Publication	Data		Fish	Anatomy
Hodorovich et al., 2023	Fig. 1		chd7ncu101/+ (TL) ,   chd7ncu101/ncu101 (TL)	cranium morphology, abnormal embryonic cranial skeleton morphogenesis disrupted, abnormal lapillus decreased amount, abnormal lapillus decreased size, abnormal otolith morphology, abnormal pericardium increased size, abnormal sagitta decreased amount, abnormal swim bladder uninflated, abnormal whole organism decreased life span, abnormal
	Fig. Table 1		chd7rdu1002/rdu1002 (AB) ,   chd7rdu1002/+ (AB)	cranium morphology, abnormal embryonic cranial skeleton morphogenesis disrupted, abnormal pericardium increased size, abnormal swim bladder uninflated, abnormal
	Fig. Table 2		TL + CRISPR14-chd7	cranium morphology, abnormal otolith morphology, abnormal pericardium increased size, abnormal swim bladder uninflated, abnormal
Shi et al., 2023	Figure 3		chd7ah517/ah517 (AB)	eye morphology, abnormal head decreased size, abnormal pericardium edematous, abnormal post-vent region curved, abnormal swimming behavior increased process quality, abnormal whole organism isl1a expression increased amount, abnormal whole organism isl2a expression increased amount, abnormal
	Figure 4		chd7ah517/ah517; vu12Tg (AB)	spinal cord oligodendrocyte decreased amount, abnormal
	Figure 5		chd7ah517/ah517; ue2Tg (AB) ,   chd7ah517/ah517 (AB)	Mauthner neuron myelin sheath decreased distribution, abnormal Mauthner neuron myelination decreased process quality, abnormal somitogenesis delayed, abnormal whole organism mbpa expression decreased amount, abnormal whole organism olig2 expression decreased amount, abnormal
	Figure 6		chd7ah517/ah517 (AB)	Mauthner neuron myelin sheath decreased thickness, abnormal neuron myelin sheath decreased thickness, abnormal
	Figure 7		chd7ah517/ah517 (AB)	whole organism flnb expression decreased amount, abnormal whole organism nr4a1 expression decreased amount, abnormal whole organism tnfrsf1a expression increased amount, abnormal
Krueger et al., 2022	Fig. 1		chd7sa19732/sa19732	retina chd7 expression absent, abnormal
	Fig. 3		chd7sa19732/+ ,   chd7sa19732/sa19732 ,   chd7sa19732/sa19732 ,   chd7sa19732/sa19732 ,   chd7hsi3/hsi3	eye decreased size, abnormal heart edematous, abnormal swim bladder malformed, abnormal swim bladder uninflated, abnormal whole organism decreased life span, abnormal
	Fig. 4		chd7sa19732/+ ,   chd7hsi3/+ ,   chd7sa19732/sa19732 ,   chd7hsi3/hsi3	ciliary marginal zone chd7 expression decreased amount, abnormal eye decreased size, abnormal retina chd7 expression absent, abnormal retinal ganglion cell layer chd7 expression decreased amount, abnormal retinal inner nuclear layer chd7 expression decreased amount, abnormal retinal outer nuclear layer chd7 expression decreased amount, abnormal
	Fig. 5		chd7hsi3/+ ,   chd7hsi3/hsi3	retinal cone cell development decreased process quality, abnormal retinal photoreceptor layer has fewer parts of type retinal cone cell, abnormal
	Fig. 6		chd7hsi3/+ ,   chd7hsi3/hsi3	retinal cone cell cone photoreceptor outer segment decreased length, abnormal retinal cone cell photoreceptor cell outer segment organization decreased process quality, abnormal retinal rod cell photoreceptor cell outer segment organization decreased process quality, abnormal retinal rod cell rod photoreceptor outer segment decreased length, abnormal
Sun et al., 2022	FIGURE 2		chd7sr6/sr6 ,   chd7sr5/+ ,   chd7sr6/+ ,   chd7sr5/sr5 ,   chd7sr5/sr5	eye decreased diameter, abnormal pericardium edematous, abnormal swim bladder decreased size, abnormal whole organism chd7 expression decreased amount, abnormal
	FIGURE 3		chd7sr5/sr5 ,   chd7sr5/sr5	basihyal cartilage decreased width, abnormal basihyal cartilage morphology, abnormal ceratobranchial 1 cartilage decreased length, abnormal ceratobranchial 2 cartilage decreased length, abnormal ceratobranchial 3 cartilage decreased length, abnormal ceratobranchial 4 cartilage decreased length, abnormal ceratobranchial 4 cartilage shape, abnormal ceratobranchial 5 cartilage decreased length, abnormal ceratobranchial 5 tooth decreased amount, abnormal ceratobranchial cartilage chondrocyte disorganized, abnormal pharyngeal arch cartilage lacks parts or has fewer parts of type ceratobranchial 4 cartilage, abnormal
	FIGURE 4		chd7sr5/sr5; hu7185Tg ,   chd7sr5/sr5; hu7185Tg ,   chd7sr5/+; hu7185Tg	aortic arch 3 asymmetrical, abnormal aortic arch 3 branched, abnormal aortic arch 3 decreased diameter, abnormal aortic arch 3 displaced to opercular artery, abnormal aortic arch 3 morphology, abnormal opercular artery decreased diameter, abnormal opercular artery morphology, abnormal pharyngeal arch artery morphogenesis process quality, abnormal ventral aorta decreased length, abnormal
	FIGURE 5		chd7sr5/sr5; el818Tg; hu7185Tg; ncv22Tg; zf384Tg ,   chd7sr5/+; el818Tg; hu7185Tg; ncv22Tg; zf384Tg	bulbus arteriosus decreased width, abnormal bulbus arteriosus elongated, abnormal bulbus arteriosus shape, abnormal
Asad et al., 2019	Fig. 1		TU + MO3-chd7 + MO8-chd7 ,   zf148Tg + MO3-chd7 + MO8-chd7	cranium motor neuron isl2a expression spatial pattern, abnormal cranium sensory neuron isl2a expression spatial pattern, abnormal enteric neuron decreased amount, abnormal eye decreased size, abnormal glial cell mbpa expression decreased amount, abnormal mandibular arch skeleton decreased size, abnormal pericardium edematous, abnormal perichondrium sox9b expression decreased amount, abnormal pharyngeal arch cartilage sox9a expression decreased amount, abnormal
	Fig. 5		TU + MO3-chd7 + MO8-chd7	lateral line glial cell mbpa expression decreased amount, abnormal trunk foxd3 expression increased amount, abnormal
Liu et al., 2019	Fig. 1		chd7ck004a/+	aggressive behavior increased occurrence, abnormal behavior occurrence, abnormal
	Fig. 2		chd7ck004a/+	aggressive behavior increased occurrence, abnormal
	Fig. 3		chd7ck004a/+	aggressive behavior increased occurrence, abnormal brain gad1b expression increased amount, abnormal brain glra2 expression increased amount, abnormal brain glra4b expression increased amount, abnormal brain glrba expression increased amount, abnormal brain slc17a6a expression decreased amount, abnormal brain slc17a7a expression increased amount, abnormal brain slc6a5 expression increased amount, abnormal brain slc6a9 expression increased amount, abnormal
Liu et al., 2019	Fig. 5		chd7ck004a/ck004a	cranial neural crest cell hand2 expression decreased amount, abnormal hindbrain cranial neural crest cell distributed, abnormal hindbrain cranial neural crest cell mislocalised, abnormal hindbrain migratory neural crest cell sox10 expression mislocalised, abnormal
Cloney et al., 2018	Fig. 1		chd7hsi3/hsi3 ,   chd7hsi3/+	heart increased size, abnormal melanocyte spatial pattern, abnormal swim bladder uninflated, abnormal
	Fig. 2		TU + MO5-chd7	intestine decreased length, abnormal
	Fig. 4		chd7hsi3/hsi3 ,   chd7hsi3/+ ,   TU + MO5-chd7	cranial nerve X neuron projection decreased amount, abnormal enteric neuron neuron projection decreased amount, abnormal
	Fig. 5		TU + MO5-chd7	intestinal motility disrupted, abnormal
	Fig. 6		TU + MO5-chd7	intestinal motility disrupted, abnormal
	Fig. 7		chd7hsi3/hsi3 ,   chd7hsi3/+	intestinal motility disrupted, abnormal
Liu et al., 2018	Fig. 1		zdf8Tg + MO2-chd7 ,   AB + MO2-chd7	thymus GFP expression decreased amount, abnormal thymus T cell ikzf1 expression decreased amount, abnormal thymus T cell il7r expression decreased amount, abnormal thymus T cell rag1 expression decreased amount, abnormal thymus T cell decreased amount, abnormal whole organism ikzf1 expression decreased amount, abnormal whole organism il7r expression decreased amount, abnormal whole organism rag1 expression decreased amount, abnormal
	Fig. 2		AB + MO2-chd7 ,   hkz04tTg; nz50Tg + MO2-chd7 ,   nz50Tg + MO2-chd7	caudal hematopoietic tissue myb expression increased amount, abnormal caudal hematopoietic tissue hematopoietic stem cell ikzf1 expression increased amount, abnormal caudal hematopoietic tissue hematopoietic stem cell myb expression increased amount, abnormal caudal hematopoietic tissue hematopoietic stem cell increased amount, abnormal caudal hematopoietic tissue lymphoid progenitor cell EGFP expression increased amount, abnormal caudal hematopoietic tissue lymphoid progenitor cell increased amount, abnormal caudal hematopoietic tissue macrophage mfap4.1 expression increased amount, abnormal caudal hematopoietic tissue macrophage EGFP expression increased amount, abnormal caudal hematopoietic tissue macrophage increased amount, abnormal caudal hematopoietic tissue myeloid lineage restricted progenitor cell increased amount, abnormal caudal hematopoietic tissue neutrophil mpx expression increased amount, abnormal caudal hematopoietic tissue neutrophil DsRed2 expression increased amount, abnormal caudal hematopoietic tissue neutrophil increased amount, abnormal caudal hematopoietic tissue pro-T cell irf4a expression increased amount, abnormal caudal hematopoietic tissue pro-T cell increased amount, abnormal thymus myb expression decreased amount, abnormal thymus primordium lymphoid progenitor cell decreased amount, abnormal thymus T cell decreased amount, abnormal ventral wall of dorsal aorta hematopoietic stem cell ikzf1 expression increased amount, abnormal ventral wall of dorsal aorta hematopoietic stem cell myb expression increased amount, abnormal whole organism ikzf1 expression increased amount, abnormal whole organism mfap4.1 expression increased amount, abnormal whole organism mpx expression increased amount, abnormal whole organism myb expression increased amount, abnormal
	Fig. 3		AB + MO2-chd7	pharyngeal pouch 2 nkx2.3 expression decreased amount, abnormal pharyngeal pouch 3 nkx2.3 expression decreased amount, abnormal pharyngeal pouch 4 nkx2.3 expression decreased amount, abnormal pharyngeal pouch 5 nkx2.3 expression decreased amount, abnormal pharyngeal pouch zn-5 labeling decreased amount, abnormal pharynx hypotrophic, abnormal thymus foxn1 expression decreased amount, abnormal thymus epithelium morphogenesis disrupted, abnormal whole organism foxn1 expression decreased amount, abnormal
	Fig. 4		AB + MO2-chd7	pharyngeal arch 4 dlx2a expression decreased amount, abnormal pharyngeal arch 4 hand2 expression decreased amount, abnormal pharyngeal arch 5 hand2 expression decreased amount, abnormal pharyngeal arch neural crest cell dlx2a expression decreased amount, abnormal pharyngeal arch neural crest cell hand2 expression decreased amount, abnormal
