ZFIN ID: ZDB-GENE-070112-1122
Gene Name: actin binding LIM protein family, member 3
Gene Symbol: ablim3    Nomenclature History

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Previous Names: fb51g06, im:7152284, si:dkey-23o10.3, wu:fb51g06 (1), zgc:158673, zgc:198293

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 14 Mapping Details/Browsers
Description: Predicted to have actin filament binding activity. Predicted to be involved in cilium assembly and lamellipodium assembly. Predicted to localize to stress fiber. Is expressed in notochord and somite. Orthologous to human ABLIM3 (actin binding LIM protein family member 3).
Genome Resources: Alliance (1),  Gene:566821 (1),  Ensembl(GRCz11):ENSDARG00000029772 (2),  Ensembl(GRCz11):ENSDARG00000088168 (1)
GENE EXPRESSION
Directly Submitted Expression Data: 3 figures (4 images) from Thisse et al., 2004 [IMAGE:7152284]
Wild-type Stages, Structures: Segmentation:1-4 somites (10.33h-11.66h) to Segmentation:14-19 somites (16.0h-19.0h)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la019037Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa184 Point Mutation Unknown Premature Stop ENU
    sa306 Point Mutation Unknown Premature Stop ENU
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH ablim3 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH ablim3 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process actin cytoskeleton organization (more)
    Cellular Component actin cytoskeleton (more)
    Molecular Function actin binding (more)
    GO Terms (all 10)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA ablim3-202 (1)    Ensembl 3959
    ablim3-204 (1)    Ensembl 865
    ablim3-207 (1)    Ensembl 2128
    ncRNA ablim3-002 (1)    Ensembl 606
    ottdart00000038856 (1)    Ensembl 581
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM ablim3 No data available
    MARKER RELATIONSHIPS
    ablim3 Contained in: [BAC] CH73-356I6 (1), CH211-20H7 (1), CH211-232M8 (1), DKEY-23O10 (1) (order this), DKEY-192O1 (1) (order this)
    ablim3 Encodes: [EST] fb51g06, IMAGE:7152284
    [cDNA] MGC:158673 (1), MGC:198293 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001080598 (1) 2733 nt
    Genomic GenBank:CU151895 (1) 231250 nt Blast at MegaBLAST
    Polypeptide UniProtKB:A0A0R4IXJ5 (1) 684 aa
    Sequence Information (all 40)
    ORTHOLOGY for ablim3 ( Chr: 14 )
    CITATIONS (29)