ZFIN ID: ZDB-GENE-040426-951
Gene Name: C-type lectin domain containing 16A
Gene Symbol: clec16a
Sequence Ontology ID : SO:0000704

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Previous Name: zgc:56230

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(Including Attributions)
Location: Chr: 3 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have Rab GTPase binding activity; predicted to be involved in endosomal transport and endosome to lysosome transport; predicted to colocalize with the late endosome; orthologous to human  ...
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:56230]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
PHENOTYPE No data available
DISEASE ASSOCIATED WITH clec16a HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH clec16a VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process biological_process (more)
Cellular Component cellular_component (more)
Molecular Function molecular_function (more)
GO Terms (all 3)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR019155 (1)
  • InterPro:IPR039272 (1)
  • Pfam:PF09758 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA clec16a-001 (1) 6533
    ncRNA clec16a-002 (1) 2769
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM clec16a No data available
    MARKER RELATIONSHIPS
    clec16aContained in: [BAC] CH211-59B16 (1) (order this), DKEY-202L16 (1) (order this)
    clec16aEncodes: [cDNA] MGC:56230 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_200215 (1)
    Genomic GenBank:BX470132 (1) 163404bp
    Select Tool
    Polypeptide UniProtKB:X1WGI7 (1) 926aa
    Sequence Clusters UniGene:76554 (1)
    Sequence Information (all 22)
    OTHER clec16a GENE PAGES
  • Alliance (1)
  • Gene:393184 (1)
  • VEGA:OTTDARG00000035105 (1)
  • Ensembl(GRCz11):ENSDARG00000038094 (2)
  • ORTHOLOGY for clec16a (Chr: 3)
    CITATIONS (17)