ZFIN ID: ZDB-GENE-040426-951
Gene Name: C-type lectin domain containing 16A
Gene Symbol: clec16a    Nomenclature History

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Previous Name: zgc:56230

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 3 Mapping Details/Browsers
Description: Predicted to have Rab GTPase binding activity. Predicted to be involved in endosomal transport; endosome to lysosome transport; and regulation of autophagosome maturation. Predicted to colocalize with late endosome. Human ortholog(s) of this gene implicated in Addison's disease; multiple sclerosis; rheumatoid arthritis; and type 1 diabetes mellitus. Orthologous to human CLEC16A (C-type lectin domain containing 16A).
Genome Resources: Alliance (1),  Gene:393184 (1),  Ensembl(GRCz11):ENSDARG00000038094 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:56230]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
High Throughput Expression: GEO (1) Expression Atlas (1)
PHENOTYPE No data available
DISEASE ASSOCIATED WITH clec16a HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH clec16a VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process endosomal transport (more)
Cellular Component endolysosome membrane (more)
Molecular Function Rab GTPase binding (more)
GO Terms (all 7)
PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA clec16a-202 (1)    Ensembl 6533
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM clec16a No data available
MARKER RELATIONSHIPS
clec16a Contained in: [BAC] CH211-59B16 (1), DKEY-202L16 (1) (order this)
clec16a Encodes: [cDNA] MGC:56230 (1)
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_200215 (1)
Genomic GenBank:BX470132 (1) 163404 nt
Select Tool
Polypeptide UniProtKB:X1WGI7 (1) 926 aa
Sequence Information (all 21)
ORTHOLOGY for clec16a ( Chr: 3 )
CITATIONS (18)