Expression Summary

Expressions

Publication	Data		Expressed Genes	Anatomy
Osborn et al., 2020	Fig. 8		shha	axial chorda mesoderm
Goto et al., 2017	Fig. 1		vimr1	tail bud
			vimr2	tail bud
Morrow et al., 2017	Fig. 3		msgn1	paraxial mesoderm
	Fig. 4		fli1	vasculature
			lmo2	angioblastic mesenchymal cell
			myod1	myotome
			pax2a	pronephros
			tbx6	paraxial mesoderm
	Fig. 5		isl1a	spinal cord motor neuron
			sox2	intermediate mesoderm
Chung et al., 2015	Fig. 2		gata1a	(not) intermediate cell mass of mesoderm
			slc4a1a	(not) intermediate cell mass of mesoderm
Arrington et al., 2013	Fig. 5		fgf2	(not) forerunner cell group
Huang et al., 2013	Fig. 6		myod1	adaxial cell adaxial cell somite
			wt1a	pronephric glomerulus pronephric mesoderm
	Fig. 7		nkx2.5	heart
O'Neill et al., 2013	Fig. 2		myod1	myotome
			ntn1b	trunk muscle cell
			pcdh8	tail bud myoblast
			tbx6	tail bud myoblast
Warga et al., 2013	Fig. 1		drl	intermediate cell mass of mesoderm
			gata1a	nucleate erythrocyte
			hbbe2	nucleate erythrocyte
			lcp1	macrophage
			mpx	leukocyte
			spi1b	leukocyte
			tal1	intermediate cell mass of mesoderm
	Fig. 2		cdh5	endothelial cell
			fli1	endothelial cell
			gata1a	circulating cell
			jag2b	intermediate mesoderm
			pax2a	intermediate mesoderm
			spi1b	macrophage
			tal1	circulating cell
	Fig. 3		fli1	endothelial cell
			pax2a	pronephric mesoderm
			tal1	hematopoietic multipotent progenitor cell
	Fig. 5		gss	head kidney
			hoxb7a	tail bud
			hoxb8a	pronephros
			hoxc11b	pronephros
			hoxd13a	mesoderm posterior region
			jag2b	pronephros
			pax2a	pronephros
			wt1a	head kidney
	Fig. 6		aldh1a2	anatomical structure paraxial mesoderm
			bmp4	anatomical structure anatomical structure
			cdx1a	anatomical structure anatomical structure tail bud
			cdx4	anatomical structure anatomical structure
			chrd	anatomical structure
			fgf8a	anatomical structure paraxial mesoderm tail bud
			tbxta	anatomical structure notochord notochord
			wnt5b	anatomical structure anatomical structure paraxial mesoderm
			wnt8a	anatomical structure tail bud
	Fig. 7		il17rd	tail bud
			spry2	paraxial mesoderm presumptive rhombomere 4
			spry4	tail bud
	Fig. 8		gata1a	nucleate erythrocyte
			pax2a	pronephric mesoderm
			tbxta	tail bud
Fior et al., 2012	Fig. 1		myod1	somite
			tbx6	segmental plate anterior region
			tbxta	tail bud
			xirp2a	somite border
Mueller et al., 2010	Fig. 1		calm1a	intermediate mesoderm
			cebpa	intermediate mesoderm
			drl	intermediate mesoderm
			gb:bi430182	intermediate mesoderm
			gtpbp1	intermediate mesoderm
			hmbsa	intermediate mesoderm
	Fig. 2		aldh1a2	paraxial mesoderm
			bmp3	paraxial mesoderm
			fgfrl1a	paraxial mesoderm
			hsp90aa1.1	paraxial mesoderm
			rcan3	paraxial mesoderm
			unc45b	paraxial mesoderm
	Table 1		aldh1a2	paraxial mesoderm
			atp5f1e	paraxial mesoderm
			atp5mea	whole organism
			atp6v1e1b	neuroectoderm
			b2ml	whole organism
			bmp3	paraxial mesoderm
			calm1a	neuroectoderm
			ccdc28a	whole organism
			cebpa	anterior lateral plate mesoderm
			ciao2b	whole organism
			clstn1	Kupffer's vesicle
			cox14	whole organism
			ddx3xa	whole organism
			dnajc21	whole organism
			drl	intermediate mesoderm
			exosc4	paraxial mesoderm
			fgfrl1a	immature eye
			gb:bi430182	intermediate mesoderm
			gfod2	whole organism
			gtpbp1	intermediate mesoderm
			hebp2	neuroectoderm
			hmbsa	intermediate mesoderm
			hoxa11a	tail bud
			hsp90aa1.1	paraxial mesoderm
			jak2a	whole organism
			mrps6	whole organism
			nae1	whole organism
			ndufb2	paraxial mesoderm
			parp16	whole organism
			pdap1b	polster
			pebp1	whole organism
			pinx1	polster
			ptgesl	whole organism
			rcan3	paraxial mesoderm
			rnaseh2b	whole organism
			s1pr1	tail bud
			si:dkey-177p2.6	paraxial mesoderm
			slc1a3a	neuroectoderm
			tcf25	polster
			unc45b	paraxial mesoderm
			zeb2a	neuroectoderm
			zfyve21	whole organism
			zgc:136864	whole organism
			znf593	paraxial mesoderm
			znhit1	whole organism
Boldajipour et al., 2008	Fig. 6		ackr3b	neural rod
			cxcl12a	neural rod
			nanos3	primordial germ cell
Galloway et al., 2008	Fig. 1		gata1a	(not) vascular endothelium
			gata2a	vascular endothelium
			glcci1a	(not) vascular endothelium
			krcp	(not) vascular endothelium
			smchd1	(not) vascular endothelium
			tal1	vascular endothelium
Warga et al., 2007	Fig. 7		dld	neural plate
			pax2a	intermediate mesoderm
			tbxta	notochord
Amacher et al., 2002	Fig. 1		tbx16	(not) tail bud
			tbxta	tail bud
	Fig. 3		egr2b	rhombomere 3
			her1	(not) whole organism
			myod1	segmental plate
			pax2a	midbrain hindbrain boundary neural keel
			tbxta	notochord margin
			tpma	trunk musculature
	Fig. 4		egr2b	hindbrain neural plate
			isl1a	Rohon-Beard neuron
			pax2a	interneuron
			shha	axis
	Fig. 5		shha	brain ventral region
	Fig. 6		shha	medial floor plate
Essner et al., 2000	Fig. 3		pitx2	DEL (not) prechordal plate posterior region
Dheen et al., 1999	Fig. 6		tbx2b	axial mesoderm
Oates et al., 1999	Fig. 7		jak2a	(not) intermediate cell mass of mesoderm (not) lateral plate mesoderm
	Table 1		jak2a	(not) hematopoietic system
Kelly et al., 1995	Fig. 5		snai1a	tail bud
			wnt8a	tail bud