ZFIN ID: ZDB-GENE-040801-149
Gene Name: ATG5 autophagy related 5 homolog (S. cerevisiae)
Gene Symbol: atg5
Previous Names: apg5l (1), zgc:100934 (1)
Location: Chr: 16 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 6 figures from 4 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7145909]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Day 4 (96.0h-120.0h)
  eye, floor plate, forebrain, head (all 13) expand
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa22749 Point Mutation Unknown Unknown ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa36038 Point Mutation Unknown Unknown ENU
    Targeting reagents: MO1-atg5 (1), MO2-atg5 (1), MO3-atg5 (1), MO4-atg5 (1), MO5-atg5 (1) (all 6) expand
    PHENOTYPE
    Data: Fig. 3 from Hu et al., 2011
    Observed in: blood, common cardinal vein, embryo development, extension (all 14) expand
    DISEASE ASSOCIATED WITH atg5 HUMAN ORTHOLOGNo data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process nervous system development (more)
    Cellular Component cytoplasm (more)
    Molecular Function CONTRIBUTES_TOAtg8 ligase activity (more)
    GO Terms (all 12)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR007239 (1)
  • Pfam:PF04106 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA atg5-001 (1) 2264
    atg5-002 (1) 2222
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYSNo data available
    ANTIBODIES
    Ab1-atg5 (1)
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM atg5 No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    atg5Contained in: [BAC] DKEY-11F5 (1) (order this)
    atg5Encodes: [EST] IMAGE:7145909 (1) (order this)
    [cDNA] MGC:100934 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001009914 (1) 2279bp
    Genomic GenBank:AL928573 (1) 244471bp Blast at MegaBLAST
    Polypeptide UniProtKB:F1RDC0 (1) 275aa
    Sequence Clusters UniGene:12686 (1)
    Sequence Information (all 18)
    OTHER atg5 GENE PAGES
  • Gene:494180 (1)
  • VEGA:OTTDARG00000034037 (1)
  • Ensembl(GRCz10):ENSDARG00000023396 (1)
  • ORTHOLOGY for atg5 (Chr: 16)
    Species Symbol Chromosome Accession # Evidence
    Human ATG5 6
  • Gene:9474
  • OMIM:604261
  • HGNC:589
  • Amino acid sequence comparison (1)
    Conserved genome location (synteny) (1)
    Download Curated Orthology
    CITATIONS (26)