ZFIN ID: ZDB-GENE-990415-121
Gene Name: homeobox D9a
Gene Symbol: hoxd9a    Nomenclature History

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Previous Names: hoxd9, z-28

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 9 Mapping Details/Browsers
Description: Predicted to have DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in embryonic skeletal system morphogenesis; positive regulation of transcription by RNA polymerase II; and regionalization. Predicted to localize to nucleus. Is expressed in mesenchyme; pectoral fin; pectoral fin bud; somite; and visual system. Orthologous to human HOXD9 (homeobox D9).
Genome Resources: Alliance (1),  Gene:30350 (1),  Ensembl(GRCz11):ENSDARG00000059274 (1)
GENE EXPRESSION
All Expression Data: 12 figures from 5 publications
Directly Submitted Expression Data: 6 figures (6 images) from Thisse et al., 2004 [MGC:66083]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Hatching:Pec-fin (60.0h-72.0h)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa18397 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH hoxd9a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH hoxd9a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process multicellular organism development (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 12)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA hoxd9a-201 (1)    Ensembl 1407
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    CONSTRUCTS WITH SEQUENCES FROM hoxd9a No data available
    MARKER RELATIONSHIPS
    hoxd9a Contained in: [BAC] RP71-78H1 (1)
    hoxd9a Encodes: [cDNA] MGC:66083 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_131126 (1) 1410 nt
    Genomic GenBank:BX322661 (1) 146527 nt
    Select Tool
    Polypeptide UniProtKB:Q9PWM6 (1) 262 aa
    Sequence Information (all 15)
    ORTHOLOGY for hoxd9a ( Chr: 9 )
    CITATIONS (37)