ZFIN ID: ZDB-GENE-980528-2060
Gene Name: goosecoid
Gene Symbol: gsc
Sequence Ontology ID : SO:0000704

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Previous Names: etID102410.17 (1), etID5964.17 (1), ik:tdsubc_1c10 (1), ik:tdsubc_2g4 (1), ik:tdsubc_2h11, xx:tdsubc_1c10, xx:tdsubc_2g4, xx:tdsubc_2h11, zgc:101595, ZGSC

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(Including Attributions)
Location: Chr: 17 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 337 figures from 253 publications
Directly Submitted Expression Data: 8 figures (68 images) from Thisse et al., 2004 [MGC:101595]
  1 figure (1 image) from Thisse et al., 2005 [eu565]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
  anatomical structure, anterior axial hypoblast, auditory capsule, axial chorda mesoderm (all 74) expand
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa32143 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • European Zebrafish Resource Center (EZRC) (order this)
  • x59 Indel Unknown Unknown TALEN
    Targeting reagents: MO1-gsc (1), MO2-gsc (1), MO3-gsc (1), TALEN1-gsc (1)
    PHENOTYPE
    Data: 5 figures from 2 publications
    Observed in: eye, head, head morphogenesis, otic epithelium basal part of cell (all 12) expand
    DISEASE ASSOCIATED WITH gsc HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    Short stature, auditory canal atresia, mandibular hypoplasia, skeletal abnormalities 602471
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process anterior/posterior axis specification (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 13)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001356 (1)
  • InterPro:IPR009057 (1)
  • InterPro:IPR017970 (1)
  • PROSITE:PS00027 (1)
  • PROSITE:PS50071 (1)
  • Pfam:PF00046 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA gsc-001 (1) 1276
    gsc-002 (1) 1153
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDS
    Addgene
    CONSTRUCTS WITH SEQUENCES FROM gsc
    Tg(-1.8gsc:GFP), Tg(-3gsc:GFP), Tg(-4gsc:EGFP), Tg(-4gsc:EGFP-Hsa.HRAS), tg(-6gsc:egfp-caax) (all 9) expand
    MARKER RELATIONSHIPS
    gscContained in: [BAC] DKEY-49F1 (1) (order this)
    gscEncodes: [EST] eu565 (1), tdsubc_1c10 (1), tdsubc_2g4 (1), tdsubc_2h11 (1)
    [cDNA] MGC:101595 (1) (order this), MGC:192260 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131017 (1) 1252bp
    Genomic GenBank:AL772209 (1) 202805bp Blast at MegaBLAST
    Polypeptide UniProtKB:B2GRD3 (1) 240aa
    Sequence Clusters UniGene:289 (1)
    Sequence Information (all 30)
    OTHER gsc GENE PAGES
  • Alliance (1)
  • Gene:30212 (1)
  • VEGA:OTTDARG00000002180 (1)
  • Ensembl(GRCz10):ENSDARG00000059073 (1)
  • ORTHOLOGY for gsc (Chr: 17)
    CITATIONS (475)