ZFIN ID: ZDB-GENE-990415-121
Gene Name: homeobox D9a
Gene Symbol: hoxd9a
Sequence Ontology ID : SO:0000704

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Previous Names: hoxd9, z-28

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(Including Attributions)
Location: Chr: 9 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have sequence-specific DNA binding activity; predicted to be involved in multicellular organism development, regulation of transcription, DNA-templated, and transcription, DNA-templated;  ...
GENE EXPRESSION
All Expression Data: 12 figures from 5 publications
Directly Submitted Expression Data: 6 figures (6 images) from Thisse et al., 2004 [MGC:66083]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa18397 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH hoxd9a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH hoxd9a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process multicellular organism development (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001356 (1)
  • InterPro:IPR006711 (1)
  • InterPro:IPR009057 (1)
  • InterPro:IPR017112 (1)
  • InterPro:IPR017970 (1)
  • InterPro:IPR020479 (1)
  • PROSITE:PS00027 (1)
  • PROSITE:PS50071 (1)
  • Pfam:PF00046 (1)
  • Pfam:PF04617 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA hoxd9a-201 (1) 1407
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDS
    Addgene
    CONSTRUCTS WITH SEQUENCES FROM hoxd9a No data available
    MARKER RELATIONSHIPS
    hoxd9aContained in: [BAC] RP71-78H1 (1) (order this)
    hoxd9aEncodes: [cDNA] MGC:66083 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131126 (1) 1410bp
    Genomic GenBank:BX322661 (1) 146527bp
    Select Tool
    Polypeptide UniProtKB:Q9PWM6 (1) 262aa
    Sequence Clusters UniGene:75792 (1)
    Sequence Information (all 16)
    OTHER hoxd9a GENE PAGES
  • Alliance (1)
  • Gene:30350 (1)
  • VEGA:OTTDARG00000017435 (1)
  • Ensembl(GRCz11):ENSDARG00000059274 (1)
  • ORTHOLOGY for hoxd9a (Chr: 9)
    CITATIONS (35)