ZFIN ID: ZDB-GENE-040121-6
Gene Name: LIM domain binding 3a
Gene Symbol: ldb3a
Sequence Ontology ID : SO:0000704

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Names: ldb3, cypher (1), hm:zehn1639, zasp (1), zehn1639

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Location: Chr: 13 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have metal ion binding activity; involved in several processes, including animal organ development, locomotory behavior, and somitogenesis; predicted to localize to the integral  ...
GENE EXPRESSION
All Expression Data: 12 figures from 4 publications
Directly Submitted Expression Data: 6 figures (10 images) from Thisse et al., 2004 [MGC:56098]
Wild-type Stages, Structures: Segmentation:1-4 somites (10.33h-11.66h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa1447 Point Mutation Unknown Splice Site ENU
sa35470 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa42182 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa42183 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE
    Data: 6 figures from 2 publications
    Observed in:
    DISEASE ASSOCIATED WITH ldb3a HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    dilated cardiomyopathy 1C Cardiomyopathy, dilated, 1C, with or without LVNC 601493
    Cardiomyopathy, hypertrophic, 24 601493
    Left ventricular noncompaction 3 601493
    myofibrillar myopathy 4 Myopathy, myofibrillar, 4 609452
    DISEASE ASSOCIATED WITH ldb3a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process heart development (more)
    Cellular Component integral component of membrane (more)
    Molecular Function metal ion binding (more)
    GO Terms (all 7)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001478 (1)
  • InterPro:IPR001781 (1)
  • InterPro:IPR006643 (1)
  • InterPro:IPR031847 (1)
  • InterPro:IPR036034 (1)
  • PROSITE:PS00478 (1)
  • PROSITE:PS50023 (1)
  • PROSITE:PS50106 (1)
  • Pfam:PF00412 (1)
  • Pfam:PF00595 (1)
  • Pfam:PF15936 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA ldb3a-201 (1) 852
    ldb3a-202 (1) 780
    ldb3a-203 (1) 900
    ldb3a-204 (1) 1322
    ldb3a-205 (1) 4619
    ldb3a-206 (1) 1791
    ldb3a-208 (1) 777
    ldb3a-209 (1) 1767
    ldb3a-210 (1) 791
    aberrant processed transcript ldb3a-211 (1) 1516
    mRNA ldb3a-212 (1) 2119
    ldb3a-213 (1) 856
    ldb3a-214 (1) 925
    ldb3a-215 (1) 911
    ldb3a-216 (1) 867
    ldb3a-217 (1) 880
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM ldb3a
    MARKER RELATIONSHIPS
    ldb3aContained in: [BAC] DKEY-230G10 (1) (order this)
    ldb3aEncodes: [EST] zehn1639
    [cDNA] MGC:56098 (1) (order this), MGC:191225 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_201505 (1) 1355bp
    Genomic GenBank:BX897719 (1) 216407bp Blast at MegaBLAST
    Polypeptide UniProtKB:E7FCN3 (1) 649aa
    Sequence Clusters UniGene:76474 (1)
    Sequence Information (all 78)
    OTHER ldb3a GENE PAGES
  • Alliance (1)
  • Gene:794339 (1)
  • VEGA:OTTDARG00000027759 (1)
  • ORTHOLOGY for ldb3a (Chr: 13)
    CITATIONS (28)