancy of the Elmo Proteins. Frontiers in cell and developmental biology. 10:918529

Bogoch, Y., Jamieson-Lucy, A., Vejnar, C.E., Levy, K., Giraldez, A.J., Mullins, M.C., Elkouby, Y.M. (2022) Stage Specific Transcriptomic Analysis and Database for Zebrafish Oogenesis. Frontiers in cell and developmental biology. 10:826892

Bohaud, C., Cruz, J., Terraza, C., Barthelaix, A., Laplace-Builhé, B., Jorgensen, C., Arribat, Y., Djouad, F. (2022) Lactate metabolism coordinates macrophage response and regeneration in zebrafish. Theranostics. 12:3995-4009

Bohaud, C., Johansen, M.D., Varga, B., Contreras-Lopez, R., Barthelaix, A., Hamela, C., Sapède, D., Cloitre, T., Gergely, C., Jorgensen, C., Kremer, L., Djouad, F. (2022) Exploring Macrophage-Dependent Wound Regeneration During Mycobacterial Infection in Zebrafish. Frontiers in immunology. 13:838425

Bona, A., Seifert, M., Thünauer, R., Zodel, K., Frew, I.J., Römer, W., Walz, G., Yakulov, T.A. (2022) MARVEL-domain containing CMTM4 affects CXCR4 trafficking. Molecular biology of the cell. 33(13):ar116

Born, L.I., Andree, T., Frank, S., Hübner, J., Link, S., Langheine, M., Charlet, A., Esser, J.S., Brehm, R., Moser, M. (2022) eif4ebp3l-A New Affector of Zebrafish Angiogenesis and Heart Regeneration?. International Journal of Molecular Sciences. 23(17)

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Chun, C.Z., Remadevi, I., Schupp, M.O., Samant, G.V., Pramanik, K., Wilkinson, G.A., and Ramchandran, R. (2011) Fli+ etsrp+ Hemato-Vascular Progenitor Cells Proliferate at the Lateral Plate Mesoderm during Vasculogenesis in Zebrafish. PLoS One. 6(2):e14732

Chung, A.Y., Kim, S., Kim, H., Bae, Y.K., and Park, H.C. (2011) Microarray Screening for Genes Involved in Oligodendrocyte Differentiation in the Zebrafish CNS. Experimental Neurobiology. 20(2):85-91

Chung, M.I., Ma, A.C., Fung, T.K., and Leung, A.Y. (2011) Characterization of Sry-related HMG box group F genes in zebrafish hematopoiesis. Experimental hematology. 39(10):986-998.e5

Cinaroglu, A., Gao, C., Imrie, D., and Sadler, K.C. (2011) Atf6 plays protective and pathologic roles in fatty liver disease due to endoplasmic reticulum stress. Hepatology (Baltimore, Md.). 54(2):495-508

Clark, B.S., Winter, M., Cohen, A.R., and Link, B.A. (2011) Generation of Rab-based transgenic lines for in vivo studies of endosome biology in zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 240(11):2452-2465

Clements, W.K., Kim, A.D., Ong, K.G., Moore, J.C., Lawson, N.D., and Traver, D. (2011) A somitic Wnt16/Notch pathway specifies haematopoietic stem cells. Nature. 474(7350):220-224

Clément, A., Solnica-Krezel, L., and Gould, K.L. (2011) The Cdc14B phosphatase contributes to ciliogenesis in zebrafish. Development (Cambridge, England). 138(2):291-302

Coffindaffer-Wilson, M., Craig, M.P., and Hove, J.R. (2011) Determination of lymphatic vascular identity and developmental timecourse in zebrafish (Danio rerio). Lymphology. 44(1):1-12

Corti, P., Young, S., Chen, C.Y., Patrick, M.J., Rochon, E.R., Pekkan, K., and Roman, B.L. (2011) Interaction between alk1 and blood flow in the development of arteriovenous malformations. Development (Cambridge, England). 138(8):1573-1582

Cox, J.A., Lamora, A., Johnson, S.L., and Voigt, M.M. (2011) Diverse mechanisms for assembly of branchiomeric nerves. Developmental Biology. 357(2):305-17

Cox, J.A., McAdow, A.R., Dinitz, A.E., McCallion, A.S., Johnson, S.L., and Voigt, M.M. (2011) A zebrafish SKIV2L2-enhancer trap line provides a useful tool for the study of peripheral sensory circuit development. Gene expression patterns : GEP. 11(7):409-14

Crawford, A.D., Liekens, S., Kamuhabwa, A.R., Maes, J., Munck, S., Busson, R., Rozenski, J., Esguerra, C.V., and de Witte, P.A. (2011) Zebrafish bioassay-guided natural product discovery: isolation of angiogenesis inhibitors from East african medicinal plants. PLoS One. 6(2):e14694

Culbertson, M.D., Lewis, Z.R., and Nechiporuk, A.V. (2011) Chondrogenic and Gliogenic Subpopulations of Neural Crest Play Distinct Roles during the Assembly of Epibranchial Ganglia. PLoS One. 6(9):e24443

Curtin, E., Hickey, G., Kamel, G., Davidson, A.J., and Liao, E.C. (2011) Zebrafish wnt9a is expressed in pharyngeal ectoderm and is required for palate and lower jaw development. Mechanisms of Development. 128(1-2):104-115

Cvejic, A., Serbanovic-Canic, J., Stemple, D.L., and Ouwehand, W.H. (2011) The Role Of Meis1 In Primitive And Definitive Hematopoiesis During Zebrafish Development. Haematologica. 96(2):190-198

Cárdenas, C., Quesada, A.R., and Medina, M.A. (2011) Anti-angiogenic and anti-inflammatory properties of kahweol, a coffee diterpene. PLoS One. 6(8):e23407

Da'as, S., Teh, E.M., Dobson, J.T., Nasrallah, G.K., McBride, E.R., Wang, H., Neuberg, D.S., Marshall, J.S., Lin, T.J., and Berman, J.N. (2011) Zebrafish mast cells possess an FcepsilonRI-like receptor and participate in innate and adaptive immune responses. Developmental and comparative immunology. 35(1):125-134

Dale, R.M., and Topczewski, J. (2011) Identification of an evolutionarily conserved regulatory element of the zebrafish col2a1a gene. Developmental Biology. 357(2):518-31

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Deng, Q., Yoo, S.K., Cavnar, P.J., Green, J.M., and Huttenlocher, A. (2011) Dual roles for Rac2 in neutrophil motility and active retention in zebrafish hematopoietic tissue. Developmental Cell. 21(4):735-745

Diep, C.Q., and Davidson, A.J. (2011) Transplantation of cells directly into the kidney of adult zebrafish. Journal of visualized experiments : JoVE. (51)

Diep, C.Q., Ma, D., Deo, R.C., Holm, T.M., Naylor, R.W., Arora, N., Wingert, R.A., Bollig, F., Djordjevic, G., Lichman, B., Zhu, H., Ikenaga, T., Ono, F., Englert, C., Cowan, C.A., Hukriede, N.A., Handin, R.I., and Davidson, A.J. (2011) Identification of adult nephron progenitors capable of kidney regeneration in zebrafish. Nature. 470(7332):95-100

Ding, Y., Sun, X., Huang, W., Hoage, T., Redfield, M., Kushwaha, S., Sivasubbu, S., Lin, X., Ekker, S., and Xu, X. (2011) Haploinsufficiency of Target of Rapamycin Attenuates Cardiomyopathies in Adult Zebrafish. Circulation research. 109(6):658-69

Du, L., Xu, J., Li, X., Ma, N., Liu, Y., Peng, J., Osato, M., Zhang, W., and Wen, Z. (2011) Rumba and Haus3 are essential factors for the maintenance of hematopoietic stem/progenitor cells during zebrafish hematopoiesis. Development (Cambridge, England). 138(4):619-629

Duszynski, R.J., Topczewski, J., and LeClair, E.E. (2011) Simple, Economical Heat-Shock Devices for Zebrafish Housing Racks. Zebrafish. 8(4):211-9

Eames, B.F., Yan, Y.L., Swartz, M.E., Levic, D.S., Knapik, E.W., Postlethwait, J.H., and Kimmel, C.B. (2011) Mutations in fam20b and xylt1 Reveal That Cartilage Matrix Controls Timing of Endochondral Ossification by Inhibiting Chondrocyte Maturation. PLoS Genetics. 7(8):e1002246

Elks, P.M., van Eeden, F.J., Dixon, G., Wang, X., Reyes-Aldasoro, C.C., Ingham, P.W., Whyte, M.K., Walmsley, S.R., and Renshaw, S.A. (2011) Activation of hypoxia-inducible factor-1α (Hif-1α) delays inflammation resolution by reducing neutrophil apoptosis and reverse migration in a zebrafish inflammation model. Blood. 118(3):712-22

Ellett, F., Pase, L., Hayman, J.W., Andrianopoulos, A., and Lieschke, G.J. (2011) mpeg1 promoter transgenes direct macrophage-lineage expression in zebrafish. Blood. 117(4):e49-e56

Fang, L., Green, S.R., Baek, J.S., Lee, S.H., Ellett, F., Deer, E., Lieschke, G.J., Witztum, J.L., Tsimikas, S., and Miller, Y.I. (2011) In vivo visualization and attenuation of oxidized lipid accumulation in hypercholesterolemic zebrafish. J. Clin. Invest.. 121(12):4861-9

Faucherre, A., and López-Schier, H. (2011) Delaying gal4-driven gene expression in the zebrafish with morpholinos and gal80. PLoS One. 6(1):e16587

Fiedler, J., Jazbutyte, V., Kirchmaier, B.C., Gupta, S.K., Lorenzen, J., Hartmann, D., Galuppo, P., Kneitz, S., Pena, J.T., Sohn-Lee, C., Loyer, X., Soutschek, J., Brand, T., Tuschl, T., Heineke, J., Martin, U., Schulte-Merker, S., Ertl, G., Engelhardt, S., Bauersachs, J., and Thum, T. (2011) MicroRNA-24 Regulates Vascularity After Myocardial Infarction. Circulation. 124(6):720-30

Fish, J.E., Wythe, J.D., Xiao, T., Bruneau, B.G., Stainier, D.Y., Srivastava, D., and Woo, S. (2011) A Slit/miR-218/Robo regulatory loop is required during heart tube formation in zebrafish. Development (Cambridge, England). 138(7):1409-1419

Forrester, A.M., Grabher, C., McBride, E.R., Boyd, E.R., Vigerstad, M.H., Edgar, A., Kai, F.B., Da'as, S.I., Payne, E., Look, A.T., and Berman, J.N. (2011) NUP98-HOXA9-transgenic zebrafish develop a myeloproliferative neoplasm and provide new insight into mechanisms of myeloid leukaemogenesis. British journal of haematology. 155(2):167-81

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Fujimoto, E., Stevenson, T.J., Chien, C.B., and Bonkowsky, J.L. (2011) Identification of a Dopaminergic Enhancer Indicates Complexity in Vertebrate Dopamine Neuron Phenotype Specification. Developmental Biology. 352(2):393-404

Fujita, M., Cha, Y.R., Pham, V.N., Sakurai, A., Roman, B.L., Gutkind, J.S., and Weinstein, B.M. (2011) Assembly and patterning of the vascular network of the vertebrate hindbrain. Development (Cambridge, England). 138(9):1705-1715

Garkavtsev, I., Chauhan, V.P., Wong, H.K., Mukhopadhyay, A., Glicksman, M.A., Peterson, R.T., and Jain, R.K. (2011) Dehydro-α-lapachone, a plant product with antivascular activity. Proceedings of the National Academy of Sciences of the United States of America. 108(28):11596-601

Gautier, A., Sohm, F., Joly, J.S., Le Gac, F., and Lareyre, J.J. (2011) The Proximal Promoter Region of the Zebrafish gsdf Gene Is Sufficient to Mimic the Spatio-Temporal Expression Pattern of the Endogenous Gene in Sertoli and Granulosa Cells. Biology of reproduction. 85(6):1240-51

Ghani, S., Riemke, P., Schönheit, J., Lenze, D., Stumm, J., Hoogenkamp, M., Lagendijk, A., Heinz, S., Bonifer, C., Bakkers, J., Abdelilah-Seyfried, S., Hummel, M., and Rosenbauer, F. (2011) Macrophage development from hematopoietic stem cells requires PU.1 coordinated microRNA expression. Blood. 118(8):2275-84

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Gupta, P., Zhao, X.F., Prat, C.R., Narawane, S., Suh, C.S., Gharbi, N., Ellingsen, S., and Fjose, A. (2011) Zebrafish transgenic lines co-expressing a hybrid Gal4 activator and eGFP in tissue-restricted patterns. Gene expression patterns : GEP. 11(8):517-24

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Hami, D., Grimes, A.C., Tsai, H.J., and Kirby, M.L. (2011) Zebrafish cardiac development requires a conserved secondary heart field. Development (Cambridge, England). 138(11):2389-2398

Han, Y., Mu, Y., Li, X., Xu, P., Tong, J., Liu, Z., Ma, T., Zeng, G., Yang, S., Du, J., and Meng, A. (2011) Grhl2 deficiency impairs otic development and hearing ability in a zebrafish model of the progressive dominant hearing loss DFNA28. Human molecular genetics. 20(16):3213-26

Hans, S., Freudenreich, D., Geffarth, M., Kaslin, J., Machate, A., and Brand, M. (2011) Generation of a non-leaky heat shock-inducible Cre line for conditional Cre/lox strategies in zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 240(1):108-115

He, B., Ebarasi, L., Hultenby, K., Tryggvason, K., and Betsholtz, C. (2011) Podocin-Green Fluorescence Protein Allows Visualization and Functional Analysis of Podocytes. Journal of the American Society of Nephrology : JASN. 22(6):1019-1023

He, S., Krens, S.G., Zhan, H., Gong, Z., Hogendoorn, P.C., Spaink, H.P., and Snaar-Jagalska, B.E. (2011) A DeltaRaf1-ER-inducible oncogenic zebrafish liver cell model identifies hepatocellular carcinoma signatures. The Journal of pathology. 225(1):19-28

He, X., Yan, Y.L., Eberhart, J.K., Herpin, A., Wagner, T.U., Schartl, M., and Postlethwait, J.H. (2011) miR-196 regulates axial patterning and pectoral appendage initiation. Developmental Biology. 357(2):463-77

He, Z.H., Zhou, R., He, M.F., Lau, C.B., Yue, G.G., Ge, W., and But, P.P. (2011) Anti-angiogenic effect and mechanism of rhein from Rhizoma Rhei. Phytomedicine : international journal of phytotherapy and phytopharmacology. 18(6):470-478

Her, G.M., Hsu, C.C., Hong, J.R., Lai, C.Y., Hsu, M.C., Pang, H.W., Chan, S.K., and Pai, W.Y. (2011) Overexpression of gankyrin induces liver steatosis in zebrafish (Danio rerio). Biochimica et biophysica acta. Molecular and cell biology of lipids. 1811(9):536-48

Hernandez, P.P., Undurraga, C., Gallardo, V.E., Mackenzie, N., Allende, M.L., and Reyes, A.E. (2011) Sublethal concentrations of waterborne copper induce cellular stress and cell death in zebrafish embryos and larvae. Biological research. 44(1):7-15

Hernández-Vega, A., and Minguillón, C. (2011) The Prx1 limb enhancers: Targeted gene expression in developing zebrafish pectoral fins. Developmental Dynamics : an official publication of the American Association of Anatomists. 240(8):1977-88

Herwig, L., Blum, Y., Krudewig, A., Ellertsdottir, E., Lenard, A., and Belting, H.G., and Affolter, M. (2011) Distinct Cellular Mechanisms of Blood Vessel Fusion in the Zebrafish Embryo. Current biology : CB. 21(22):1942-1948

Hesselson, D., Anderson, R.M., and Stainier, D.Y. (2011) Suppression of Ptf1a activity induces acinar-to-endocrine conversion. Current biology : CB. 21(8):712-717

Hinits, Y., Williams, V.C., Sweetman, D., Donn, T.M., Ma, T.P., Moens, C.B., and Hughes, S.M. (2011) Defective cranial skeletal development, larval lethality and haploinsufficiency in Myod mutant zebrafish. Developmental Biology. 358(1):102-12

Horowitz, M., Milanese, C., Di Maio, R., Hu, X., Montero, L.M., Sanders, L.H., Tapias, V., Sepe, S., van Capellen, W.A., Burton, E.A., Greenamyre, T., and Mastroberardino, P.G. (2011) Single-cell redox imaging demonstrates a distinctive response of dopaminergic neurons to oxidative insults. Antioxidants & redox signaling. 15(4):855-71

Howarth, D.L., Passeri, M., and Sadler, K.C. (2011) Drinks Like a Fish: Using Zebrafish to Understand Alcoholic Liver Disease. Alcoholism, clinical and experimental research. 35(5):826-829

Hsu, R.J., Lin, C.C., Su, Y.F., and Tsai, H.J. (2011) dickkopf-3-related Gene Regulates the Expression of Zebrafish myf5 Gene through Phosphorylated p38a-dependent Smad4 Activity. The Journal of biological chemistry. 286(8):6855-6864

Hu, G., Goll, M.G., and Fisher, S. (2011) ΦC31 Integrase Mediates Efficient Cassette Exchange in the Zebrafish Germline. Developmental Dynamics : an official publication of the American Association of Anatomists. 240(9):2101-7

Huang, H.Y., Houwing, S., Kaaij, L.J., Meppelink, A., Redl, S., Gauci, S., Vos, H., Draper, B.W., Moens, C.B., Burgering, B.M., Ladurner, P., Krijgsveld, J., Berezikov, E., and Ketting, R.F. (2011) Tdrd1 acts as a molecular scaffold for Piwi proteins and piRNA targets in zebrafish. The EMBO journal. 30(16):3298-308

Huang, S., Ma, J., Liu, X., Zhang, Y., and Luo, L. (2011) Geminin is required for left-right patterning through regulating Kupffer's vesicle formation and ciliogenesis in zebrafish. Biochemical and Biophysical Research Communications. 410(2):164-9

Huang, S., Ma, J., Liu, X., Zhang, Y., and Luo, L. (2011) Retinoic acid signaling sequentially controls visceral and heart laterality in Zebrafish. The Journal of biological chemistry. 286(32):28533-43

Hunter, P.R., Nikolaou, N., Odermatt, B., Williams, P.R., Drescher, U., and Meyer, M.P. (2011) Localization of cadm2a and cadm3 proteins during development of the zebrafish nervous system. The Journal of comparative neurology. 519(11):2252-70

Hyoung Kim, J., Suk Yu, Y., Kim, K.W., and Hun Kim, J. (2011) Investigation of barrier characteristics in the hyaloid-retinal vessel of zebrafish. Journal of neuroscience research. 89(6):921-928

Ikenaga, T., Urban, J.M., Gebhart, N., Hatta, K., Kawakami, K., and Ono, F. (2011) Formation of the spinal network in zebrafish determined by domain-specific pax genes. The Journal of comparative neurology. 519(8):1562-1579

Incardona, J.P., Linbo, T.L., and Scholz, N.L. (2011) Cardiac toxicity of 5-ring polycyclic aromatic hydrocarbons is differentially dependent on the aryl hydrocarbon receptor 2 isoform during zebrafish development. Toxicology and applied pharmacology. 257(2):242-9

Ishioka, A., Jindo, T., Kawanabe, T., Hatta, K., Parvin, M.S., Nikaido, M., Kuroyanagi, Y., Takeda, H., and Yamasu, K. (2011) Retinoic acid-dependent establishment of positional information in the hindbrain was conserved during vertebrate evolution. Developmental Biology. 350(1):154-168

Issa, F.A., Mazzochi, C., Mock, A.F., and Papazian, D.M. (2011) Spinocerebellar ataxia type 13 mutant potassium channel alters neuronal excitability and causes locomotor deficits in zebrafish. The Journal of neuroscience : the official journal of the Society for Neuroscience. 31(18):6831-6841

Iwanami, N., Mateos, F., Hess, I., Riffel, N., Soza-Ried, C., Schorpp, M., and Boehm, T. (2011) Genetic Evidence for an Evolutionarily Conserved Role of IL-7 Signaling in T Cell Development of Zebrafish. Journal of immunology (Baltimore, Md. : 1950). 186(12):7060-6

Jiao, S., Dai, W., Lu, L., Liu, Y., Zhou, J., Li, Y., Korzh, V., and Duan, C. (2011) The Conserved Clusterin Gene Is Expressed in the Developing Choroid Plexus Under the Regulation of Notch But Not IGF Signaling in Zebrafish. Endocrinology. 152(5):1860-1871

Johnson, C.W., Hernandez-Lagunas, L., Feng, W., Melvin, V.S., Williams, T., and Artinger, K.B. (2011) Vgll2a is required for neural crest cell survival during zebrafish craniofacial development. Developmental Biology. 357(1):269-81

Jung, I.H., Jung, D.E., Park, Y.N., Song, S.Y., and Park, S.W. (2011) Aberrant hedgehog ligands induce progressive pancreatic fibrosis by paracrine activation of myofibroblasts and ductular cells in transgenic zebrafish. PLoS One. 6(12):e27941

Just, S., Berger, I.M., Meder, B., Backs, J., Keller, A., Marquart, S., Frese, K., Patzel, E., Rauch, G.J., Tübingen 2000 Screen Consortium, Katus, H.A., and Rottbauer, W. (2011) Protein Kinase D2 Controls Cardiac Valve Formation in Zebrafish by Regulating Histone Deacetylase 5 Activity. Circulation. 124(3):324-34

Jusuf, P.R., Almeida, A.D., Randlett, O., Joubin, K., Poggi, L., and Harris, W.A. (2011) Origin and determination of inhibitory cell lineages in the vertebrate retina. The Journal of neuroscience : the official journal of the Society for Neuroscience. 31(7):2549-2562

Kaluza, D., Kroll, J., Gesierich, S., Yao, T.P., Boon, R.A., Hergenreider, E., Tjwa, M., Rössig, L., Seto, E., Augustin, H.G., Zeiher, A.M., Dimmeler, S., and Urbich, C. (2011) Class IIb HDAC6 regulates endothelial cell migration and angiogenesis by deacetylation of cortactin. The EMBO journal. 30(20):4142-56

Kamei, H., Ding, Y., Kajimura, S., Wells, M., Chiang, P., and Duan, C. (2011) Role of IGF signaling in catch-up growth and accelerated temporal development in zebrafish embryos in response to oxygen availability. Development (Cambridge, England). 138(4):777-786

Kanther, M., Sun, X., Mühlbauer, M., Mackey, L.C., Flynn, E.J., Bagnat, M., Jobin, C., and Rawls, J.F. (2011) Microbial colonization induces dynamic temporal and spatial patterns of NF-kappaB activation in the zebrafish digestive tract. Gastroenterology. 141(1):197-207

Kapsimali, M., Kaushik, A.L., Gibon, G., Dirian, L., Ernest, S., and Rosa, F.M. (2011) Fgf signaling controls pharyngeal taste bud formation through miR-200 and Delta-Notch activity. Development (Cambridge, England). 138(16):3473-3484

Keightley, M.C., Layton, J.E., Hayman, J.W., Heath, J.K., and Lieschke, G.J. (2011) Mediator subunit 12 is required for neutrophil development in zebrafish. PLoS One. 6(8):e23845

Kent, M.L., Buchner, C., Watral, V.G., Sanders, J.L., Ladu, J., Peterson, T.S., and Tanguay, R.L. (2011) Development and maintenance of a specific pathogen-free (SPF) zebrafish research facility for Pseudoloma neurophilia. Diseases of aquatic organisms. 95(1):73-79

Kikuchi, K., Gupta, V., Wang, J., Holdway, J.E., Wills, A.A., Fang, Y., and Poss, K.D. (2011) tcf21⁺ epicardial cells adopt non-myocardial fates during zebrafish heart development and regeneration. Development (Cambridge, England). 138(14):2895-902

Kikuchi, K., Holdway, J.E., Major, R.J., Blum, N., Dahn, R.D., Begemann, G., and Poss, K.D. (2011) Retinoic Acid production by endocardium and epicardium is an injury response essential for zebrafish heart regeneration. Developmental Cell. 20(3):397-404

Kim, H.T., Lee, M.S., Choi, J.H., Jung, J.Y., Ahn, D.G., Yeo, S.Y., Choi, D.K., and Kim, C.H. (2011) The microcephaly gene aspm is involved in brain development in zebrafish. Biochemical and Biophysical Research Communications. 409(4):640-4

Kim, H.T., So, J.H., Jung, S.H., Ahn, D.G., Koh, W., Kim, N.S., Kim, S.H., Lee, S., and Kim, C.H. (2011) Cug2 is essential for normal mitotic control and CNS development in zebrafish. BMC Developmental Biology. 11(1):49

Kim, S., Chung, A.Y., Kim, D., Kim, Y.S., Kim, H.S., Kwon, H.W., Huh, T.L., Park, H.C. (2011) Tcf3 function is required for the inhibition of oligodendroglial fate specification in the spinal cord of zebrafish embryos. Molecules and cells. 32(4):383-8

Kim, S.H., Speirs, C.K., Solnica-Krezel, L., and Ess, K.C. (2011) Zebrafish model of tuberous sclerosis complex reveals cell-autonomous and non-cell-autonomous functions of mutant tuberin. Disease models & mechanisms. 4(2):255-267

Kim, S.J., Shin, J.Y., Lee, K.D., Bae, Y.K., Choi, I.J., Park, S.H., and Chun, K.H. (2011) Galectin-3 Facilitates Cell Motility in Gastric Cancer by Up-Regulating Protease-Activated Receptor-1(PAR-1) and Matrix Metalloproteinase-1(MMP-1). PLoS One. 6(9):e25103

Kimmel, R.A., Onder, L., Wilfinger, A., Ellertsdottir, E., and Meyer, D. (2011) Requirement for Pdx1 in specification of latent endocrine progenitors in zebrafish. BMC Biology. 9(1):75

Kinkhabwala, A., Riley, M., Koyama, M., Monen, J., Satou, C., Kimura, Y., Higashijima, S.I., and Fetcho, J. (2011) A structural and functional ground plan for neurons in the hindbrain of zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 108(3):1164-1169

Kishimoto, N., Alfaro-Cervello, C., Shimizu, K., Asakawa, K., Urasaki, A., Nonaka, S., Kawakami, K., Garcia-Verdugo, J.M., and Sawamoto, K. (2011) Migration of neuronal precursors from the telencephalic ventricular zone into the olfactory bulb in adult zebrafish. The Journal of comparative neurology. 519(17):3549-65

Klein, C., Mikutta, J., Krueger, J., Scholz, K., Brinkmann, J., Liu, D., Veerkamp, J., Siegel, D., Abdelilah-Seyfried, S., and le Noble, F. (2011) Neuron navigator 3a regulates liver organogenesis during zebrafish embryogenesis. Development (Cambridge, England). 138(10):1935-1945

Knight, R.D., Mebus, K., d'Angelo, A., Yokoya, K., Heanue, T., and Roehl, H. (2011) Ret signalling integrates a craniofacial muscle module during development. Development (Cambridge, England). 138(10):2015-2024

Knopf, F., Hammond, C., Chekuru, A., Kurth, T., Hans, S., Weber, C.W., Mahatma, G., Fisher, S., Brand, M., Schulte-Merker, S., and Weidinger, G. (2011) Bone Regenerates via Dedifferentiation of Osteoblasts in the Zebrafish Fin. Developmental Cell. 20(5):713-724

Korzh, S., Winata, C.L., Zheng, W., Yang, S., Yin, A., Ingham, P., Korzh, V., and Gong, Z. (2011) The interaction of epithelial Ihha and mesenchymal Fgf10 in zebrafish esophageal and swimbladder development. Developmental Biology. 359(2):262-76

Koshimizu, E., Imamura, S., Qi, J., Toure, J., Valdez, D.M., Carr, C.E., Hanai, J., and Kishi, S. (2011) Embryonic senescence and laminopathies in a progeroid zebrafish model. PLoS One. 6(3):e17688

Koyama, M., Kinkhabwala, A., Satou, C., Higashijima, S.I., and Fetcho, J. (2011) Mapping a sensory-motor network onto a structural and functional ground plan in the hindbrain. Proceedings of the National Academy of Sciences of the United States of America. 108(3):1170-1175

Krens, S.F., Möllmert, S., and Heisenberg, C.P. (2011) Enveloping cell-layer differentiation at the surface of zebrafish germ-layer tissue explants. Proceedings of the National Academy of Sciences of the United States of America. 108(3):E9-E10

Kroehne, V., Freudenreich, D., Hans, S., Kaslin, J., and Brand, M. (2011) Regeneration of the adult zebrafish brain from neurogenic radial glia-type progenitors. Development (Cambridge, England). 138(22):4831-4841

Krueger, J., Liu, D., Scholz, K., Zimmer, A., Shi, Y., Klein, C., Siekmann, A., Schulte-Merker, S., Cudmore, M., Ahmed, A., le Noble, F. (2011) Flt1 acts as a negative regulator of tip cell formation and branching morphogenesis in the zebrafish embryo. Development (Cambridge, England). 138(10):2111-2120

Kubota, A., Stegeman, J.J., Woodin, B.R., Iwanaga, T., Harano, R., Peterson, R.E., Hiraga, T., and Teraoka, H. (2011) Role of zebrafish cytochrome P450 CYP1C genes in the reduced mesencephalic vein blood flow caused by activation of AHR2. Toxicology and applied pharmacology. 253(3):244-52

Kuo, M.W., Wang, C.H., Wu, H.C., Chang, S.J., and Chuang, Y.J. (2011) Soluble THSD7A Is an N-Glycoprotein That Promotes Endothelial Cell Migration and Tube Formation in Angiogenesis. PLoS One. 6(12):e29000

Labalette, C., Bouchoucha, Y.X., Wassef, M.A., Gongal, P.A., Le Men, J., Becker, T., Gilardi-Hebenstreit, P., and Charnay, P. (2011) Hindbrain patterning requires fine-tuning of early krox20 transcription by Sprouty 4. Development (Cambridge, England). 138(2):317-326

Lai, Y.C., Pan, K.T., Chang, G.F., Hsu, C.H., Khoo, K.H., Hung, C.H., Jiang, Y.J., Ho, F.M., and Meng, T.C. (2011) Nitrite-Mediated S-Nitrosylation of Caspase-3 Prevents Hypoxia-Induced Endothelial Barrier Dysfunction. Circulation research. 109(12):1375-86

Lakshmikanthan, S., Sobczak, M., Chun, C., Henschel, A., Dargatz, J., Ramchandran, R., and Chrzanowska-Wodnicka, M. (2011) Rap1 promotes VEGFR2 activation and angiogenesis by a mechanism involving integrin alpha v beta 3. Blood. 118(7):2015-26

Lam, K.H., Alex, D., Lam, I.K., Tsui, S.K., Yang, Z.F., and Lee, S.M. (2011) Nobiletin, a polymethoxylated flavonoid from citrus, shows anti-angiogenic activity in a zebrafish in vivo model and HUVEC in vitro model. Journal of cellular biochemistry. 112(11):3313-21

Lam, S.H., Hlaing, M.M., Zhang, X., Yan, C., Duan, Z., Zhu, L., Ung, C.Y., Mathavan, S., Ong, C.N., and Gong, Z. (2011) Toxicogenomic and phenotypic analyses of bisphenol-a early-life exposure toxicity in zebrafish. PLoS One. 6(12):e28273

Langenbacher, A.D., Nguyen, C.T., Cavanaugh, A.M., Huang, J., Lu, F., and Chen, J.N. (2011) The PAF1 complex differentially regulates cardiomyocyte specification. Developmental Biology. 353(1):19-28

Laux, D.W., Febbo, J.A., and Roman, B.L. (2011) Dynamic analysis of BMP-responsive smad activity in live zebrafish embryos. Developmental Dynamics : an official publication of the American Association of Anatomists. 240(3):682-694

Lazic, S., and Scott, I.C. (2011) Mef2cb regulates late myocardial cell addition from a second heart field-like population of progenitors in zebrafish. Developmental Biology. 354(1):123-133

Li, S., Lou, S., Lei, B.U., Chan, T.F., Kwan, Y.W., Chan, S.W., Leung, G.P., Tsui, S.K., and Lee, S.M. (2011) Transcriptional profiling of angiogenesis activities of calycosin in zebrafish. Molecular Biosystems. 7(11):3112-21

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Lin, S., Zhao, Y., Xia, T., Meng, H., Ji, Z., Liu, R., George, S., Xiong, S., Wang, X., Zhang, H., Pokhrel, S., Mädler, L., Damoiseaux, R., Lin, S., and Nel, A.E. (2011) High Content Screening in Zebrafish Speeds up Hazard Ranking of Transition Metal Oxide Nanoparticles. ACS nano. 5(9):7284-95

Liu, C.L., Cheng, L., Kwok, H.F., Ko, C.H., Lau, T.W., Koon, C.M., Zhao, M., Lau, C.P., Lau, K.M., Wong, C.W., Leung, P.C., Fung, K.P., and Lau, C.B. (2011) Bioassay-guided isolation of norviburtinal from the root of Rehmannia glutinosa, exhibited angiogenesis effect in zebrafish embryo model. Journal of ethnopharmacology. 137(3):1323-7

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Liu, D.W., Hsu, C.H., Tsai, S.M., Hsiao, C.D., and Wang, W.P. (2011) A variant of fibroblast growth factor receptor 2 (fgfr2) regulates left-right asymmetry in zebrafish. PLoS One. 6(7):e21793

Liu, H., Rigamonti, D., Badr, A., and Zhang, J. (2011) Ccm1 Regulates Microvascular Morphogenesis during Angiogenesis. Journal of vascular research. 48(2):130-140

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Liu, W., Morito, D., Takashima, S., Mineharu, Y., Kobayashi, H., Hitomi, T., Hashikata, H., Matsuura, N., Yamazaki, S., Toyoda, A., Kikuta, K., Takagi, Y., Harada, K.H., Fujiyama, A., Herzig, R., Krischek, B., Zou, L., Kim, J.E., Kitakaze, M., Miyamoto, S., Nagata, K., Hashimoto, N., and Koizumi, A. (2011) Identification of RNF213 as a Susceptibility Gene for Moyamoya Disease and Its Possible Role in Vascular Development. PLoS One. 6(7):e22542

Lou, X., Deshwar, A.R., Crump, J.G., and Scott, I.C. (2011) Smarcd3b and Gata5 promote a cardiac progenitor fate in the zebrafish embryo. Development (Cambridge, England). 138(15):3113-23

Low, S.E., Amburgey, K., Horstick, E., Linsley, J., Sprague, S.M., Cui, W.W., Zhou, W., Hirata, H., Saint-Amant, L., Hume, R.I., and Kuwada, J.Y. (2011) TRPM7 Is Required within Zebrafish Sensory Neurons for the Activation of Touch-Evoked Escape Behaviors. The Journal of neuroscience : the official journal of the Society for Neuroscience. 31(32):11633-11644

Ludwig, M., Palha, N., Torhy, C., Briolat, V., Colucci-Guyon, E., Brémont, M., Herbomel, P., Boudinot, P., and Levraud, J.P. (2011) Whole-Body Analysis of a Viral Infection: Vascular Endothelium is a Primary Target of Infectious Hematopoietic Necrosis Virus in Zebrafish Larvae. PLoS pathogens. 7(2):e1001269

Lukowski, C.M., Drummond, D.L., and Waskiewicz, A.J. (2011) Pbx-dependent regulation of lbx gene expression in developing zebrafish embryos. Genome. 54(12):973-85

Lupo, G., Gestri, G., O'Brien, M., Denton, R.M., Chandraratna, R.A., Ley, S.V., Harris, W.A., and Wilson, S.W. (2011) Retinoic acid receptor signaling regulates choroid fissure closure through independent mechanisms in the ventral optic cup and periocular mesenchyme. Proceedings of the National Academy of Sciences of the United States of America. 108(21):8698-8703

Ma, A.C., Fung, T.K., Lin, R.H., Chung, M.I., Yang, D., Ekker, S.C., and Leung, A.Y. (2011) Methionine aminopeptidase 2 is required for HSC initiation and proliferation. Blood. 118(20):5448-57

Ma, D., Zhang, J., Lin, H.F., Italiano, J., and Handin, R.I. (2011) The identification and characterization of zebrafish hematopoietic stem cells. Blood. 118(2):289-97

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Marrero-Ponce, Y., Siverio-Mota, D., Gálvez-Llompart, M., Recio, M.C., Giner, R.M., García-Domènech, R., Torrens, F., Arán, V.J., Cordero-Maldonado, M.L., Esguera, C.V., de Witte, P.A., and Crawford, A.D. (2011) Discovery of novel anti-inflammatory drug-like compounds by aligning in silico and in vivo screening: The nitroindazolinone chemotype. European Journal of Medicinal Chemistry. 46(12):5736-53

Matsui, T., Thitamadee, S., Murata, T., Kakinuma, H., Nabetani, T., Hirabayashi, Y., Hirate, Y., Okamoto, H., and Bessho, Y. (2011) Canopy1, a positive feedback regulator of FGF signaling, controls progenitor cell clustering during Kupffer's vesicle organogenesis. Proceedings of the National Academy of Sciences of the United States of America. 108(24):9881-6

Maurya, A.K., Tan, H., Souren, M., Wang, X., Wittbrodt, J., and Ingham, P.W. (2011) Integration of Hedgehog and BMP signalling by the engrailed2a gene in the zebrafish myotome. Development (Cambridge, England). 138(4):755-765

McGinty, J., Taylor, H.B., Chen, L., Bugeon, L., Lamb, J.R., Dallman, M.J., and French, P.M. (2011) In vivo fluorescence lifetime optical projection tomography. Biomedical Optics Express. 2(5):1340-1350

McGraw, H.F., Drerup, C.M., Culbertson, M.D., Linbo, T., Raible, D.W., and Nechiporuk, A.V. (2011) Lef1 is required for progenitor cell identity in the zebrafish lateral line primordium. Development (Cambridge, England). 138(18):3921-3930

Mickoleit, M., Banisch, T.U., and Raz, E. (2011) Regulation of hub mRNA stability and translation by miR430 and the dead end protein promotes preferential expression in zebrafish primordial germ cells. Developmental Dynamics : an official publication of the American Association of Anatomists. 240(3):695-703

Miskinyte, S., Butler, M.G., Hervé, D., Sarret, C., Nicolino, M., Petralia, J.D., Bergametti, F., Arnould, M., Pham, V.N., Gore, A.V., Spengos, K., Gazal, S., Woimant, F., Steinberg, G.K., Weinstein, B.M., and Tournier-Lasserve, E. (2011) Loss of BRCC3 Deubiquitinating Enzyme Leads to Abnormal Angiogenesis and Is Associated with Syndromic Moyamoya. American journal of human genetics. 88(6):718-28

Miyasaka, K.Y., Kida, Y.S., Banjo, T., Ueki, Y., Nagayama, K., Matsumoto, T., Sato, M., and Ogura, T. (2011) Heartbeat regulates cardiogenesis by suppressing retinoic acid signaling via expression of miR-143. Mechanisms of Development. 128(1-2):18-28

Mizoguchi, T., Togawa, S., Kawakami, K., and Itoh, M. (2011) Neuron and sensory epithelial cell fate is sequentially determined by notch signaling in zebrafish lateral line development. The Journal of neuroscience : the official journal of the Society for Neuroscience. 31(43):15522-15530

Mo, W., and Nicolson, T. (2011) Both pre- and postsynaptic activity of nsf prevents degeneration of hair-cell synapses. PLoS One. 6(11):e27146

Monteiro, R., Pouget, C., and Patient, R. (2011) The gata1/pu.1 lineage fate paradigm varies between blood populations and is modulated by tif1γ. The EMBO journal. 30(6):1093-1103

Moon, I.S., So, J.H., Jung, Y.M., Lee, W.S., Kim, E.Y., Kim, C.H., and Choi, J.Y. (2011) Fucoidan promotes mechanosensory hair cell regeneration following amino glycoside-induced cell death. Hearing Research. 282(1-2):236-42

Moshal, K.S., Ferri-Lagneau, K.F., Haider, J., Pardhanani, P., and Leung, T. (2011) Discriminating Different Cancer Cells Using a Zebrafish in Vivo Assay. Cancers. 3(4):4102–4113

Mosimann, C., Kaufman, C.K., Li, P., Pugach, E.K., Tamplin, O.J., and Zon, L.I. (2011) Ubiquitous transgene expression and Cre-based recombination driven by the ubiquitin promoter in zebrafish. Development (Cambridge, England). 138(1):169-177

Murphy, D.A., Diaz, B., Bromann, P.A., Tsai, J.H., Kawakami, Y., Maurer, J., Stewart, R.A., Izpisúa-Belmonte, J.C., and Courtneidge, S.A. (2011) A Src-Tks5 Pathway Is Required for Neural Crest Cell Migration during Embryonic Development. PLoS One. 6(7):e22499

Muto, A., Ohkura, M., Kotani, T., Higashijima, S.I., Nakai, J., and Kawakami, K. (2011) Genetic visualization with an improved GCaMP calcium indicator reveals spatiotemporal activation of the spinal motor neurons in zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 108(13):5425-5430

März, M., Schmidt, R., Rastegar, S., and Strähle, U. (2011) Regenerative response following stab injury in the adult zebrafish telencephalon. Developmental Dynamics : an official publication of the American Association of Anatomists. 240(9):2221-2231

Müller, T., Rumpel, E., Hradetzky, S., Bollig, F., Wegner, H., Blumenthal, A., Greinacher, A., Endlich, K., and Endlich, N. (2011) Non-muscle myosin IIA is required for the development of the zebrafish glomerulus. Kidney International. 80(10):1055-63

Narayanan, A., Thompson, S.A., Lee, J.J., and Lekven, A.C. (2011) A transgenic wnt8a:PAC reporter reveals biphasic regulation of vertebrate mesoderm development. Developmental Dynamics : an official publication of the American Association of Anatomists. 240(4):898-907

Nguyen, A.T., Emelyanov, A., Koh, C.H., Spitsbergen, J.M., Lam, S.H., Mathavan, S., Parinov, S., and Gong, Z. (2011) A high level of liver-specific expression of oncogenic Kras^V12 drives robust liver tumorigenesis in transgenic zebrafish. Disease models & mechanisms. 4(6):801-13

Nishibori, Y., Katayama, K., Parikka, M., Oddsson, A., Nukui, M., Hultenby, K., Wernerson, A., He, B., Ebarasi, L., Raschperger, E., Norlin, J., Uhlén, M., Patrakka, J., Betsholtz, C., and Tryggvason, K. (2011) Glcci1 Deficiency Leads to Proteinuria. Journal of the American Society of Nephrology : JASN. 22(11):2037-46

Oehlers, S.H., Flores, M.V., Chen, T., Hall, C.J., Crosier, K.E., and Crosier, P.S. (2011) Topographical distribution of antimicrobial genes in the zebrafish intestine. Developmental and comparative immunology. 35(3):385-391

Oehlers, S.H., Flores, M.V., Hall, C.J., Swift, S., Crosier, K.E., and Crosier, P.S. (2011) The inflammatory bowel disease (IBD) susceptibility genes NOD1 and NOD2 have conserved anti-bacterial roles in zebrafish. Disease models & mechanisms. 4(6):832-41

Oehlers, S.H., Flores, M.V., Okuda, K.S., Hall, C.J., Crosier, K.E., and Crosier, P.S. (2011) A chemical enterocolitis model in zebrafish larvae that is dependent on microbiota and responsive to pharmacological agents. Developmental Dynamics : an official publication of the American Association of Anatomists. 240(1):288-298

Oggier, D.M., Lenard, A., Küry, M., Höger, B., Affolter, M., and Fent, K. (2011) Effects of the protein kinase inhibitor PKC412 on gene expression and link to physiological effects in zebrafish Danio rerio eleuthero-embryos. Toxicological sciences : an official journal of the Society of Toxicology. 119(1):104-115

Onuma, T.A., Ding, Y., Abraham, E., Zohar, Y., Ando, H., and Duan, C. (2011) Regulation of Temporal and Spatial Organization of Newborn GnRH Neurons by IGF Signaling in Zebrafish. The Journal of neuroscience : the official journal of the Society for Neuroscience. 31(33):11814-11824

Opitz, R., Maquet, E., Zoenen, M., Dadhich, R., and Costagliola, S. (2011) TSH Receptor Function Is Required for Normal Thyroid Differentiation in Zebrafish. Molecular endocrinology (Baltimore, Md.). 25(9):1579-99

Palencia-Desai, S., Kohli, V., Kang, J., Chi, N.C., Black, B.L., and Sumanas, S. (2011) Vascular endothelial and endocardial progenitors differentiate as cardiomyocytes in the absence of Etsrp/Etv2 function. Development (Cambridge, England). 138(21):4721-4732

Pan, C.Y., Peng, K.C., Lin, C.H., and Chen, J.Y. (2011) Transgenic expression of tilapia hepcidin 1-5 and shrimp chelonianin in zebrafish and their resistance to bacterial pathogens. Fish & shellfish immunology. 31(2):275-85

Pathak, N., Austin, C.A., and Drummond, I.A. (2011) Tubulin tyrosine ligase like genes TTLL3 and TTLL6 maintain zebrafish cilia structure and motility. The Journal of biological chemistry. 286(13):11685-11695

Patra, C., Diehl, F., Ferrazzi, F., van Amerongen, M.J., Novoyatleva, T., Schaefer, L., Mühlfeld, C., Jungblut, B., and Engel, F.B. (2011) Nephronectin regulates atrioventricular canal differentiation via Bmp4-Has2 signaling in zebrafish. Development (Cambridge, England). 138(20):4499-4509

Patra, C.R., Kim, J.H., Pramanik, K., d'Uscio, L.V., Patra, S., Pal, K., Ramchandran, R., Strano, M.S., and Mukhopadhyay, D. (2011) Reactive Oxygen Species Driven Angiogenesis by Inorganic Nanorods. Nano Letters. 11(11):4932-8

Paul, T.A., Rovnak, J., Quackenbush, S.L., Whitlock, K., Zhan, H., Gong, Z., Spitsbergen, J., Bowser, P.R., and Casey, J.W. (2011) Transgenic Expression of Walleye Dermal Sarcoma Virus rv-cyclin (orfA) in Zebrafish does not Result in Tissue Proliferation. Marine biotechnology (New York, N.Y.). 13(2):142-150

Payne, E.M., Bolli, N., Rhodes, J., Abdel-Wahab, O.I., Levine, R., Hedvat, C.V., Stone, R., Khanna-Gupta, A., Sun, H., Kanki, J.P., Gazda, H.T., Beggs, A.H., Cotter, F.E., and Look, A.T. (2011) Ddx18 is essential for cell cycle progression in zebrafish hematopoietic cells and is mutated in human acute myeloid leukemia. Blood. 118(4):903-15

Peravali, R., Gehrig, J., Giselbrecht, S., Lutjohann, D.S., Hadzhiev, Y., Muller, F., and Liebel, U. (2011) Automated feature detection and imaging for high-resolution screening of zebrafish embryos. Biotechniques. 50(5):319-324

Peshkovsky, C., Totong, R., and Yelon, D. (2011) Dependence of cardiac trabeculation on neuregulin signaling and blood flow in zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 240(2):446-456

Peukert, D., Weber, S., Lumsden, A., and Scholpp, S. (2011) Lhx2 and lhx9 determine neuronal differentiation and compartition in the caudal forebrain by regulating wnt signaling. PLoS Biology. 9(12):e1001218

Pikulkaew, S., Benato, F., Celeghin, A., Zucal, C., Skobo, T., Colombo, L., and Dalla Valle , L. (2011) The knockdown of maternal glucocorticoid receptor mRNA alters embryo development in zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 240(4):874-889

Pluskota, E., Dowling, J.J., Gordon, N., Golden, J.A., Szpak, D., West, X.Z., Nestor, C., Ma, Y.Q., Bialkowska, K., Byzova, T., and Plow, E.F. (2011) The integrin co-activator Kindlin-2 plays a critical role in angiogenesis in mice and zebrafish. Blood. 117(18):4978-4987

Poulain, M., and Ober, E.A. (2011) Interplay between Wnt2 and Wnt2bb controls multiple steps of early foregut-derived organ development. Development (Cambridge, England). 138(16):3557-68

Powell, G.T., and Wright, G.J. (2011) Jamb and jamc are essential for vertebrate myocyte fusion. PLoS Biology. 9(12):e1001216

Pozzoli, O., Vella, P., Iaffaldano, G., Parente, V., Devanna, P., Lacovich, M., Lamia, C.L., Fascio, U., Longoni, D., Cotelli, F., Capogrossi, M.C., and Pesce, M. (2011) Endothelial Fate and Angiogenic Properties of Human CD34+ Progenitor Cells in Zebrafish. Arterioscler. Thromb. Vasc. Biol.. 31(7):1589-97

Prasad, M.K., Reed, X., Gorkin, D.U., Cronin, J.C., McAdow, A.R., Chain, K., Hodonsky, C.J., Jones, E.A., Svaren, J.P., Antonellis, A., Johnson, S.L., Loftus, S.K., Pavan, W.J., and McCallion, A.S. (2011) SOX10 directly modulates ERBB3 transcription via an intronic neural crest enhancer. BMC Developmental Biology. 11(1):40

Qin, Z., Kidd, A.R., Thomas, J.L., Poss, K.D., Hyde, D.R., Raymond, P.A., and Thummel, R. (2011) FGF signaling regulates rod photoreceptor cell maintenance and regeneration in zebrafish. Experimental Eye Research. 93(5):726-34

Quillien, A., Blanco-Sanchez, B., Halluin, C., Moore, J.C., Lawson, N.D., Blader, P., and Cau, E. (2011) BMP signaling orchestrates photoreceptor specification in the zebrafish pineal gland in collaboration with Notch. Development (Cambridge, England). 138(11):2293-2302

Ramachandran, R., Zhao, X.F., and Goldman, D. (2011) Ascl1a/Dkk/ beta -catenin signaling pathway is necessary and glycogen synthase kinase-3 beta inhibition is sufficient for zebrafish retina regeneration. Proceedings of the National Academy of Sciences of the United States of America. 108(38):15858-63

Rehn, K., Wong, K.S., Balciunas, D., and Sumanas, S. (2011) Zebrafish enhancer trap line recapitulates embryonic aquaporin 1a expression pattern in vascular endothelial cells. The International journal of developmental biology. 55(6):613-618

Renaud, O., Herbomel, P., and Kissa, K. (2011) Studying cell behavior in whole zebrafish embryos by confocal live imaging: application to hematopoietic stem cells. Nature Protocols. 6(12):1897-1904

Rieger, S., and Sagasti, A. (2011) Hydrogen peroxide promotes injury-induced peripheral sensory axon regeneration in the zebrafish skin. PLoS Biology. 9(5):e1000621

Ro, H., and Dawid, I.B. (2011) Modulation of Tcf3 repressor complex composition regulates cdx4 expression in zebrafish. The EMBO journal. 30(14):2894-907

Rooryck, C., Diaz-Font, A., Osborn, D.P., Chabchoub, E., Hernandez-Hernandez, V., Shamseldin, H., Kenny, J., Waters, A., Jenkins, D., Kaissi, A.A., Leal, G.F., Dallapiccola, B., Carnevale, F., Bitner-Glindzicz, M., Lees, M., Hennekam, R., Stanier, P., Burns, A.J., Peeters, H., Alkuraya, F.S., and Beales, P.L. (2011) Mutations in lectin complement pathway genes COLEC11 and MASP1 cause 3MC syndrome. Nature Genetics. 43(3):197-203

Rothschild, S.C., Francescatto, L., Drummond, I.A., and Tombes, R.M. (2011) CaMK-II is a PKD2 target that promotes pronephric kidney development and stabilizes cilia. Development (Cambridge, England). 138(16):3387-97

Rouleau, M., Saxena, V., Rodrigue, A., Paquet, E.R., Gagnon, A., Hendzel, M.J., Masson, J.Y., Ekker, M., and Poirier, G.G. (2011) A Key Role for Poly(ADP-Ribose) Polymerase 3 in Ectodermal Specification and Neural Crest Development. PLoS One. 6(1):e15834

Rovira, M., Huang, W., Yusuff, S., Shim, J.S., Ferrante, A.A., Liu, J.O., and Parsons, M.J. (2011) Chemical screen identifies FDA-approved drugs and target pathways that induce precocious pancreatic endocrine differentiation. Proceedings of the National Academy of Sciences of the United States of America. 108(48):19264-9

Row, R.H., Maître, J.L., Martin, B.L., Stockinger, P., Heisenberg, C.P., and Kimelman, D. (2011) Completion of the epithelial to mesenchymal transition in zebrafish mesoderm requires Spadetail. Developmental Biology. 354(1):102-110

Royo, J.L., Hidalgo, C., Roncero, Y., Seda, M.A., Akalin, A., Lenhard, B., Casares, F., and Gómez-Skarmeta, J.L. (2011) Dissecting the transcriptional regulatory properties of human chromosome 16 highly conserved non-coding regions. PLoS One. 6(9):e24824

Rudner, L.A., Brown, K.H., Dobrinski, K.P., Bradley, D.F., Garcia, M.I., Smith, A.C., Downie, J.M., Meeker, N.D., Look, A.T., Downing, J.R., Gutierrez, A., Mullighan, C.G., Schiffman, J.D., Lee, C., Trede, N.S., and Frazer, J.K. (2011) Shared acquired genomic changes in zebrafish and human T-ALL. Oncogene. 30(41):4289-96

Runtuwene, V., van Eekelen, M., Overvoorde, J., Rehmann, H., Yntema, H.G., Nillesen, W.M., van Haeringen, A., van der Burgt, I., Burgering, B., and den Hertog, J. (2011) Noonan syndrome gain-of-function mutations in NRAS cause zebrafish gastrulation defects. Disease models & mechanisms. 4(3):393-399

Saito, K., Siegfried, K.R., Nüsslein-Volhard, C., and Sakai, N. (2011) Isolation and cytogenetic characterization of zebrafish meiotic prophase I mutants. Developmental Dynamics : an official publication of the American Association of Anatomists. 240(7):1779-92

Schnabel, K., Wu, C.C., Kurth, T., and Weidinger, G. (2011) Regeneration of cryoinjury induced necrotic heart lesions in zebrafish is associated with epicardial activation and cardiomyocyte proliferation. PLoS One. 6(4):e18503

Scott, J.A., Incardona, J.P., Pelkki, K., Shepardson, S., and Hodson, P.V. (2011) AhR2-mediated, CYP1A-independent cardiovascular toxicity in zebrafish (Danio rerio) embryos exposed to retene. Aquatic toxicology (Amsterdam, Netherlands). 101(1):165-174

Sedletcaia, A., and Evans, T. (2011) Heart chamber size in zebrafish is regulated redundantly by duplicated tbx2 genes. Developmental Dynamics : an official publication of the American Association of Anatomists. 240(6):1548-1557

Seger, C., Hargrave, M., Wang, X., Chai, R.J., Elworthy, S., and Ingham, P.W. (2011) Analysis of Pax7 expressing myogenic cells in zebrafish muscle development, injury, and models of disease. Developmental Dynamics : an official publication of the American Association of Anatomists. 240(11):2440-51

Seiler, C., and Pack, M. (2011) Transgenic labeling of the zebrafish pronephric duct and tubules using a promoter from the enpep gene. Gene expression patterns : GEP. 11(1-2):118-121

Shakes, L.A., Abe, G., Eltayeb, M.A., Wolf, H.M., Kawakami, K., and Chatterjee, P.K. (2011) Generating libraries of iTol2-end insertions at BAC ends using loxP and lox511 Tn10 transposons. BMC Genomics. 12(1):351

Sheets, L., Trapani, J.G., Mo, W., Obholzer, N., and Nicolson, T. (2011) Ribeye is required for presynaptic CaV1.3a channel localization and afferent innervation of sensory hair cells. Development (Cambridge, England). 138(7):1309-1319

Shin, D., Lee, Y., Poss, K.D., and Stainier, D.Y. (2011) Restriction of hepatic competence by Fgf signaling. Development (Cambridge, England). 138(7):1339-1348

Simões, F.C., Peterkin, T., and Patient, R. (2011) Fgf differentially controls cross-antagonism between cardiac and haemangioblast regulators. Development (Cambridge, England). 138(15):3235-3245

Skaar, K.S., Nóbrega, R.H., Magaraki, A., Olsen, L.C., Schulz, R.W., and Male, R. (2011) Proteolytically Activated, Recombinant Anti-Mullerian Hormone Inhibits Androgen Secretion, Proliferation, and Differentiation of Spermatogonia in Adult Zebrafish Testis Organ Cultures. Endocrinology. 152(9):3527-40

Slanchev, K., Pütz, M., Schmitt, A., Kramer-Zucker, A., and Walz, G. (2011) Nephrocystin-4 is required for pronephric duct-dependent cloaca formation in zebrafish. Human molecular genetics. 20(16):3119-28

Smith, K.A., Lagendijk, A.K., Courtney, A.D., Chen, H., Paterson, S., Hogan, B.M., Wicking, C., and Bakkers, J. (2011) Transmembrane protein 2 (Tmem2) is required to regionally restrict atrioventricular canal boundary and endocardial cushion development. Development (Cambridge, England). 138(19):4193-4198

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Hong, S.J., Wan, J.B., Zhang, Y., Hu, G., Lin, H.C., Seto, S.W., Kwan, Y.W., Lin, Z.X., Wang, Y.T., and Lee, S.M. (2009) Angiogenic effect of saponin extract from Panax notoginseng on HUVECs in vitro and zebrafish in vivo. Phytotherapy research : PTR. 23(5):677-686

Hooper, A.T., Shmelkov, S.V., Gupta, S., Milde, T., Bambino, K., Gillen, K., Goetz, M., Chavala, S., Baljevic, M., Murphy, A.J., Valenzuela, D.M., Gale, N.W., Thurston, G., Yancopoulos, G.D., Vahdat, L., Evans, T., and Rafii, S. (2009) Angiomodulin Is a Specific Marker of Vasculature and Regulates Vascular Endothelial Growth Factor-A-Dependent Neoangiogenesis. Circulation research. 105(2):201-208

Huang, C.C., Wang, T.C., Lin, B.H., Wang, Y.W., Johnson, S.L., and Yu, J. (2009) Collagen IX is Required for the Integrity of Collagen II Fibrils and the Regulation of Vascular Plexus Formation in Zebrafish Caudal Fins. Developmental Biology. 332(2):360-370

Huang, H.Y., Dai, E.S., Liu, J.T., Tu, C.T., Yang, T.C., and Tsai, H.J. (2009) The embryonic expression patterns and the knockdown phenotypes of zebrafish ADP-ribosylation factor-like 6 interacting protein gene. Developmental Dynamics : an official publication of the American Association of Anatomists. 238(1):232-240

Jacoby, A.S., Busch-Nentwich, E., Bryson-Richardson, R.J., Hall, T.E., Berger, J., Berger, S., Sonntag, C., Sachs, C., Geisler, R., Stemple, D.L., and Currie, P.D. (2009) The zebrafish dystrophic mutant softy maintains muscle fibre viability despite basement membrane rupture and muscle detachment. Development (Cambridge, England). 136(19):3367-3376

Jang, G.H., Park, I.S., Lee, S.H., Huh, T.L., and Lee, Y.M. (2009) Malachite green induces cardiovascular defects in developing zebrafish (Danio rerio) embryos by blocking VEGFR-2 signaling. Biochemical and Biophysical Research Communications. 382(3):486-491

Jia, S., Nakaya, N., and Piatigorsky, J. (2009) Differential expression patterns and developmental roles of duplicated scinderin-like genes in zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 238(10):2633-2640

Jin, D., Ni, T.T., Hou, J., Rellinger, E., and Zhong, T.P. (2009) Promoter analysis of ventricular myosin heavy chain (vmhc) in zebrafish embryos. Developmental Dynamics : an official publication of the American Association of Anatomists. 238(7):1760-1767

Jin, H., Sood, R., Xu, J., Zhen, F., English, M.A., Liu, P.P., and Wen, Z. (2009) Definitive hematopoietic stem/progenitor cells manifest distinct differentiation output in the zebrafish VDA and PBI. Development (Cambridge, England). 136(4):647-654

Johnson, H.J., Gandhi, M.J., Shafizadeh, E., Langer, N.B., Pierce, E.L., Paw, B.H., Gilligan, D.M., and Drachman, J.G. (2009) The in vivo inactivation of MASTL kinase results in thrombocytopenia. Experimental hematology. 37(8):901-908

Ju, B., Spitsbergen, J., Eden, C.J., Taylor, M.R., and Chen, W. (2009) Co-activation of hedgehog and AKT pathways promote tumorigenesis in zebrafish. Molecular Cancer. 8:40

Jusuf, P.R., and Harris, W.A. (2009) Ptf1a is expressed transiently in all types of amacrine cells in the embryonic zebrafish retina. Neural Development. 4:34

Kalén, M., Wallgard, E., Asker, N., Nasevicius, A., Athley, E., Billgren, E., Larson, J.D., Wadman, S.A., Norseng, E., Clark, K.J., He, L., Karlsson-Lindahl, L., Häger, A.K., Weber, H., Augustin, H., Samuelsson, T., Kemmet, C.K., Utesch, C.M., Essner, J.J., Hackett, P.B., and Hellström, M. (2009) Combination of reverse and chemical genetic screens reveals angiogenesis inhibitors and targets. Chemistry & Biology. 16(4):432-441

Kan, N.G., Junghans, D., and Izpisúa Belmonte, J.C. (2009) Compensatory growth mechanisms regulated by BMP and FGF signaling mediate liver regeneration in zebrafish after partial hepatectomy. FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 23(10):3516-3525

Kaslin, J., Ganz, J., Geffarth, M., Grandel, H., Hans, S., and Brand, M. (2009) Stem cells in the adult zebrafish cerebellum: initiation and maintenance of a novel stem cell niche. The Journal of neuroscience : the official journal of the Society for Neuroscience. 29(19):6142-6153

Kassen, S.C., Thummel, R., Campochiaro, L.A., Harding, M.J., Bennett, N.A., and Hyde, D.R. (2009) CNTF induces photoreceptor neuroprotection and Müller glial cell proliferation through two different signaling pathways in the adult zebrafish retina. Experimental Eye Research. 88(6):1051-1064

Kawahara, A., Nishi, T., Hisano, Y., Fukui, H., Yamaguchi, A., and Mochizuki, N. (2009) The Sphingolipid Transporter Spns2 Functions in Migration of Zebrafish Myocardial Precursors. Science (New York, N.Y.). 323(5913):524-527

Kim, H.R., and Ingham, P.W. (2009) The extracellular matrix protein TGFBI promotes myofibril bundling and muscle fibre growth in the zebrafish embryo. Developmental Dynamics : an official publication of the American Association of Anatomists. 238(1):56-65

Kim, J.D., Chun, H.S., Kim, S.H., Kim, H.S., Kim, Y.S., Kim, M.J., Shin, J., Rhee, M., Yeo, S.Y., and Huh, T.L. (2009) Normal forebrain development may require continual Wnt antagonism until mid-somitogenesis in zebrafish. Biochemical and Biophysical Research Communications. 381(4):717-721

Kinkel, M.D., Sefton, E.M., Kikuchi, Y., Mizoguchi, T., Ward, A.B., and Prince, V.E. (2009) Cyp26 enzymes function in endoderm to regulate pancreatic field size. Proceedings of the National Academy of Sciences of the United States of America. 106(19):7864-7869

Kitaguchi, T., Kawakami, K., and Kawahara, A. (2009) Transcriptional regulation of a myeloid-lineage specific gene lysozyme C during zebrafish myelopoiesis. Mechanisms of Development. 126(5-6):314-323

Kitambi, S.S., McCulloch, K.J., Peterson, R.T., and Malicki, J.J. (2009) Small molecule screen for compounds that affect vascular development in the zebrafish retina. Mechanisms of Development. 126(5-6):464-477

Kleaveland, B., Zheng, X., Liu, J.J., Blum, Y., Tung, J.J., Zou, Z., Chen, M., Guo, L., Lu, M.M., Zhou, D., Kitajewski, J., Affolter, M., Ginsberg, M.H., and Kahn, M.L. (2009) Regulation of cardiovascular development and integrity by the heart of glass-cerebral cavernous malformation protein pathway. Nature medicine. 15(2):169-176

Ko, S.K., Jin, H.J., Jung, D.W., Tian, X., and Shin, I. (2009) Cardiosulfa, a Small Molecule that Induces Abnormal Heart Development in Zebrafish, and Its Biological Implications. Angewandte Chemie (International ed. in English). 48(42):7809-7812

Koide, T., Miyasaka, N., Morimoto, K., Asakawa, K., Urasaki, A., Kawakami, K., and Yoshihara, Y. (2009) Olfactory neural circuitry for attraction to amino acids revealed by transposon-mediated gene trap approach in zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 106(24):9884-9889

Kucenas, S., Cox, J.A., Soto, F., Lamora, A., and Voigt, M.M. (2009) Ectodermal P2X receptor function plays a pivotal role in craniofacial development of the zebrafish. Purinergic signalling. 5(3):395-407

Kucenas, S., Wang, W.D., Knapik, E.W., and Appel, B. (2009) A selective glial barrier at motor axon exit points prevents oligodendrocyte migration from the spinal cord. The Journal of neuroscience : the official journal of the Society for Neuroscience. 29(48):15187-15194

Laguerre, L., Ghysen, A., and Dambly-Chaudière, C. (2009) Mitotic patterns in the migrating lateral line cells of zebrafish embryos. Developmental Dynamics : an official publication of the American Association of Anatomists. 238(5):1042-1051

Lam, E.Y., Chau, J.Y., Kalev-Zylinska, M.L., Fountaine, T.M., Mead, R.S., Hall, C.J., Crosier, P.S., Crosier, K.E., and Flores, M.V. (2009) Zebrafish runx1 promoter-EGFP transgenics mark discrete sites of definitive blood progenitors. Blood. 113(6):1241-1249

Lamont, R.E., Lamont, E.J., and Childs, S.J. (2009) Antagonistic interactions among Plexins regulate the timing of intersegmental vessel formation. Developmental Biology. 331(2):199-209

Lamora, A., and Voigt, M.M. (2009) Cranial sensory ganglia neurons require intrinsic N-cadherin function for guidance of afferent fibers to their final targets. Neuroscience. 159(3):1175-1184

Lee, C.Y., Hu, S.Y., Gong, H.Y., Chen, M.H., Lu, J.K., and Wu, J.L. (2009) Suppression of myostatin with vector-based RNA interference causes a double-muscle effect in transgenic zebrafish. Biochemical and Biophysical Research Communications. 387(4):766-771

Lee, C.Y., Vogeli, K.M., Kim, S.H., Chong, S.W., Jiang, Y.J., Stainier, D.Y., and Jin, S.W. (2009) Notch Signaling Functions as a Cell-Fate Switch between the Endothelial and Hematopoietic Lineages. Current biology : CB. 19(19):1616-1622

Lee, H.C., Tseng, W.A., Lo, F.Y., Liu, T.M., and Tsai, H.J. (2009) FoxD5 mediates anterior-posterior polarity through upstream modulator Fgf signaling during zebrafish somitogenesis. Developmental Biology. 336(2):232-245

Lee, S.L., Rouhi, P., Jensen, L.D., Zhang, D., Ji, H., Hauptmann, G., Ingham, P., and Cao, Y. (2009) Hypoxia-induced pathological angiogenesis mediates tumor cell dissemination, invasion, and metastasis in a zebrafish tumor model. Proceedings of the National Academy of Sciences of the United States of America. 106(46):19485-19490

Lee, Y., Hami, D., De Val, S., Kagermeier-Schenk, B., Wills, A.A., Black, B.L., Weidinger, G., and Poss, K.D. (2009) Maintenance of blastemal proliferation by functionally diverse epidermis in regenerating zebrafish fins. Developmental Biology. 331(2):270-280

Li, Y.N., Matsui, J.I., and Dowling, J.E. (2009) Specificity of the horizontal cell-photoreceptor connections in the zebrafish (Danio rerio) retina. The Journal of comparative neurology. 516(5):442-453

Lillesaar, C., Stigloher, C., Tannhäuser, B., Wullimann, M.F., and Bally-Cuif, L. (2009) Axonal projections originating from raphe serotonergic neurons in the developing and adult zebrafish, Danio rerio, using transgenics to visualize raphe-specific pet1 expression. The Journal of comparative neurology. 512(2):158-182

Liongue, C., Hall, C.J., O'Connell, B.A., Crosier, P., and Ward, A.C. (2009) Zebrafish granulocyte colony-stimulating factor receptor signaling promotes myelopoiesis and myeloid cell migration. Blood. 113(11):2535-2546

Lyons, D.A., Naylor, S.G., Scholze, A., and Talbot, W.S. (2009) Kif1b is essential for mRNA localization in oligodendrocytes and development of myelinated axons. Nature Genetics. 41(7):854-858

Mariappan, D., Niemann, R., Gajewski, M., Winkler, J., Chen, S., Choorapoikayil, S., Bitzer, M., Schulz, H., Hescheler, J., and Sachinidis, A. (2009) Somitovasculin, a Novel Endothelial-Specific Transcript Involved in the Vasculature Development. Arterioscler. Thromb. Vasc. Biol.. 29(11):1823-1829

Marques, I.J., Weiss, F.U., Vlecken, D.H., Nitsche, C., Bakkers, J., Lagendijk, A., Partecke, L.I., Heidecke, C.D., Lerch, M.M., and Bagowski, C.P. (2009) Metastatic behaviour of primary human tumours in a zebrafish xenotransplantation model. BMC cancer. 9:128

Marques, S.R., and Yelon, D. (2009) Differential requirement for BMP signaling in atrial and ventricular lineages establishes cardiac chamber proportionality. Developmental Biology. 328(2):472-482

Martin, E.D., Moriarty, M.A., Byrnes, L., and Grealy, M. (2009) Plakoglobin has both structural and signalling roles in zebrafish development. Developmental Biology. 327(1):83-96

Martin, R.T., and Bartman, T. (2009) Analysis of heart valve development in larval zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 238(7):1796-1802

Mathew, L.K., Sengupta, S., Franzosa, J., Perry, J., La Du, J., Andreasen, E.A., and Tanguay, R.L. (2009) Comparative expression profiling reveals an essential role for Raldh2 in epimorphic regeneration. The Journal of biological chemistry. 284(48):33642-33653

