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ZIRC
ZFIN ID: ZDB-GENE-980526-533
Gene Name: homeobox C5a
Gene Symbol: hoxc5a
Sequence Ontology ID : SO:0001217

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Previous Names: hox-3.4, hoxc5, ZF-25, etID309822.23 (1), z-142

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(Including Attributions)
Location: Chr: 23 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have RNA polymerase II distal enhancer sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification. Predicted to localize to the nucleus.  ...
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Wild-type Stages, Structures: Pharyngula:Prim-5 (24.0h-30.0h) to Pharyngula:Prim-5 (24.0h-30.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la014424Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH hoxc5a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH hoxc5a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process multicellular organism development (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 9)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA hoxc5a-201 (1) 956
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS
    Addgene
    CONSTRUCTS WITH SEQUENCES FROM hoxc5a No data available
    MARKER RELATIONSHIPS
    hoxc5a Contained in: [BAC] DKEY-81P22 (1) (order this)
    hoxc5a Encodes: [cDNA] MGC:195217 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131144 (1) 699 bp
    Genomic GenBank:BX005254 (1) 160012 bp
    Select Tool
    Polypeptide UniProtKB:B3DIP7 (1) 233 aa
    Sequence Clusters UniGene:132198 (1)
    Sequence Information (all 24)
    ORTHOLOGY for hoxc5a ( Chr: 23 )
    CITATIONS (49)