	Fig. 5		AB + MO2-chd7 ,   hkz04tTg; nz50Tg + MO2-chd7	T cell migration decreased process quality, abnormal thymus primordium ccl25a expression decreased amount, abnormal thymus primordium ccl25b expression decreased amount, abnormal thymus primordium lymphoid progenitor cell decreased amount, abnormal thymus primordium lymphoid progenitor cell EGFP expression decreased amount, abnormal whole organism ccl25a expression decreased amount, abnormal whole organism ccl25b expression decreased amount, abnormal
	Fig. 6		AB + MO2-chd7 ,   hkz04tTg + MO2-chd7	pharynx cell population proliferation decreased process quality, abnormal thymus apoptotic process increased process quality, abnormal thymus cell population proliferation decreased process quality, abnormal thymus EGFP expression decreased amount, abnormal
	Fig. 7		zdf8Tg + MO2-chd7 ,   AB + MO2-chd7	thymus rag1 expression decreased amount, abnormal thymus GFP expression decreased amount, abnormal whole organism rag1 expression decreased amount, abnormal whole organism rag2 expression decreased amount, abnormal
	Fig. 8		AB + MO2-chd7	pharynx bmp2b expression decreased amount, abnormal pharynx bmp4 expression decreased amount, abnormal
	Fig. 9		chd7ck004a/ck004a	pharyngeal arch 2 hand2 expression decreased amount, abnormal pharyngeal arch 3 hand2 expression decreased amount, abnormal pharyngeal arch 4 hand2 expression decreased amount, abnormal pharyngeal arch 5 hand2 expression decreased amount, abnormal pharyngeal pouch 1 nkx2.3 expression decreased amount, abnormal pharyngeal pouch 2 nkx2.3 expression decreased amount, abnormal pharyngeal pouch 3 nkx2.3 expression decreased amount, abnormal pharyngeal pouch 4 nkx2.3 expression decreased amount, abnormal pharyngeal pouch 5 nkx2.3 expression decreased amount, abnormal thymus foxn1 expression decreased amount, abnormal thymus ikzf1 expression decreased amount, abnormal thymus il7r expression decreased amount, abnormal thymus development disrupted, abnormal
	Fig. S10		chd7ck004a/ck004a	cranial cartilage malformed, abnormal pericardium edematous, abnormal swim bladder physical object quality, abnormal
	Fig. S2		AB + MO2-chd7	cranial cartilage malformed, abnormal eye morphology, abnormal heart looping disrupted, abnormal otolith amount, abnormal
	Fig. S3		hkz04tTg + MO2-chd7	caudal hematopoietic tissue EGFP expression increased amount, abnormal thymus EGFP expression decreased amount, abnormal
	Fig. S9		AB + MO1-chd7	thymus foxn1 expression decreased amount, abnormal thymus ikzf1 expression decreased amount, abnormal
Prykhozhij et al., 2017	Fig. 4		chd7hsi3/hsi3	eye decreased size, abnormal heart edematous, abnormal heart increased size, abnormal swim bladder uninflated, abnormal
Asad et al., 2016	Fig. 2		TU + MO8-chd7	neural crest foxd3 expression increased amount, abnormal neural crest cell snai2 expression decreased amount, abnormal neural crest cell sox9a expression decreased amount, abnormal neural crest cell migration disrupted, abnormal neural keel sox2 expression decreased amount, abnormal somite foxd3 expression increased amount, abnormal whole organism foxd3 expression increased amount, abnormal
	Fig. 3		ba2Tg + MO8-chd7 ,   TU + MO8-chd7	migratory neural crest mislocalised, abnormal neural crest sox10 expression spatial pattern, abnormal neural crest cell sox10 expression decreased amount, abnormal neural crest cell migration delayed, abnormal neural crest cell migration disrupted, abnormal neural plate border sox10 expression decreased amount, abnormal trunk sox10 expression spatial pattern, abnormal whole organism sox10 expression increased amount, abnormal
