ZFIN ID: ZDB-GENE-040426-2861
Gene Name: short chain dehydrogenase/reductase family 16C, member 5b
Gene Symbol: sdr16c5b    Nomenclature History

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Previous Names: rdhe2, sdr16c5, wu:fj05d06, zgc:63829

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 7 Mapping Details/Browsers
Description: Predicted to have oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. Predicted to localize to lipid droplet. Is expressed in liver. Orthologous to human SDR16C5 (short chain dehydrogenase/reductase family 16C member 5).
Genome Resources: Alliance (1),  Gene:406799 (1),  Ensembl(GRCz11):ENSDARG00000017794 (2)
GENE EXPRESSION
All Expression Data: Fig. 1 from Cheng et al., 2006
Wild-type Stages, Structures: Adult (90d-730d, breeding adult) to Adult (90d-730d, breeding adult)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la016189Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa7094 Point Mutation Unknown Premature Stop ENU
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH sdr16c5b HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH sdr16c5b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component lipid droplet (more)
    Molecular Function oxidoreductase activity (more)
    GO Terms (all 3)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA sdr16c5b-201 (1)    Ensembl 1506
    sdr16c5b-202 (1)    Ensembl 891
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM sdr16c5b No data available
    MARKER RELATIONSHIPS
    sdr16c5b Contained in: [BAC] DKEY-29H18 (1) (order this), DKEY-171K22 (1) (order this)
    sdr16c5b Encodes: [EST] fj05d06 (1)
    [cDNA] MGC:63829 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_214771 (1) 1500 nt
    Genomic GenBank:BX323844 (1) 235079 nt Blast at MegaBLAST
    Polypeptide UniProtKB:Q7SZ49 (1) 306 aa
    Sequence Information (all 13)
    ORTHOLOGY for sdr16c5b ( Chr: 7 )
    CITATIONS (28)