McLean, D.L., and Fetcho, J.R. (2009) Spinal interneurons differentiate sequentially from those driving the fastest swimming movements in larval zebrafish to those driving the slowest ones. The Journal of neuroscience : the official journal of the Society for Neuroscience. 29(43):13566-13577

McMahon, C., Gestri, G., Wilson, S.W., and Link, B.A. (2009) Lmx1b is essential for survival of periocular mesenchymal cells and influences Fgf-mediated retinal patterning in zebrafish. Developmental Biology. 332(2):287-298

Mich, J.K., Blaser, H., Thomas, N.A., Firestone, A.J., Yelon, D., Raz, E., and Chen, J.K. (2009) Germ cell migration in zebrafish is cyclopamine-sensitive but Smoothened-independent. Developmental Biology. 328(2):342-354

Miyasaka, N., Morimoto, K., Tsubokawa, T., Higashijima, S., Okamoto, H., and Yoshihara, Y. (2009) From the olfactory bulb to higher brain centers: genetic visualization of secondary olfactory pathways in zebrafish. The Journal of neuroscience : the official journal of the Society for Neuroscience. 29(15):4756-4767

Montero-Balaguer, M., Swirsding, K., Orsenigo, F., Cotelli, F., Mione, M., and Dejana, E. (2009) Stable vascular connections and remodeling require full expression of VE-cadherin in zebrafish embryos. PLoS One. 4(6):e5772

Moss, J.B., Koustubhan, P., Greenman, M., Parsons, M.J., Walter, I., and Moss, L.G. (2009) Regeneration of the Pancreas in Adult Zebrafish. Diabetes. 58(8):1844-1851

Nagy, N., Mwizerwa, O., Yaniv, K., Carmel, L., Pieretti-Vanmarcke, R., Weinstein, B.M., and Goldstein, A.M. (2009) Endothelial cells promote migration and proliferation of enteric neural crest cells via beta1 integrin signaling. Developmental Biology. 330(2):263-272

Navratilova, P., Fredman, D., Hawkins, T.A., Turner, K., Lenhard, B., and Becker, T.S. (2009) Systematic human/zebrafish comparative identification of cis-regulatory activity around vertebrate developmental transcription factor genes. Developmental Biology. 327(2):526-540

Neugebauer, J.M., Amack, J.D., Peterson, A.G., Bisgrove, B.W., and Yost, H.J. (2009) FGF signalling during embryo development regulates cilia length in diverse epithelia. Nature. 458(7238):651-654

Nicoli, S., De Sena, G., and Presta, M. (2009) Fibroblast Growth Factor 2-induced angiogenesis in zebrafish: the zebrafish yolk membrane (ZFYM) angiogenesis assay. Journal of Cellular and Molecular Medicine. 13(8b):2061-2068

North, T.E., Goessling, W., Peeters, M., Li, P., Ceol, C., Lord, A.M., Weber, G.J., Harris, J., Cutting, C.C., Huang, P., Dzierzak, E., and Zon, L.I. (2009) Hematopoietic stem cell development is dependent on blood flow. Cell. 137(4):736-748

Nuñez, V.A., Sarrazin, A.F., Cubedo, N., Allende, M.L., Dambly-Chaudière, C., and Ghysen, A. (2009) Postembryonic development of the posterior lateral line in the zebrafish. Evolution & development. 11(4):391-404

Nyholm, M.K., Abdelilah-Seyfried, S., and Grinblat, Y. (2009) A novel genetic mechanism regulates dorsolateral hinge-point formation during zebrafish cranial neurulation. Journal of Cell Science. 122(Pt 12):2137-2148

O'Brien, G.S., Martin, S.M., Söllner, C., Wright, G.J., Becker, C.G., Portera-Cailliau, C., and Sagasti, A. (2009) Developmentally Regulated Impediments to Skin Reinnervation by Injured Peripheral Sensory Axon Terminals. Current biology : CB. 19(24):2086-2090

O'Connor, M.N., Salles, I.I., Cvejic, A., Watkins, N.A., Walker, A., Garner, S.F., Jones, C.I., Macaulay, I.C., Steward, M., Zwaginga, J.J., Bray, S.L., Dudbridge, F., de Bono, B., Goodall, A.H., Deckmyn, H., Stemple, D.L., and Ouwehand, W.H. (2009) Functional genomics in zebrafish permits rapid characterization of novel platelet membrane proteins. Blood. 113(19):4754-4762

Ochocinska, M.J., and Hitchcock, P.F. (2009) NeuroD regulates proliferation of photoreceptor progenitors in the retina of the zebrafish. Mechanisms of Development. 126(3-4):128-141

Ohn, J., Tsai, H.J., and Liebling, M. (2009) Joint dynamic imaging of morphogenesis and function in the developing heart. Organogenesis. 5(4):166-173

Olesnicky Killian, E.C., Birkholz, D.A., and Artinger, K.B. (2009) A role for chemokine signaling in neural crest cell migration and craniofacial development. Developmental Biology. 333(1):161-172

Packham, I.M., Gray, C., Heath, P.R., Hellewell, P.G., Ingham, P.W., Crossman, D.C., Milo, M., and Chico, T.J. (2009) Microarray profiling reveals CXCR4a is downregulated by blood flow in vivo and mediates collateral formation in zebrafish embryos. Physiological Genomics. 38(3):319-327

Padmanabhan, A., Lee, J.S., Ismat, F.A., Lu, M.M., Lawson, N.D., Kanki, J.P., Look, A.T., and Epstein, J.A. (2009) Cardiac and vascular functions of the zebrafish orthologues of the type I neurofibromatosis gene NFI. Proceedings of the National Academy of Sciences of the United States of America. 106(52):22305-22310

Palevitch, O., Abraham, E., Borodovsky, N., Levkowitz, G., Zohar, Y., and Gothilf, Y. (2009) Nasal embryonic LHRH factor plays a role in the developmental migration and projection of gonadotropin-releasing hormone 3 neurons in zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 238(1):66-75

Park, J.S., Kim, H.S., Kim, J.D., Seo, J., Chung, K.S., Lee, H.S., Huh, T.L., Jo, I., and Kim, Y.O. (2009) Isolation of a ventricle-specific promoter for the zebrafish ventricular myosin heavy chain (vmhc) gene and its regulation by GATA factors during embryonic heart development. Developmental Dynamics : an official publication of the American Association of Anatomists. 238(6):1574-1581

Parsons, M.J., Pisharath, H., Yusuff, S., Moore, J.C., Siekmann, A.F., Lawson, N., and Leach, S.D. (2009) Notch-responsive cells initiate the secondary transition in larval zebrafish pancreas. Mechanisms of Development. 126(10):898-912

Pase, L., Layton, J.E., Kloosterman, W.P., Carradice, D., Waterhouse, P.M., and Lieschke, G.J. (2009) miR-451 regulates zebrafish erythroid maturation in vivo via its target gata2. Blood. 113(8):1794-1804

Peal, D.S., Burns, C.G., MacRae, C.A., and Milan, D. (2009) Chondroitin sulfate expression is required for cardiac atrioventricular canal formation. Developmental Dynamics : an official publication of the American Association of Anatomists. 238(12):3103-3110

Phng, L.K., Potente, M., Leslie, J.D., Babbage, J., Nyqvist, D., Lobov, I., Ondr, J.K., Rao, S., Lang, R.A., Thurston, G., and Gerhardt, H. (2009) Nrarp coordinates endothelial Notch and Wnt signaling to control vessel density in angiogenesis. Developmental Cell. 16(1):70-82

Picker, A., Cavodeassi, F., Machate, A., Bernauer, S., Hans, S., Abe, G., Kawakami, K., Wilson, S.W., and Brand, M. (2009) Dynamic coupling of pattern formation and morphogenesis in the developing vertebrate retina. PLoS Biology. 7(10):e1000214

Pistocchi, A., Feijoo, C.G., Cabrera, P., Villablanca, E.J., Allende, M.L., and Cotelli, F. (2009) The zebrafish prospero homolog prox1 is required for mechanosensory hair cell differentiation and functionality in the lateral line. BMC Developmental Biology. 9:58

Placinta, M., Shen, M.C., Achermann, M., and Karlstrom, R.O. (2009) A laser pointer driven microheater for precise local heating and conditional gene regulation in vivo. Microheater driven gene regulation in zebrafish. BMC Developmental Biology. 9:73

Raghunath, M., Wong, Y.S., Farooq, M., and Ge, R. (2009) Pharmacologically induced angiogenesis in transgenic zebrafish. Biochemical and Biophysical Research Communications. 378(4):766-771

Rampon, C., Bouzaffour, M., Ostuni, M.A., Dufourcq, P., Girard, C., Freyssinet, J.M., Lacapere, J.J., Schweizer-Groyer, G., and Vriz, S. (2009) Translocator protein (18 kDa) is involved in primitive erythropoiesis in zebrafish. FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 23(12):4181-4192

Regan, J.C., Concha, M.L., Roussigne, M., Russell, C., and Wilson, S.W. (2009) An Fgf8-dependent bistable cell migratory event establishes CNS asymmetry. Neuron. 61(1):27-34

Reimer, M.M., Kuscha, V., Wyatt, C., Sörensen, I., Frank, R.E., Knüwer, M., Becker, T., and Becker, C.G. (2009) Sonic hedgehog is a polarized signal for motor neuron regeneration in adult zebrafish. The Journal of neuroscience : the official journal of the Society for Neuroscience. 29(48):15073-15082

Rhodes, J., Amsterdam, A., Sanda, T., Moreau, L.A., McKenna, K., Heinrichs, S., Ganem, N.J., Ho, K.W., Neuberg, D.S., Johnston, A., Ahn, Y., Kutok, J.L., Hromas, R., Wray, J., Lee, C., Murphy, C., Radke, I., Downing, J.R., Fleming, M.D., Macconaill, L.E., Amatruda, J.F., Gutierrez, A., Galinsky, I., Stone, R.M., Ross, E.A., Pellman, D.S., Kanki, J.P., and Look, A.T. (2009) Emi1 Maintains Genomic Integrity during Zebrafish Embryogenesis and Cooperates with p53 in Tumor Suppression. Molecular and cellular biology. 29(21):5911-5922

Roberts, R.K., and Appel, B. (2009) Apical polarity protein PrkCi is necessary for maintenance of spinal cord precursors in zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 238(7):1638-1648

Roussigné, M., Bianco, I.H., Wilson, S.W., and Blader, P. (2009) Nodal signalling imposes left-right asymmetry upon neurogenesis in the habenular nuclei. Development (Cambridge, England). 136(9):1549-1557

Row, R., and Kimelman, D. (2009) Bmp inhibition is necessary for post-gastrulation patterning and morphogenesis of the zebrafish tailbud. Developmental Biology. 329(1):55-63

San Antonio, J.D., Zoeller, J.J., Habursky, K., Turner, K., Pimtong, W., Burrows, M., Choi, S., Basra, S., Bennett, J.S., Degrado, W.F., and Iozzo, R.V. (2009) A Key Role for the Integrin {alpha}2{beta}1 in Experimental and Developmental Angiogenesis. The American journal of pathology. 175(3):1338-1347

Sanek, N.A., Taylor, A.A., Nyholm, M.K., and Grinblat, Y. (2009) Zebrafish zic2a patterns the forebrain through modulation of Hedgehog-activated gene expression. Development (Cambridge, England). 136(22):3791-3800

Santoriello, C., Deflorian, G., Pezzimenti, F., Kawakami, K., Lanfrancone, L., d'Adda di Fagagna, F., and Mione, M. (2009) Expression of H-RASV12 in a zebrafish model of Costello syndrome causes cellular senescence in adult proliferating cells. Disease models & mechanisms. 2(1-2):56-67

Santoro, M.M., Pesce, G., and Stainier, D.Y. (2009) Characterization of vascular mural cells during zebrafish development. Mechanisms of Development. 126(8-9):638-649

Schebesta, M., and Serluca, F.C. (2009) olig1 expression identifies developing oligodendrocytes in zebrafish and requires hedgehog and notch signaling. Developmental Dynamics : an official publication of the American Association of Anatomists. 238(4):887-898

Schwend, T., and Ahlgren, S.C. (2009) Zebrafish con/disp1 reveals multiple spatiotemporal requirements for Hedgehog-signaling in craniofacial development. BMC Developmental Biology. 9:59

Shima, T., Znosko, W., and Tsang, M. (2009) The characterization of a zebrafish mid-hindbrain mutant, mid-hindbrain gone (mgo). Developmental Dynamics : an official publication of the American Association of Anatomists. 238(4):899-907

Sisson, B.E., and Topczewski, J. (2009) Expression of five frizzleds during zebrafish craniofacial development. Gene expression patterns : GEP. 9(7):520-527

Skarie, J.M., and Link, B.A. (2009) FoxC1 is essential for vascular basement membrane integrity and hyaloid vessel morphogenesis. Investigative ophthalmology & visual science. 50(11):5026-5034

Skouloudaki, K., Puetz, M., Simons, M., Courbard, J.R., Boehlke, C., Hartleben, B., Engel, C., Moeller, M.J., Englert, C., Bollig, F., Schäfer, T., Ramachandran, H., Mlodzik, M., Huber, T.B., Kuehn, E.W., Kim, E., Kramer-Zucker, A., and Walz, G. (2009) Scribble participates in Hippo signaling and is required for normal zebrafish pronephros development. Proceedings of the National Academy of Sciences of the United States of America. 106(21):8579-8584

Slanchev, K., Carney, T.J., Stemmler, M.P., Koschorz, B., Amsterdam, A., Schwarz, H., and Hammerschmidt, M. (2009) The epithelial cell adhesion molecule EpCAM is required for epithelial morphogenesis and integrity during zebrafish epiboly and skin development. PLoS Genetics. 5(7):e1000563

Smith, K.A., Joziasse, I.C., Chocron, S., van Dinther, M., Guryev, V., Verhoeven, M.C., Rehmann, H., van der Smagt, J.J., Doevendans, P.A., Cuppen, E., Mulder, B.J., Ten Dijke, P., and Bakkers, J. (2009) Dominant-Negative ALK2 Allele Associates With Congenital Heart Defects. Circulation. 119(24):3062-3069

So, J.H., Chun, H.S., Bae, Y.K., Kim, H.S., Park, Y.M., Huh, T.L., Chitnis, A.B., Kim, C.H., and Yeo, S.Y. (2009) Her4 is necessary for establishing peripheral projections of the trigeminal ganglia in zebrafish. Biochemical and Biophysical Research Communications. 379(1):22-26

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Emelyanov, A., and Parinov, S. (2008) Mifepristone-inducible LexPR system to drive and control gene expression in transgenic zebrafish. Developmental Biology. 320(1):113-121

Eyries, M., Siegfried, G., Ciumas, M., Montagne, K., Agrapart, M., Lebrin, F., and Soubrier, F. (2008) Hypoxia-Induced Apelin Expression Regulates Endothelial Cell Proliferation and Regenerative Angiogenesis. Circulation research. 103(4):432-440

Farooq, M., Sulochana, K.N., Pan, X., To, J., Sheng, D., Gong, Z., and Ge, R. (2008) Histone deacetylase 3 (hdac3) is specifically required for liver development in zebrafish. Developmental Biology. 317(1):336-353

Fausett, B.V., Gumerson, J.D., and Goldman, D. (2008) The proneural basic helix-loop-helix gene ascl1a is required for retina regeneration. The Journal of neuroscience : the official journal of the Society for Neuroscience. 28(5):1109-1117

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Gansner, J.M., Madsen, E.C., Mecham, R.P., and Gitlin, J.D. (2008) Essential role for fibrillin-2 in zebrafish notochord and vascular morphogenesis. Developmental Dynamics : an official publication of the American Association of Anatomists. 237(10):2844-2861

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Garnaas, M.K., Moodie, K.L., Liu, M.L., Samant, G.V., Li, K., Marx, R., Baraban, J.M., Horowitz, A., and Ramchandran, R. (2008) Syx, a RhoA Guanine Exchange Factor, Is Essential for Angiogenesis In Vivo. Circulation research. 103(7):710-716

Goessling, W., North, T.E., Lord, A.M., Ceol, C., Lee, S., Weidinger, G., Bourque, C., Strijbosch, R., Haramis, A.P., Puder, M., Clevers, H., Moon, R.T., and Zon, L.I. (2008) APC mutant zebrafish uncover a changing temporal requirement for wnt signaling in liver development. Developmental Biology. 320(1):161-174

Gore, A.V., Lampugnani, M.G., Dye, L., Dejana, E., and Weinstein, B.M. (2008) Combinatorial interaction between CCM pathway genes precipitates hemorrhagic stroke. Disease models & mechanisms. 1(4-5):275-281

Grimes, A.C., Erwin, K.N., Stadt, H.A., Hunter, G.L., Gefroh, H.A., Tsai, H.J., and Kirby, M.L. (2008) PCB126 Exposure Disrupts Zebrafish Ventricular and Branchial but Not Early Neural Crest Development. Toxicological sciences : an official journal of the Society of Toxicology. 106(1):193-205

Harding, R.L., Howley, S., Baker, L.J., Murphy, T.R., Archer, W.E., Wistow, G., Hyde, D.R., and Vihtelic, T.S. (2008) Lengsin expression and function during zebrafish lens formation. Experimental Eye Research. 86(5):807-818

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Hong, S.K., Tsang, M., and Dawid, I.B. (2008) The Mych Gene Is Required for Neural Crest Survival during Zebrafish Development. PLoS One. 3(4):e2029

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Imamura, S., Uchiyama, J., Koshimizu, E., Hanai, J., Raftopoulou, C., Murphey, R.D., Bayliss, P.E., Imai, Y., Burns, C.E., Masutomi, K., Gagos, S., Zon, L.I., Roberts, T.M., and Kishi, S. (2008) A non-canonical function of zebrafish telomerase reverse transcriptase is required for developmental hematopoiesis. PLoS One. 3(10):e3364

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Isken, A., Golczak, M., Oberhauser, V., Hunzelmann, S., Driever, W., Imanishi, Y., Palczewski, K., and von Lintig, J. (2008) RBP4 Disrupts Vitamin A Uptake Homeostasis in a STRA6-Deficient Animal Model for Matthew-Wood Syndrome. Cell Metabolism. 7(3):258-268

Jeong, J.Y., Kwon, H.B., Ahn, J.C., Kang, D., Kwon, S.H., Park, J.A., and Kim, K.W. (2008) Functional and developmental analysis of the blood-brain barrier in zebrafish. Brain research bulletin. 75(5):619-628

Jiang, Z., Song, J., Qi, F., Xiao, A., An, X., Liu, N.A., Zhu, Z., Zhang, B., and Lin, S. (2008) Exdpf is a key regulator of exocrine pancreas development controlled by retinoic acid and ptf1a in zebrafish. PLoS Biology. 6(11):e293

Jung Kim, M., Ho Kang, K., Kim, C.H., and Choi, S.Y. (2008) Real-time imaging of mitochondria in transgenic zebrafish expressing mitochondrially targeted GFP. Biotechniques. 45(3):331-334

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Zebrafish Nomenclature Committee (2023) Nomenclature Data Curation (2023). Nomenclature Committee Submission.

Zebrafish Nomenclature Committee (2022) Nomenclature Data Curation (2022). Nomenclature Committee Submission.

Zebrafish Nomenclature Committee (2021) Nomenclature Data Curation (2021). Nomenclature Committee Submission.

Zebrafish Nomenclature Committee (2020) Nomenclature Data Curation (2020). Nomenclature Committee Submission.

Zebrafish Nomenclature Committee (2019) Nomenclature Data Curation (2019). Nomenclature Committee Submission.

Zebrafish Nomenclature Committee (2018) Nomenclature Data Curation (2018). Nomenclature Committee Submission.

Quach, H.N., Tao, S., Vrljicak, P., Joshi, A., Ruan, H., Sukumaran, R., Varshney, G.K., LaFave, M.C., Screen Team, T.D., Burgess, S.M., Winkler, C., Emelyanov, A., Parinov, S., Sampath, K. (2017) Expression Data for a Multifunctional Mutagenesis System for Analysis of Gene Function in Zebrafish. ZFIN Direct Data Submission.

Zebrafish Nomenclature Committee (2017) Nomenclature Data Curation (2017). Nomenclature Committee Submission.

Zebrafish Nomenclature Committee (2016) Nomenclature Data Curation (2016). Nomenclature Committee Submission.

Zebrafish Nomenclature Committee (2015) Nomenclature Data Curation (2015). Nomenclature Committee Submission.

Zebrafish Nomenclature Committee (2014) Nomenclature Data Curation (2014). Nomenclature Committee Submission.

ZIRC and ZFIN staff (2014) Mutant and Transgenic Line Submissions 2014. ZFIN Direct Data Submission.

Balciuniene, J., and Balciunas, D. (2013) Expression Pattern from Gal4 gene trap screen. ZFIN Direct Data Submission.

Hutcheson, D., Otsuna, H., Chien, C.B., Dorsky, R. (2013) Enhancer Trap Mutants, Gal4 Project. ZFIN Direct Data Submission.

Zebrafish Nomenclature Committee (2013) Nomenclature Data Curation. Nomenclature Committee Submission.

Zebrafish Nomenclature Committee (2013) Nomenclature Requests: Mutant and Transgenic Name Reservations (2013). Nomenclature Committee Submission.

ZIRC and ZFIN staff (2013) Mutant and Transgenic Line Submissions 2013. ZFIN Direct Data Submission.

Zebrafish Nomenclature Committee (2012) Nomenclature Requests: Mutant and Transgenic Name Reservations (2012). Nomenclature Committee Submission.

ZIRC and ZFIN staff (2012) Mutant and Transgenic Line Submissions 2012. ZFIN Direct Data Submission.

Zebrafish Nomenclature Committee (2011) Nomenclature Requests: Mutant and Transgenic Name Reservations (2011). Nomenclature Committee Submission.

Zebrafish Nomenclature Committee (2011) Nomenclature Data Curation (active). Nomenclature Committee Submission.

ZIRC and ZFIN staff (2011) Mutant and Transgenic Line Submissions 2011. ZFIN Direct Data Submission.

Johnson, S. (2010) Transgenic Line Submissions. ZFIN Direct Data Submission.

Zebrafish Nomenclature Committee (2010) Mutant and transgenic name reservations. Nomenclature Committee Submission.

ZIRC and ZFIN staff (2010) Mutant and Transgenic Line Submissions 2010. ZFIN Direct Data Submission.

ZIRC and ZFIN staff (2009) Mutant and Transgenic Line Submissions 2009. ZFIN Direct Data Submission.

ZFIN Staff (2008) Antibody information from supplier. Manually curated data.

ZIRC and ZFIN Staff (2008) Mutant and Transgenic Line Submissions 2008. ZFIN Direct Data Submission.

RIKEN and ZFIN staff (2007) Mutant and Transgenic Line Submissions from NBRP. ZFIN Direct Data Submission.

ZIRC and ZFIN Staff (2007) Mutant and Transgenic Line Submissions. ZFIN Direct Data Submission.

ZIRC and ZFIN Staff (2007) Plasmid and Clone Submissions. ZFIN Direct Data Submission.

Phenotype Annotation (1994-2006) (2006) Mutant Data Curated from Older Literature. ZFIN Historical Data.

Zebrafish Nomenclature Committee (2006) Mutant / transgenic name reservations. Nomenclature Committee Submission.

ZFIN Staff (2003) Submission and Curation of Mutant and Transgenic Lines. ZFIN Direct Data Submission.

ZFIN Staff (2002) Scientific Curation. Manually curated data.