ZFIN ID: ZDB-GENE-050506-42
Gene Name: SR-related CTD-associated factor 4b
Gene Symbol: scaf4b    Nomenclature History

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Previous Names: im:6900467 (1), si:ch211-245g11.2 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 15 Mapping Details/Browsers
Description: Predicted to have RNA binding activity. Orthologous to human SCAF4 (SR-related CTD associated factor 4).
Genome Resources: Alliance (1),  Gene:552961 (1),  Ensembl(GRCz11):ENSDARG00000018854 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:6900467]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
ct133aGt Transgenic Insertion Unknown Unknown DNA
sa2824 Point Mutation Unknown Premature Stop ENU
sa17523 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa19125 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa35985 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH scaf4b HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH scaf4b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process biological_process (more)
    Molecular Function nucleic acid binding (more)
    GO Terms (all 3)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Domain IPR000504 RNA recognition motif domain
    Domain IPR006569 CID domain
    Domain IPR006903 RNA polymerase II-binding domain
    Homologous_superfamily IPR008942 ENTH/VHS
    Homologous_superfamily IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
    Domain IPR034369 SCAF4, RNA recognition motif
    Homologous_superfamily IPR035979 RNA-binding domain superfamily
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA scaf4b-201 (1)    Ensembl 2350
    scaf4b-204 (1)    Ensembl 3473
    ncRNA scaf4b-002 (1)    Ensembl 863
    scaf4b-003 (1)    Ensembl 599
    Browsers: NCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM scaf4b No data available
    MARKER RELATIONSHIPS
    scaf4b Contained in: [BAC] CH211-245G11 (1)
    scaf4b Encodes: [EST] IMAGE:6900467 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_017351261 (1)
    Genomic GenBank:BX322538 (1) 159879 bp
    Select Tool
    Polypeptide UniProtKB:R4GE22 (1) 905 aa
    Sequence Information (all 24)
    ORTHOLOGY for scaf4b ( Chr: 15 )
    CITATIONS (19)