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ZFIN ID: ZDB-GENE-990415-14

Mapping Details

Gene Name: apolipoprotein A-Ia
Symbol: apoa1a
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN Gbrowse 5 37,978,501 - 37,981,521 GRCz11
Ensembl 5 37,978,501 - 37,981,521 GRCz11
Vega 5 37,378,348 - 37,381,368 GRCv10
NCBI Map Viewer 5 37,978,512 - 37,981,518 GRCz11
UCSC 5 - GRCv10
Mapped Clones containing apoa1a
CH211-139A5 Chr: 5 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Citations
sa10582 5 37,981,062 GRCz11 Busch-Nentwich et al., 2013
5 37,380,909 GRCz10 Busch-Nentwich et al., 2013
5 39,581,519 Zv9 Busch-Nentwich et al., 2013

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
5 192.2 cR apoa Loeb/NIH/5000/4000 (LN54) Dawid, Igor B. Data
5 81.6 cM apoa Heat Shock (HS) Woods, Ian G. Data
5 64.71 cM apoa Gates et al (GAT) Talbot, William S. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
dmrt2a GENE 5 Rajarao et al., 2002 Rajarao, et al. (2002. Dev Dyn 223:254-261.) reports mapping atp1b2b to LG05 close to apoa, ins, terra, epd, and zehn1245 at position 87.8 cM on the HS mapping panel. They confirm this linkage assignment by mapping atp1b2b to LG05 near z8122 on the T51 mapping panel.
z8122 SSLP 5 Rajarao et al., 2002 Rajarao, et al. (2002. Dev Dyn 223:254-261.) reports mapping atp1b2b to LG05 close to apoa, ins, terra, epd, and zehn1245 at position 87.8 cM on the HS mapping panel. They confirm this linkage assignment by mapping atp1b2b to LG05 near z8122 on the T51 mapping panel.
atp1b2b GENE 5 Rajarao et al., 2002 Rajarao, et al. (2002. Dev Dyn 223:254-261.) reports mapping atp1b2b to LG05 close to apoa, ins, terra, epd, and zehn1245 at position 87.8 cM on the HS mapping panel. They confirm this linkage assignment by mapping atp1b2b to LG05 near z8122 on the T51 mapping panel.
ins GENE 5 Rajarao et al., 2002 Rajarao, et al. (2002. Dev Dyn 223:254-261.) reports mapping atp1b2b to LG05 close to apoa, ins, terra, epd, and zehn1245 at position 87.8 cM on the HS mapping panel. They confirm this linkage assignment by mapping atp1b2b to LG05 near z8122 on the T51 mapping panel.
zehn1245 EST 5 Rajarao et al., 2002 Rajarao, et al. (2002. Dev Dyn 223:254-261.) reports mapping atp1b2b to LG05 close to apoa, ins, terra, epd, and zehn1245 at position 87.8 cM on the HS mapping panel. They confirm this linkage assignment by mapping atp1b2b to LG05 near z8122 on the T51 mapping panel.
epd GENE 5 Rajarao et al., 2002 Rajarao, et al. (2002. Dev Dyn 223:254-261.) reports mapping atp1b2b to LG05 close to apoa, ins, terra, epd, and zehn1245 at position 87.8 cM on the HS mapping panel. They confirm this linkage assignment by mapping atp1b2b to LG05 near z8122 on the T51 mapping panel.

OTHER MAPPING INFORMATION
Chr 5 Rajarao et al., 2002 Rajarao, et al. (2002. Dev Dyn 223:254-261.) reports mapping atp1b2b to LG05 close to  ...
Markers Encoded by apoa1a
fb33f01 Chr: 5 Details