ZFIN ID: ZDB-GENE-040801-149
Gene Name: ATG5 autophagy related 5 homolog (S. cerevisiae)
Gene Symbol: atg5
Sequence Ontology ID : SO:0000704

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Previous Names: apg5l (1), zgc:100934 (1)

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(Including Attributions)
Location: Chr: 16 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 10 figures from 8 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7145909]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa22749 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa36038 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE
    Data: 17 figures from 4 publications
    Observed in:
    DISEASE ASSOCIATED WITH atg5 HUMAN ORTHOLOG No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process autophagosome assembly (more)
    Cellular Component cytoplasm (more)
    Molecular Function CONTRIBUTES_TO Atg8 ligase activity (more)
    GO Terms (all 14)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR007239 (1)
  • Pfam:PF04106 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA atg5-001 (1) 2264
    atg5-002 (1) 2222
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM atg5
    MARKER RELATIONSHIPS
    atg5Contained in: [BAC] DKEY-11F5 (1) (order this)
    atg5Encodes: [EST] IMAGE:7145909 (1) (order this)
    [cDNA] MGC:100934 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_205618 (1) 2202bp
    Genomic GenBank:AL928573 (1) 244471bp Blast at MegaBLAST
    Polypeptide UniProtKB:F1RDC0 (1) 275aa
    Sequence Clusters UniGene:12686 (1)
    Sequence Information (all 19)
    OTHER atg5 GENE PAGES
  • Alliance (1)
  • Gene:494180 (1)
  • VEGA:OTTDARG00000034037 (1)
  • Ensembl(GRCz10):ENSDARG00000023396 (1)
  • ORTHOLOGY for atg5 (Chr: 16)
    CITATIONS (39)