Publication	Data		Fish	Anatomy
Schwarzer et al., 2017	Fig. 2		foxi1em1/em1	otic epithelium stm expression decreased distribution, abnormal otic vesicle morphology, abnormal
	Fig. 3		foxi1em1/em1	otic placode pax2a expression absent, abnormal otic placode pax2a expression decreased distribution, abnormal otic placode pax8 expression absent, abnormal otic placode sox9a expression decreased distribution, abnormal
Edlund et al., 2014	Fig. 9		AB + MO2-foxi1	pharyngeal endoderm apoptotic, abnormal
Swartz et al., 2014	Fig. 7		foxi1em1/em1	ceratobranchial cartilage decreased amount, abnormal ceratohyal cartilage displaced, abnormal hyosymplectic cartilage malformed, abnormal
Yao et al., 2014	Fig. 6		TU + MO2-foxi1	dorsolateral placode dlx3b expression decreased distribution, abnormal dorsolateral placode hmx3a expression decreased distribution, abnormal epibranchial field sox3 expression decreased distribution, abnormal neurogenic field posterior region six4b expression decreased amount, abnormal otic placode pax2a expression decreased distribution, abnormal otic vesicle hmx3a expression decreased distribution, abnormal
	Fig. 7		TU + MO2-foxi1	whole organism bmper expression decreased amount, abnormal whole organism dlx3b expression decreased amount, abnormal
Bhat et al., 2013	Fig. 4		x24Tg + MO2-foxi1 + MO2-gata3	adenohypophyseal placode increased size, abnormal olfactory pit increased size, abnormal otic vesicle hypoplastic, abnormal
Hans et al., 2013	Fig. 2		foxi1em1/em1	otic vesicle decreased size, abnormal otic vesicle has fewer parts of type immature macula, abnormal otic vesicle morphogenesis decreased process quality, abnormal otic vesicle neuroblast (sensu Vertebrata) poorly differentiated, abnormal otic vesicle neuron differentiation decreased process quality, abnormal
Barresi et al., 2010	Fig. 4		foxi1hi3747Tg/hi3747Tg (AB/TU)	radial glial cell cell projection disorganized, abnormal
Esaki et al., 2009	Fig. 1		foxi1m271/m271	inner ear malformed, abnormal integument physical object quality, abnormal mandibular arch skeleton malformed, abnormal
	Fig. 3		WT + MO3-foxi1	epithelial cell differentiation process quality, abnormal integument physical object quality, abnormal
Hans et al., 2007	Fig. 7		WT + MO2-foxi1	otic vesicle decreased size, abnormal
Sun et al., 2007	Fig. 7		WT + MO2-foxi1	epibranchial field pax2a expression absent, abnormal epibranchial field sox3 expression absent, abnormal
Phenotype Annotation (1994-2006)	Fig. for (em1)		foxi1em1/em1	inner ear quality, abnormal otolith quality, abnormal pharyngeal arch 3-7 skeleton quality, abnormal
	Fig. for (hi1321)		foxi1hi1321Tg	inner ear quality, abnormal pharyngeal arch 2 skeleton quality, abnormal pharyngeal arch 3-7 skeleton quality, abnormal ventral mandibular arch quality, abnormal
	Fig. for (hi1359a)		foxi1hi1359aTg	whole organism quality, abnormal
	Fig. for (hi3239)		foxi1hi3239Tg	pharyngeal arch 3-7 skeleton quality, abnormal
	Fig. for (hi3747)		foxi1hi3747Tg	pharyngeal arch 3-7 skeleton quality, abnormal
	Fig. for (m271)		foxi1m271 (AB)	inner ear quality, abnormal
	Fig. for (m809)		foxi1m809/m809	nervous system quality, abnormal
Mackereth et al., 2005	Fig. 8		WT + MO1-foxi1	otic vesicle decreased size, abnormal otic vesicle morphogenesis process quality, abnormal
Amsterdam et al., 2004	text only		foxi1hi1321Tg/hi1321Tg	inner ear has fewer parts of type otolith, abnormal otolith decreased size, abnormal pharyngeal arch 1 aplastic, abnormal trunk bent, abnormal trunk decreased thickness, abnormal
Lee et al., 2003	Fig. 1		foxi1m809/m809 ,   foxi1m809/m809; rw0Tg	facial ganglion absent, abnormal glossopharyngeal ganglion absent, abnormal middle lateral line ganglion absent, abnormal vagal ganglion decreased size, abnormal vagal ganglion lacks parts or has fewer parts of type vagal ganglion, abnormal ventral anterior lateral line ganglion absent, abnormal
	Fig. 2		rw0Tg + MO2-foxi1	facial ganglion absent, abnormal glossopharyngeal ganglion absent, abnormal vagal ganglion decreased size, abnormal vagal ganglion lacks parts or has fewer parts of type vagal ganglion, abnormal
	Fig. 4		foxi1m809/m809	facial ganglion absent, abnormal glossopharyngeal ganglion absent, abnormal vagal ganglion decreased size, abnormal vagal ganglion lacks parts or has fewer parts of type vagal ganglion, abnormal ventral anterior lateral line ganglion absent, abnormal
	Fig. 5		foxi1m809/m809	facial ganglion absent, abnormal glossopharyngeal ganglion absent, abnormal vagal ganglion decreased size, abnormal vagal ganglion lacks parts or has fewer parts of type vagal ganglion, abnormal ventral anterior lateral line ganglion absent, abnormal
	Fig. 6		foxi1m809/m809	neurogenic field apoptotic process increased process quality, abnormal neurogenic placode apoptotic process increased process quality, abnormal
Nissen et al., 2003	Fig. 1		foxi1hi3747Tg	otic vesicle decreased size, abnormal otic vesicle development process quality, abnormal otic vesicle split, abnormal
	Fig. 4		foxi1hi3747Tg	neural crest cell migration process quality, abnormal
	Fig. 5		foxi1hi3747Tg	ceratohyal cartilage hypoplastic, abnormal hyomandibula hypoplastic, abnormal palatoquadrate cartilage hypoplastic, abnormal pharyngeal arch 3 hypoplastic, abnormal pharyngeal arch 4 hypoplastic, abnormal
	Fig. 8		foxi1hi3747Tg	pharyngeal pouch 1 apoptotic process increased process quality, abnormal pharyngeal pouch 2 apoptotic process increased process quality, abnormal
Solomon et al., 2003	Fig. 1		WT + MO2-foxi1 ,   foxi1em1/em1	embryonic viscerocranium morphogenesis disrupted, abnormal mandibular arch skeleton decreased size, abnormal mouth structure, abnormal otic vesicle decreased size, abnormal otic vesicle development disrupted, abnormal whole organism lacks parts or has fewer parts of type otic vesicle, abnormal
	Fig. 8		foxi1em1/em1	ceratohyal cartilage decreased length, abnormal ceratohyal cartilage increased thickness, abnormal ceratohyal cartilage orientation ceratohyal cartilage, abnormal embryonic viscerocranium morphogenesis disrupted, abnormal pharyngeal arch 3-7 orientation whole organism anterior-posterior axis, abnormal pharyngeal arch anterior-posterior axis decreased length, abnormal pharyngeal arch morphology, abnormal vagal neural crest decreased distance hyoid neural crest, abnormal
	text only		foxi1em1/em1	whole organism viability, abnormal
Guo et al., 1999	Fig. 6		foxi1m809/m809	ceratohyal cartilage absent, abnormal mandibular arch skeleton malformed, abnormal Meckel's cartilage mislocalised ventrally, abnormal pharyngeal arch 2 skeleton decreased size, abnormal pharyngeal arch 2 skeleton malformed, abnormal pharyngeal arch 3 skeleton absent, abnormal pharyngeal arch 4 skeleton absent, abnormal pharyngeal arch 5 skeleton decreased size, abnormal pharyngeal arch 6 skeleton decreased size, abnormal pharyngeal arch 7 skeleton decreased size, abnormal pharyngeal arch has fewer parts of type neuron, abnormal swim bladder absent, abnormal whole organism dead, abnormal whole organism lacks parts or has fewer parts of type hyosymplectic cartilage, abnormal
Malicki et al., 1996	Fig. 2		foxi1m271/m271 (AB)	inner ear decreased size, abnormal inner ear morphogenesis disrupted, abnormal inner ear split, abnormal otic placode split, abnormal otic vesicle protrusion morphology, abnormal otolith mislocalised, abnormal pillar of the semicircular canal aplastic, abnormal
Neuhauss et al., 1996	Fig. 2		foxi1m271/m271 (AB)	auditory capsule decreased size, abnormal basihyal cartilage decreased length, abnormal ceratobranchial cartilage bent, abnormal ceratohyal cartilage decreased length, abnormal cranial cartilage mislocalised posteriorly, abnormal hyosymplectic cartilage decreased size, abnormal pharyngeal arch 3-7 skeleton has fewer parts of type ceratobranchial cartilage, abnormal pharyngeal arch cartilage decreased length, abnormal pharyngeal arch cartilage mislocalised posteriorly, abnormal
	Table 1		foxi1m271/m271 (AB)	inner ear decreased size, abnormal inner ear duplicated, abnormal inner ear malformed, abnormal