ZFIN Person: Gehrig, Jochen

ZFIN ID: ZDB-PERS-120608-20

Gehrig, Jochen

Email:	jochen.gehrig@kit.edu
URL:
Affiliation:	Liebel-Lab
Address:	Screening Center KIT Karlsruhe Institute of Technology Hermann-von-Helmholtz Platz 1, Building:0341, Room: 130 76344 Eggenstein-Leopoldshafen Germany
Country:	Germany
Phone:
Fax:
ORCID ID:

BIOGRAPHY AND RESEARCH INTERESTS

PUBLICATIONS

Westhoff, J.H., Steenbergen, P.J., Thomas, L.S.V., Heigwer, J., Bruckner, T., Cooper, L., Tönshoff, B., Hoffmann, G.F., Gehrig, J. (2020) In vivo High-Content Screening in Zebrafish for Developmental Nephrotoxicity of Approved Drugs. Frontiers in cell and developmental biology. 8:583

Steenbergen, P.J., Heigwer, J., Pandey, G., Tönshoff, B., Gehrig, J., Westhoff, J.H. (2020) A Multiparametric Assay Platform for Simultaneous In Vivo Assessment of Pronephric Morphology, Renal Function and Heart Rate in Larval Zebrafish. Cells. 9(5):

Gierten, J., Pylatiuk, C., Hammouda, O.T., Schock, C., Stegmaier, J., Wittbrodt, J., Gehrig, J., Loosli, F. (2020) Automated high-throughput heartbeat quantification in medaka and zebrafish embryos under physiological conditions. Scientific Reports. 10:2046

Thomas, L.S.V., Gehrig, J. (2020) Multi-template matching: a versatile tool for object-localization in microscopy images. BMC Bioinformatics. 21:44

Pandey, G., Westhoff, J.H., Schaefer, F., Gehrig, J. (2019) A Smart Imaging Workflow for Organ-Specific Screening in a Cystic Kidney Zebrafish Disease Model. International Journal of Molecular Sciences. 20(6)

Gehrig, J., Pandey, G., Westhoff, J.H. (2018) Zebrafish as a Model for Drug Screening in Genetic Kidney Diseases. Frontiers in pediatrics. 6:183

Basu, S., Hadzhiev, Y., Petrosino, G., Nepal, C., Gehrig, J., Armant, O., Ferg, M., Strahle, U., Sanges, R., Müller, F. (2016) The Tetraodon nigroviridis reference transcriptome: developmental transition, length retention and microsynteny of long non-coding RNAs in a compact vertebrate genome. Scientific Reports. 6:33210

Zaucker, A., Bodur, T., Roest Crollius, H., Hadzhiev, Y., Gehrig, J., Loosli, F., Watson, C., Müller, F. (2014) Description of Embryonic Development of Spotted Green Pufferfish (Tetraodon nigroviridis). Zebrafish. 11(6):509-17

Wittbrodt, J.N., Liebel, U., Gehrig, J. (2014) Generation of orientation tools for automated zebrafish screening assays using desktop 3D printing. BMC Biotechnology. 14:36

Haberle, V., Li, N., Hadzhiev, Y., Plessy, C., Previti, C., Nepal, C., Gehrig, J., Dong, X., Akalin, A., Suzuki, A.M., van IJcken, W.F., Armant, O., Ferg, M., Strähle, U., Carninci, P., Müller, F., and Lenhard, B. (2014) Two independent transcription initiation codes overlap on vertebrate core promoters. Nature. 507(7492):381-385

Westhoff, J.H., Giselbrecht, S., Schmidts, M., Schindler, S., Beales, P.L., Tönshoff, B., Liebel, U., and Gehrig, J. (2013) Development of an Automated Imaging Pipeline for the Analysis of the Zebrafish Larval Kidney. PLoS One. 8(12):e82137

Nepal, C., Hadzhiev, Y., Previty, C., Haberle, V., Li, N., Takahashi, H., Suzuki, A.M., Sheng, Y., Abdelhamid, R., Anand, S., Gehrig, J., Akalin, A., Kockx, C., van der Sloot, A., van Ijcken, W., Armant, O., Rastegar, S., Straehle, U., Stupka, E., Carninci, P., Lenhard, B., and Muller, F. (2013) Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis. Genome research. 23(11):1938-50

Peravali, R., Gehrig, J., Giselbrecht, S., Lutjohann, D.S., Hadzhiev, Y., Muller, F., and Liebel, U. (2011) Automated feature detection and imaging for high-resolution screening of zebrafish embryos. Biotechniques. 50(5):319-324

Gehrig, J. (2010) Function of core promoters in differential gene regulation during embryogenesis. Ph.D. Thesis.

Gehrig, J., Reischl, M., Kalmar, E., Ferg, M., Hadzhiev, Y., Zaucker, A., Song, C., Schindler, S., Liebel, U., and Muller, F. (2009) Automated high-throughput mapping of promoter-enhancer interactions in zebrafish embryos. Nature Methods. 6(12):911-916

Ferg, M., Sanges, R., Gehrig, J., Kiss, J., Bauer, M., Lovas, A., Szabo, M., Yang, L., Straehle, U., Pankratz, M.J., Olasz, F., Stupka, E., and Müller, F. (2007) The TATA-binding protein regulates maternal mRNA degradation and differential zygotic transcription in zebrafish. The EMBO journal. 26(17):3945-3956

NON-ZEBRAFISH PUBLICATIONS