	Fig. 4		w47Tg + MO8-chd7 ,   TU + MO8-chd7	eye iridophore absent, abnormal head melanoblast GFP expression increased amount, abnormal melanocyte dct expression decreased amount, abnormal melanocyte tyr expression decreased amount, abnormal neural crest melanoblast mitfa expression increased amount, abnormal neural crest melanoblast GFP expression increased amount, abnormal trunk iridophore absent, abnormal whole organism decreased pigmentation, abnormal whole organism Melanin decreased amount, abnormal whole organism melanocyte shape, abnormal
	Fig. 5		zf148Tg + MO8-chd7 ,   TU + MO8-chd7	enteric neuron crestin expression decreased amount, abnormal epibranchial cartilage neuroblast neurod1 expression decreased amount, abnormal microvillous olfactory receptor neuron decreased amount, abnormal microvillous olfactory receptor neuron disorganized, abnormal motor neuron isl2a expression decreased amount, abnormal neuromast absent, abnormal neuromast decreased amount, abnormal sensory neuron isl2a expression decreased amount, abnormal
	Fig. 6		zf15Tg + MO8-chd7 ,   TU + MO8-chd7	cranium glial cell (sensu Vertebrata) absent, abnormal cranium glial cell foxd3 expression absent, abnormal lateral line glial cell (sensu Vertebrata) foxd3 expression increased amount, abnormal lateral line glial cell (sensu Vertebrata) GFP expression increased amount, abnormal lateral line glial cell (sensu Vertebrata) morphology, abnormal myelinating Schwann cell foxd3 expression increased amount, abnormal myelinating Schwann cell mbpa expression decreased amount, abnormal myelinating Schwann cell mbpa expression decreased distribution, abnormal myelinating Schwann cell myelination disrupted, abnormal
	Fig. 7		ba2Tg + MO8-chd7 ,   TU + MO8-chd7	ceratobranchial cartilage absent, abnormal ceratohyal cartilage absent, abnormal head decreased size, abnormal Meckel's cartilage absent, abnormal pericardium edematous, abnormal perichondrium sox9b expression decreased amount, abnormal perichondrium disorganized, abnormal pharyngeal arch chondrocyte sox9a expression absent, abnormal pharyngeal arch neural crest cell dlx2a expression decreased amount, abnormal ventral mandibular arch absent, abnormal
	Fig. S4		w47Tg + MO8-chd7	whole organism decreased pigmentation, abnormal
	Fig. S5		TU + MO3-chd7 ,   zf148Tg + MO8-chd7 ,   ba2Tg + MO8-chd7 ,   TU + MO8-chd7	cranial motor neuron isl2a expression decreased amount, abnormal enteric neuron decreased amount, abnormal head neuroblast neurod1 expression decreased amount, abnormal olfactory receptor cell decreased amount, abnormal vagal neural crest crestin expression decreased amount, abnormal
	Fig. S6		TU + MO3-chd7 ,   TU + MO8-chd7	brain glial cell (sensu Vertebrata) egr2b expression decreased amount, abnormal lateral line glial cell egr2b expression decreased amount, abnormal myelinating Schwann cell mbpa expression decreased amount, abnormal myelinating Schwann cell mbpa expression decreased distribution, abnormal
	Fig. S7		ba2Tg + MO3-chd7	pharyngeal arch cartilage morphology, abnormal
Balasubramanian et al., 2014	Fig. 2		WT + MO2-chd7	otic vesicle lacks parts or has fewer parts of type otolith, abnormal otolith decreased size, abnormal otolith development process quality, abnormal otolith fused with otolith, abnormal
Balow et al., 2013	Fig. 2		TU + MO3-chd7	blood circulation disrupted, abnormal eye morphology, abnormal heart contraction decreased process quality, abnormal otolith amount, abnormal otolith morphology, abnormal pectoral fin hypoplastic, abnormal pericardium edematous, abnormal
