Gene

lsm14aa

ID

ZDB-GENE-040426-1567

Name

LSM14A mRNA processing body assembly factor a

Symbol

lsm14aa Nomenclature History

Previous Names

fam61a (1)
lsm14a
wu:fj52e11 (1)
zgc:63681
zgc:66203 (1)
zgc:77302

Type

protein_coding_gene

Location

Chr: 25 Mapping Details/Browsers

Description

Orthologous to human LSM14A (LSM14A mRNA processing body assembly factor).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

2 figures from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

MGC:77302 (1 image)
MGC:63681 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With lsm14aa Human Ortholog

No data available

Associated With lsm14aa Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR019050	FDF domain
Domain	IPR025609	Lsm14-like, N-terminal
Domain	IPR025761	FFD box
Domain	IPR025762	DFDF domain
Domain	IPR025768	TFG box
Domain	IPR047575	Sm domain
Homologous_superfamily	IPR010920	LSM domain superfamily

Domain Details Per Protein

Protein	Length	DFDF domain	FDF domain	FFD box	Lsm14-like, N-terminal	LSM domain superfamily	Sm domain	TFG box
UniProtKB:Q7SXR4 InterPro PDB	85
UniProtKB:A0A8M9P6D7 InterPro	440
UniProtKB:Q6P111 InterPro PDB	443
UniProtKB:A0A8M9PUV2 InterPro	470
UniProtKB:A0A8M2BAB1 InterPro	413

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	lsm14aa-201 (1) Ensembl	Havana	2074 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	lsm14aa-203 (1) Ensembl	Havana	892 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	lsm14aa-204 (1) Ensembl	Havana	804 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations