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ZIRC
ZFIN ID: ZDB-TSCRIPT-090929-18111
Transcript Name: sqstm1-202
Previous Name: sqstm1-001

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Transcript Type: mRNA
Annotation Status:
Strain: TU
Non Reference Strains:
Associated with Genes:
SEQUENCE
OTTDART00000037711 (1) [ Show ] (double-click sequence to select) [Download]
Select Analysis Tool
>tpe|OTTDART00000037711|OTTDARG00000027873|ZDB-GENE-040426-2204 sqstm1|OTTDARP00000030230 sqstm1-001 LG_ CU075768.4 Danio rerio protein_coding KNOWN, 1939 bp
ATACAGCACTGTCGGCTGAAGTAGGAAACGCATTTTCACG
CAGCCAACGCAGAGTCCCGTGCTCGAGAAACGCATTTTCT
ACTGCGCAACACTTCCAGAGGTTCAGGGAGAGAAGCTATT
TTCCGCTACGATGTCGATGACAGTGAAAGCTTACCTTATC
GGTAAGGAGGACTGCAACAAGGAGATCCGTCGCTTCGCCG
TGGATCAAGATGTCTCAACAAGTTTCGAGTATTTGCAGCG
AAAAGTGCTCGATGTTTTTGTCGGTCTCAGGACTGCGCCC
TTCCAAATGTACTATAAAGATGAAGATGGTGATATGATTG
CCTTTTCCTCTGACGATGAGCTAATGATGGGTTTGGCTCT
TGTGAAGGATGACACTTTCCGTCTCTTCATCAAGCAACGA
AAAGAGCACAAACGTGATTCTTCTCCTCATGGAATTCCTG
GGTTTCCGTTCACTACACCTCACTTTAGCCCTCCTGGTCC
CTGTCATATGGGTCCATCTCCAATGGGGCCTCCAGGACCA
CCTCATATGGGGGGTCCTCCTCACCACCCTCACCCAATGG
TGCACCCAGGTGTGACCTGTGACGGGTGTGATGGGCCGGT
GGCTGGAACCCGTTACAAGTGCACCGTTTGCCCCGATTAT
GACTTGTGCCCCACCTGCCAGAGCAAAGGCCTGCACAAGG
AGCATGCCCTCCTGCCCATCTTTCATCCTATGGCCAACGT
GTTTGAGTGGCTCCCTCGTGGGAAATTTTGGCGTAAGATG
AGACACTGCATGTGGGCAAATGCTCAAGCTCAGGCTCAAA
ACCAGCCTCAGCCAGGTCCATCTGGAGCGCAGCAAAACCA
GGATGCTCCTGAAAACCCAAATGAGAATGGTGCTACTGCC
TCTTCTCAGGCTAACGTGGAGTACCTAAAGAACATCGGAG
AAGAAGTGGCAGCCATGTTAAGCCCCCTTGGCATAGATGT
GGACATCGATGTTGAGCATGAGGGAAAGCGGACCAAAGTA
ACCCCAACTCCTCCTGCCTCCAGTGGACCATCCAGTGCTC
GGAGTGACAGTGGTTCTGTGGGGCTTCTTTCTAGAGGCTC
TGGTCCAGGAAGTCAGGCCACTGAAGAGAGCGTCAGTGAG
GGAACAAAGAAAGACCAATGTAGTGATGAGGAATGGACTC
ATCTTAGTGCTAAAGAGGTGGATCCTTCGACAGGAGAGCT
GCAGTCTCTTAGACTAGAGCAGGACGGGGCAGATCTTCCA
GCTCCACTAAATACTGCTTCTGGCACAAGCACCAGAGACG
GTCCCACTGGTCTGCGCGAGGCAGCTCTCTACCCACACCT
TCCTCAAGATGCAGACCCTAGGCTGGTGGAGTCTCTGTCT
CAGATGCTCTCCATGGGTTTCACCGATGAGGGTGGATGGC
TAACCAGACTGCTCCACACCAAGAATTACGACATCGGTGG
TGCTCTGGACACCATCCAGTACTCCAAAACACCAGGACAA
CAGAAGTAGAGGTGGAGCACAGGAATACAGAAGACCTGGG
CCATACTTAATATTTGAAGCTTCTGGCCTATTTTCTAACT
TAGTCTTTCTATACTTTTAAAATGATAAATTTCCACAAAT
ATTAACAATATCAATTACTCAGGTGACTAGTACATAGTTA
AGTTCATCATTGGGCTTATATATGCAAAATGTTTGTCTTT
AGCTTAACACTTGACATTATAAAGAACATTATTTTCATGT
ATGCATAATATTACGTAAAGGTTGTTAAGTAGAGATCTAT
ATTTGTGCAACTTCACTTTATGGATTTTCTGTTTGCATAA
TCAATAAGCAGTTTCTAGATCAAGCATAAACCTGGAGGGT
TTGTTAGTTTGAATAAACAGATGGAATCGGATTAATGTCG
CTGTTGGTCTTCTAAAATTCCTGTCTTTTCTATCTACAAT
AAAACACTTCTCTAAAACA

sqstm1 TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA sqstm1-202 1939
ncRNA sqstm1-003 (1)    Ensembl 531
sqstm1-004 (1)    Ensembl 1010
SEGMENT (CLONE AND PROBE) RELATIONSHIPS
sqstm1-202 Contained in:
[BAC] DKEY-177P5 (1) (order this)

Genome Resources: Vega_Trans:OTTDART00000037711 (1),  Ensembl_Trans:ENSDART00000140061 (1)
PROTEIN PRODUCTS No links to external site
ZEBRAFISH SUPPORTING SEQUENCES
Type Accession # Length (bp/aa) Analysis
RNA GenBank:EH999752 (1) 897 bp
GenBank:EH510853 (1) 859 bp
GenBank:DV586985 (1) 804 bp
GenBank:EH576188 (1) 799 bp
GenBank:CN505092 (1) 783 bp
GenBank:DT878786 (1) 763 bp
CITATIONS (2)