Genomic Feature

um209

ID
ZDB-ALT-160721-17
Name
um209
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one delins (1)
Protocol
embryos treated with
Lab of Origin
Lawson Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Variants
Variant Type
Delins
Variant Location
Chr 17: 22686843 - 22690039 (GRCz11) (1) Details
Nucleotide change
TTCTACCTCTGTCTATCACATGTGACAGGAAACTGACCTCTGCATTCTCAGAGGGTTTAAAAACTCCTCCATCACCACTGGTACAGACAGATTAAAATAGAGAAGCAAAATCATCTCTACCTCAGCTACCACATCCTCTGTTTTTCCCACTCTAGTTTTTTGTAACTGTAAACTGCTTGTCTTTATTGTGCACTGAACTCTACTAGTATTCAAAAACCACCCAAATGCATGACTCACACTCATAGATGTGCAGAACAGCACATACAAGCTTGGTCTTCTTCAAACAGGAGCATTTGATACGGCTAAAACATGCACATCATTCACGAGCTCCTGATCCATAGAATATTATTTTATTGATCAGATTATCTATGGCACAGTACATCTAGTATGTAATCATGTATCAATACAAAAGCATTTTCCTTTGCACAGAAACAACGTGTCTGACACTGCACTCAAATCAGAGAGAAAACACACACACACGCACACTCATTATTTGTCTGTTTATCCTCCCTGCTGTCAGAAAGGAGGAACTGTAGTGAAAAAGTGTCCAAATATCTGCGAACTGCCTGTTCCCATAAGGTCCAGAATTTGAAAACTGCAGATGGGTTTCAGAGTCTATCATTCTTCTCTGTTAATTCTCTCTTAATAGAAAAATATTTCATACTTCCCGTTTTTCCATTTTATTGCAGATTTTTTTTTCAATTGGTGGGCAAATTCTGAAGGAGATGTTCTGTTGCCCTGTGACGTTCTTGTTTGTCCAGTAGGGTCTTTCCCTATGTGCATCCTTATAATCACAGCCAGGCAGTGCTCGATGTAATTTCAGTTGCTGGGGAAACATACTGTCCTTTGGCTGGTGACCACATCCTGCAAGGATGCAAATCAGGTGTATCCATGATTCGTTCTCTTTATGTCCAGAGATCTGTTTTGAACTGACATCCATTGCGTTTGTGTATATCCGAATAGGTCAGAGGTCAAAGAGTAAGCGTCACTGTCTCTGACTGACGCTGCCCAGTGTCATCTTCCACCATCTTCTCTGTAAGACATCAACCCTGCTGTCATATCTTCGTCGGACCCCACCCCTCACCTCATCCACGTGTGGATCCTCCTCACAGAGTTGTGTAGATGTAAACAAACACAATGACGAAGAGGTTCAAGAAGGTGCCTATGATCCCCAGAAGGGCCAATATGGACTCCTCTCGCTCCTCTTTACCCTCTTGCGCCCGAACCTCCTCTATACTGACAGTGGTCGTCCCCATTCTGACCCCCCCACCTCTGTCTCCAGGGTGCTTATCTGTGGAGAAACAGGAGAGCAGCATGAGATGATATTTAATCAACAAGGAGTGGAAGCTTCTGTGGTTCCATCCAACACTTATGTTCTCAGATGGCCACCAGTAGTGCTCATCCAGAGGCCAGACCAAACACTCAGTGAAGCAACTCCGAGGGTGAGATTTCCCTCTACACTGATTGCCCAGCTGCGAGTATGGCGTAATGAACACAAAAGAGGATGTCTCCCCCTCACCTCAGTGATGGATTTCCCCCTCAGAAAATGATATTTCCCTGCGGAGCTGCTACAACAAGGCGACTCTTGGCAGCTGAGATGATTTACTATCCATTTAAGCCATCTCACTTGCTGTTTGCCTCTGCCATGCACACTAAATGATTTCTCTTTTCTCATCCCGTCCTTCCTTAGCTTACGGTTTAGCTTGGTACCATGTTCATTGGAGCACATGTGGAAGTGTCTGCTTCCAGATACCAGAACATTCATCTCAATGAACATCATTAAACCCTACAACTCAGCAATGTGGACAACAAGCCTTGTAGACAGTCTGACACATACAGTGGAGGGAACACTAGACAAAAGCAAGTACAATATGAAAATAGGGAGTCTTACCCTACGGCGTGGGAGATCTGGGGGAAGATCCAGCATGCTGTGGTCTCATCACAGGAGATGCATATCTGGGCTGGCGGCAACATGAGGGCCAGGTGGCCAAACATCCGATATCCCCAAGACCGTAAAGAAGGAAAAAAGAGAAATTGAGAGGTGGAGAGAGAGAGAAGGTCTACAACAGCGTCTCCTTGAGCCGTGTGCGTTACGCAGACAACAATCTCAGTCCCCAACGTCCCTCCCCTTCGCTCTCCCTCTCTACCTTTCTTTCTCTCTTTCTCTCCCTCTGGCTTTCTCTCGCTGTTTCTGTGTCAGTATTCCAGCCTCCTTACACATCACCAGCCATTCCTTTTGTTCCACGCTCATTCAGATCTTCATTTATTCTTCTTCTCATGGTTGTTTATTTATTTTTTTGTTCTTTGCTTGGACGCCTCACACCTTTCATTCAAGCGGGGCTCGGAGAAATCCGCTCCCTGCTCTCTTCCCCCCCTCCCTCTCCCTCGTTCTCCTTTTCCTTTTACCAAAATCCTCCTTAAAAAATCTCCTAGTCTCCCCTCCTTTCTCTCTCTTCCCTCCCTCTTGCTGTCACACTCTCTCGTTCTCTGCTCTGTCACTCTTGTCTATCTGACCCTTTTAGCATGTGAAAGTGAGGCGTCTCAGCATTTGTAGAAAAACTGGCCCCCACCTTCTCTCCTTTCCCTCCTCCGTGATTTCTTTCCCTCCTTTTGCGCTCCGCTTTTTCTGTGGGTGTAGAAGCCCTACAGATGTGCGTGGATGCCTCCGGATGCTCGGGAGATTGGCGATCTGTGGCTGCGAGCTCCCCACCCTGCCGTTCTCTGTCCGTAGCCGATGGCAGTCGTGTGGTTATAGGTCCCGTCTCGGAGCCTGAGAGCGCCGTGCATTGCATAACCAAGCAGAGCGACTGGTAACCGCGGAAACCGAGCGAGGGAGATCGGGAGGGTGGGCGGCGAGGAGGCTCACACGTCAAATGTCTTTATTGCCAAGAACAATGTAGAGCCACAGAGAGATGAGGAGCAGAGAACGATCCAAATTGAGAGTTGTGGAGCTGGGTCCTTTTCTTCTGAGTATTGATGATCCCATTGATCTCACAGGGCTTTTTTTCTACAAAAGACAGTCATATTTGGGAATAATGTTAAGCTATTAAATGCCTGTGTGTGAAAGGACTAATGTGTACATGTGCATGGGTGTCCAAACCATGTATTCTTTCATACTAGAGTTGTACAAATAAGGGTACCTTCTAATCTCTTTACTCAATCTCTTGTATATGTAGAGGCATCCATTGTTGTTGTAG/TAG
Variant Notes
3198 nt deletion + 3 nt insertion. Deletes entire transcript.
