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ZIRC
ZFIN ID: ZDB-GENE-030131-966
Gene Name: ubiquitin specific peptidase 39
Gene Symbol: usp39
Sequence Ontology ID : SO:0000704

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Previous Names: wu:fb54d10, wu:fb79f05, zgc:158428

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(Including Attributions)
Location: Chr: 5 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have thiol-dependent ubiquitinyl hydrolase activity and zinc ion binding activity; involved in adenohypophysis morphogenesis, cranial skeletal system development, and regulation of RNA  ...
GENE EXPRESSION
All Expression Data: Fig. 2 from RĂ­os et al., 2011
Wild-type Stages, Structures: Segmentation:20-25 somites (19.0h-22.0h) to Pharyngula:High-pec (42.0h-48.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa40605 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • zf232 Point Mutation Exon 11 Premature Stop ENU
    Targeting reagents:
    DISEASE ASSOCIATED WITH usp39 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH usp39 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process adenohypophysis morphogenesis (more)
    Molecular Function metal ion binding (more)
    GO Terms (all 9)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA usp39-201 (1) 1856
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM usp39 No data available
    MARKER RELATIONSHIPS
    usp39Contained in: [BAC] CH211-283H6 (1) (order this)
    usp39Encodes: [EST] fb54d10, fb79f05 (1)
    [cDNA] MGC:158428 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001080070 (1) 1874bp
    Genomic GenBank:BX537304 (1) 157564bp
    Select Tool
    Polypeptide UniProtKB:A1A5Z2 (1) 497aa
    Sequence Clusters UniGene:77033 (1)
    Sequence Information (all 15)
    ORTHOLOGY for usp39 (Chr: 5)
    CITATIONS (22)