	Fig. 3		TU + MO3-chd7	ceratobranchial cartilage absent, abnormal ceratohyal cartilage malformed, abnormal cranial cartilage morphology, abnormal neurocranium decreased size, abnormal pharyngeal arch 3-7 absent, abnormal
	Fig. 4		TU + MO3-chd7	cell population proliferation decreased occurrence, abnormal
	Fig. S1		TU + MO3-chd7	ceratobranchial cartilage absent, abnormal cranial cartilage morphology, abnormal neurocranium decreased size, abnormal
Patten et al., 2012	Fig. 2		AB + MO1-chd7 ,   AB + MO2-chd7	caudal fin morphology, abnormal eye decreased size, abnormal head flattened, abnormal heart morphology, abnormal whole organism anterior-posterior axis curved, abnormal
	Fig. 3		AB + MO1-chd7	atrium orientation cardiac ventricle, abnormal eye decreased size, abnormal heart looping process quality, abnormal heart tubular, abnormal pericardium edematous, abnormal
	Fig. 4		AB + MO1-chd7	inner ear has fewer parts of type otolith, abnormal inner ear morphology, abnormal otolith increased size, abnormal otolith increased variability of size, abnormal otolith shape, abnormal semicircular canal malformed, abnormal
	Fig. 5		AB + MO1-chd7	bone mineralization process quality, abnormal hemal spine decreased size, abnormal neural spine decreased size, abnormal trunk anterior-posterior axis curved, abnormal vertebra decreased size, abnormal vertebra has fewer parts of type hemal spine, abnormal vertebra has fewer parts of type neural spine, abnormal vertebra increased distance vertebra, abnormal vertebra shape, abnormal
	Fig. 6		y1Tg + MO1-chd7 ,   AB + MO1-chd7	branching involved in blood vessel morphogenesis disrupted, abnormal intersegmental vessel irregular spatial pattern, abnormal somite border malformed, abnormal somitogenesis disrupted, abnormal somitogenesis process quality, abnormal
	Fig. 7		AB + MO1-chd7	retina layer formation disrupted, abnormal retina malformed, abnormal retinal ganglion cell decreased amount, abnormal retinal ganglion cell layer disorganized, abnormal retinal photoreceptor layer aplastic, abnormal
	Fig. 8		AB + MO1-chd7	axonogenesis disrupted, abnormal cranial nerve motor neuron disorganized, abnormal cranial nerve motor neuron position, abnormal facial ganglion axon decreased amount, abnormal facial ganglion axon decreased length, abnormal facial ganglion hypoplastic, abnormal facial nerve motor nucleus has fewer parts of type motor neuron, abnormal trigeminal ganglion axon decreased amount, abnormal trigeminal ganglion axon decreased length, abnormal
	Fig. 9		y1Tg + MO1-chd7	cranial neural crest disorganized, abnormal cranial neural crest has fewer parts of type cranial neural crest cell, abnormal neural crest cell migration disrupted, abnormal neural crest formation process quality, abnormal pharyngeal arch decreased amount, abnormal pharyngeal arch malformed, abnormal
	Fig. S2		AB + MO1-chd7	eye photoreceptor cell absent, abnormal retinal photoreceptor layer aplastic, abnormal
	text only		AB + MO1-chd7	whole organism anterior-posterior axis curved, abnormal whole organism balance, abnormal whole organism circling, abnormal
Jacobs-McDaniels et al., 2011	Fig. 3		AB + MO1-chd7 ,   AB + MO2-chd7	brain morphology, abnormal head flattened, abnormal pericardium edematous, abnormal post-vent region truncated, abnormal whole organism anterior-posterior axis curved, abnormal whole organism anterior-posterior axis kinked, abnormal
	Fig. 4		AB + MO1-chd7	determination of left/right symmetry disrupted, abnormal somitogenesis disrupted, abnormal
	Fig. S2		AB + MO1-chd7	determination of left/right symmetry disrupted, abnormal