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
3 bp inserted / 3198 bp deleted (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
CTTTAAAACGCATATACAAGTTCTTAATAAGCTATGAACTAGTTTTGAGGGTTTACACTGATCTGAGAGTGGGTTGTAAAGTGTTCACACTGATCTGAGTGGAGGTTGAGAGATTGAGGCTGGTTTGAGAGCTGGTTTACACAGAGCCGTTGTGGTGGGGATTTGTATTTGATGATAAGCCCTGCAGGTACATGCTGATTTACAGGGTAGGCCTTTATTACAGCAGTGCCCTGTGGCTTTGGAATTTATTGAGGGACCTGAGACTAAGCGCAAAGCCCTGCTAACATTTCTGCAGGCAGATTTTTCTGAGCACACTTCAGTCTGACGTATTGCAACACACTTGGGTAGAGGGCAAACAGTGTTGCTATGTTTTCCTTGCAAAGATCTGCCACAAAAGCTCAATTTCATGCATGTTTAAATTGGTATGTGTGTGACAGTCGTGGGCTCTTTAGGGCACGTTCTGGTGCCTCATTCTCATTCATGAAGCTCCCATCAGCCAT
TTCTACCTCTGTCTATCACATGTGACAGGAAACTGACCTCTGCATTCTCAGAGGGTTTAAAAACTCCTCCATCACCACTGGTACAGACAGATTAAAATAGAGAAGCAAAATCATCTCTACCTCAGCTACCACATCCTCTGTTTTTCCCACTCTAGTTTTTTGTAACTGTAAACTGCTTGTCTTTATTGTGCACTGAACTCTACTAGTATTCAAAAACCACCCAAATGCATGACTCACACTCATAGATGTGCAGAACAGCACATACAAGCTTGGTCTTCTTCAAACAGGAGCATTTGATACGGCTAAAACATGCACATCATTCACGAGCTCCTGATCCATAGAATATTATTTTATTGATCAGATTATCTATGGCACAGTACATCTAGTATGTAATCATGTATCAATACAAAAGCATTTTCCTTTGCACAGAAACAACGTGTCTGACACTGCACTCAAATCAGAGAGAAAACACACACACACGCACACTCATTATTTGTCTGTTTATCCTCCCTGCTGTCAGAAAGGAGGAACTGTAGTGAAAAAGTGTCCAAATATCTGCGAACTGCCTGTTCCCATAAGGTCCAGAATTTGAAAACTGCAGATGGGTTTCAGAGTCTATCATTCTTCTCTGTTAATTCTCTCTTAATAGAAAAATATTTCATACTTCCCGTTTTTCCATTTTATTGCAGATTTTTTTTTCAATTGGTGGGCAAATTCTGAAGGAGATGTTCTGTTGCCCTGTGACGTTCTTGTTTGTCCAGTAGGGTCTTTCCCTATGTGCATCCTTATAATCACAGCCAGGCAGTGCTCGATGTAATTTCAGTTGCTGGGGAAACATACTGTCCTTTGGCTGGTGACCACATCCTGCAAGGATGCAAATCAGGTGTATCCATGATTCGTTCTCTTTATGTCCAGAGATCTGTTTTGAACTGACATCCATTGCGTTTGTGTATATCCGAATAGGTCAGAGGTCAAAGAGTAAGCGTCACTGTCTCTGACTGACGCTGCCCAGTGTCATCTTCCACCATCTTCTCTGTAAGACATCAACCCTGCTGTCATATCTTCGTCGGACCCCACCCCTCACCTCATCCACGTGTGGATCCTCCTCACAGAGTTGTGTAGATGTAAACAAACACAATGACGAAGAGGTTCAAGAAGGTGCCTATGATCCCCAGAAGGGCCAATATGGACTCCTCTCGCTCCTCTTTACCCTCTTGCGCCCGAACCTCCTCTATACTGACAGTGGTCGTCCCCATTCTGACCCCCCCACCTCTGTCTCCAGGGTGCTTATCTGTGGAGAAACAGGAGAGCAGCATGAGATGATATTTAATCAACAAGGAGTGGAAGCTTCTGTGGTTCCATCCAACACTTATGTTCTCAGATGGCCACCAGTAGTGCTCATCCAGAGGCCAGACCAAACACTCAGTGAAGCAACTCCGAGGGTGAGATTTCCCTCTACACTGATTGCCCAGCTGCGAGTATGGCGTAATGAACACAAAAGAGGATGTCTCCCCCTCACCTCAGTGATGGATTTCCCCCTCAGAAAATGATATTTCCCTGCGGAGCTGCTACAACAAGGCGACTCTTGGCAGCTGAGATGATTTACTATCCATTTAAGCCATCTCACTTGCTGTTTGCCTCTGCCATGCACACTAAATGATTTCTCTTTTCTCATCCCGTCCTTCCTTAGCTTACGGTTTAGCTTGGTACCATGTTCATTGGAGCACATGTGGAAGTGTCTGCTTCCAGATACCAGAACATTCATCTCAATGAACATCATTAAACCCTACAACTCAGCAATGTGGACAACAAGCCTTGTAGACAGTCTGACACATACAGTGGAGGGAACACTAGACAAAAGCAAGTACAATATGAAAATAGGGAGTCTTACCCTACGGCGTGGGAGATCTGGGGGAAGATCCAGCATGCTGTGGTCTCATCACAGGAGATGCATATCTGGGCTGGCGGCAACATGAGGGCCAGGTGGCCAAACATCCGATATCCCCAAGACCGTAAAGAAGGAAAAAAGAGAAATTGAGAGGTGGAGAGAGAGAGAAGGTCTACAACAGCGTCTCCTTGAGCCGTGTGCGTTACGCAGACAACAATCTCAGTCCCCAACGTCCCTCCCCTTCGCTCTCCCTCTCTACCTTTCTTTCTCTCTTTCTCTCCCTCTGGCTTTCTCTCGCTGTTTCTGTGTCAGTATTCCAGCCTCCTTACACATCACCAGCCATTCCTTTTGTTCCACGCTCATTCAGATCTTCATTTATTCTTCTTCTCATGGTTGTTTATTTATTTTTTTGTTCTTTGCTTGGACGCCTCACACCTTTCATTCAAGCGGGGCTCGGAGAAATCCGCTCCCTGCTCTCTTCCCCCCCTCCCTCTCCCTCGTTCTCCTTTTCCTTTTACCAAAATCCTCCTTAAAAAATCTCCTAGTCTCCCCTCCTTTCTCTCTCTTCCCTCCCTCTTGCTGTCACACTCTCTCGTTCTCTGCTCTGTCACTCTTGTCTATCTGACCCTTTTAGCATGTGAAAGTGAGGCGTCTCAGCATTTGTAGAAAAACTGGCCCCCACCTTCTCTCCTTTCCCTCCTCCGTGATTTCTTTCCCTCCTTTTGCGCTCCGCTTTTTCTGTGGGTGTAGAAGCCCTACAGATGTGCGTGGATGCCTCCGGATGCTCGGGAGATTGGCGATCTGTGGCTGCGAGCTCCCCACCCTGCCGTTCTCTGTCCGTAGCCGATGGCAGTCGTGTGGTTATAGGTCCCGTCTCGGAGCCTGAGAGCGCCGTGCATTGCATAACCAAGCAGAGCGACTGGTAACCGCGGAAACCGAGCGAGGGAGATCGGGAGGGTGGGCGGCGAGGAGGCTCACACGTCAAATGTCTTTATTGCCAAGAACAATGTAGAGCCACAGAGAGATGAGGAGCAGAGAACGATCCAAATTGAGAGTTGTGGAGCTGGGTCCTTTTCTTCTGAGTATTGATGATCCCATTGATCTCACAGGGCTTTTTTTCTACAAAAGACAGTCATATTTGGGAATAATGTTAAGCTATTAAATGCCTGTGTGTGAAAGGACTAATGTGTACATGTGCATGGGTGTCCAAACCATGTATTCTTTCATACTAGAGTTGTACAAATAAGGGTACCTTCTAATCTCTTTACTCAATCTCTTGTATATGTAGAGGCATCCATTGTTGTTGTAG/TAG CTAGCCAACATTCTGGGCTGTTCAATTAATGTCGTTTATCTTCGACTACCCTTTTCACCGATTCTTTTTGAAGTTTTGTT  ...
Additional Sequence
None
Fish
Supplemental Information
Genotyping protocol
None
Citations
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