ZFIN ID: ZDB-GENE-040429-1
Gene Name: SRY-box transcription factor 21b
Gene Symbol: sox21b    Nomenclature History

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Previous Name: zgc:110678

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 9 Mapping Details/Browsers
Description: Predicted to have DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Involved in lens development in camera-type eye. Predicted to localize to nucleus and transcription regulator complex. Is expressed in several structures, including central nervous system; inner ear; otic vesicle; solid lens vesicle; and testis. Orthologous to human SOX21 (SRY-box transcription factor 21).
Genome Resources: Alliance (1),  Gene:406246 (1),  Ensembl(GRCz11):ENSDARG00000008540 (2)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Sequence Targeting Reagents
Targeting Reagent Created Alleles Publications
MO1-sox21b N/A 1
PHENOTYPE
Data: Fig. 4 from Pauls et al., 2012
Observed in:
DISEASE ASSOCIATED WITH sox21b HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH sox21b VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process lens development in camera-type eye (more)
Cellular Component nucleus (more)
Molecular Function sequence-specific DNA binding (more)
GO Terms (all 10)
PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA sox21b-201 (1)    Ensembl 1367
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM sox21b No data available
MARKER RELATIONSHIPS
sox21b Contained in: [BAC] CH211-247E2 (1)
sox21b Encodes: [cDNA] MGC:110678 (1)
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_001009888 (1) 1374 nt
Genomic GenBank:CT027987 (1) 178618 nt
Select Tool
Polypeptide UniProtKB:Q6RVD7 (1) 245 aa
Sequence Information (all 11)
ORTHOLOGY for sox21b ( Chr: 9 )
CITATIONS (30)