ZFIN ID: ZDB-GENE-990415-106
Gene Name: homeobox B6a
Gene Symbol: hoxb6a
Sequence Ontology ID : SO:0000704

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Previous Names: hox-2.2, hox-B6, hoxb6, z-39, ZF-22, ZF22

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(Including Attributions)
Location: Chr: 3 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have RNA polymerase II distal enhancer sequence-specific DNA binding activity, proximal promoter DNA-binding activity transcription activator activity, RNA polymerase II-specific, and  ...
GENE EXPRESSION
All Expression Data: 15 figures from 9 publications
Directly Submitted Expression Data: 6 figures (12 images) from Thisse et al., 2005 [eu443]
Wild-type Stages, Structures: Segmentation:1-4 somites (10.33h-11.66h) to Hatching:Long-pec (48.0h-60.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Targeting reagents:
PHENOTYPE No data available
DISEASE ASSOCIATED WITH hoxb6a HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH hoxb6a VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process multicellular organism development (more)
Cellular Component nucleus (more)
Molecular Function DNA binding (more)
GO Terms (all 6)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001356 (1)
  • InterPro:IPR001827 (1)
  • InterPro:IPR009057 (1)
  • InterPro:IPR017970 (1)
  • InterPro:IPR017995 (1)
  • InterPro:IPR020479 (1)
  • PROSITE:PS00027 (1)
  • PROSITE:PS00032 (1)
  • PROSITE:PS50071 (1)
  • Pfam:PF00046 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA hoxb6a-201 (1) 989
    ottdart00000001813 (1) 965
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDS
    Addgene
    CONSTRUCTS WITH SEQUENCES FROM hoxb6a No data available
    MARKER RELATIONSHIPS
    hoxb6aContained in: [BAC] CH211-72A16 (1) (order this)
    [PAC] BUSM1-254O17 (2) (order this)
    hoxb6aEncodes: [EST] eu443 (1)
    [cDNA] MGC:194190 (1) (order this), MGC:194214 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131119 (1) 687bp
    Genomic GenBank:BX927395 (1) 152987bp
    Select Tool
    Polypeptide UniProtKB:B3DHP5 (1) 228aa
    Sequence Clusters UniGene:132967 (1)
    Sequence Information (all 26)
    OTHER hoxb6a GENE PAGES
  • Alliance (1)
  • Gene:30341 (1)
  • VEGA:OTTDARG00000001699 (1)
  • VEGA:OTTDARG00000019822 (1)
  • Ensembl(GRCz11):ENSDARG00000010630 (2)
  • ORTHOLOGY for hoxb6a (Chr: 3)
    CITATIONS (46)