Gene

smarcc1a

ID
ZDB-GENE-080514-3
Name
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1a
Symbol
smarcc1a Nomenclature History
Previous Names
  • smarcc1
Type
protein_coding_gene
Location
Chr: 16 Mapping Details/Browsers
Description
Predicted to have histone binding activity. Involved in definitive hemopoiesis and heart morphogenesis. Localizes to cytoplasm and nucleus. Is expressed in head and tail bud. Orthologous to human SMARCC1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
2 figures from 2 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
2 figures from 2 publications
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With smarcc1a Human Ortholog
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
{Hydrocephalus, congenital, 5, susceptibility to} 620241
Associated With smarcc1a Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR001005 SANT/Myb domain
Domain IPR007526 SWIRM domain
Domain IPR017884 SANT domain
Domain IPR032448 SMARCC, SWIRM-associated domain
Domain IPR032450 SMARCC, N-terminal
Domain IPR032451 SMARCC, C-terminal
Homologous_superfamily IPR009057 Homeobox-like domain superfamily
Homologous_superfamily IPR036388 Winged helix-like DNA-binding domain superfamily
Homologous_superfamily IPR036420 BRCT domain superfamily
Domain Details Per Protein
Protein Length BRCT domain superfamily Homeobox-like domain superfamily SANT domain SANT/Myb domain SMARCC, C-terminal SMARCC, N-terminal SMARCC, SWIRM-associated domain SWIRM domain Winged helix-like DNA-binding domain superfamily
UniProtKB:F1Q9K1 1089
UniProtKB:A0A8M2B4M4 1081
Transcripts
Genome Browsers
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations