ZFIN ID: ZDB-GENE-030131-9169
Gene Name: chitinase domain containing 1
Gene Symbol: chid1    Nomenclature History

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Previous Names: fb02e07, wu:fb02e07, zgc:66396

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 25 Mapping Details/Browsers
Description: Predicted to have oligosaccharide binding activity. Predicted to be involved in carbohydrate metabolic process. Predicted to localize to extracellular region. Is expressed in hatching gland; notochord; and polster. Orthologous to human CHID1 (chitinase domain containing 1).
Genome Resources: Alliance (1),  Gene:337225 (1),  Ensembl(GRCz11):ENSDARG00000069673 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 6 figures (12 images) from Thisse et al., 2004 [MGC:66396]
Wild-type Stages, Structures: Segmentation:1-4 somites (10.33h-11.66h) to Hatching:Long-pec (48.0h-60.0h)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la023362Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH chid1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH chid1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process carbohydrate metabolic process (more)
    Cellular Component extracellular region (more)
    Molecular Function chitin binding (more)
    GO Terms (all 5)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA chid1-201 (1)    Ensembl 1407
    ncRNA chid1-002 (1)    Ensembl 721
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM chid1 No data available
    MARKER RELATIONSHIPS
    chid1 Contained in: [BAC] CH211-43O9 (1)
    chid1 Encodes: [EST] fb02e07
    [cDNA] MGC:66396 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_200057 (1) 1325 nt
    Genomic GenBank:CU138509 (1) 153571 nt
    Select Tool
    Polypeptide UniProtKB:F1RB70 (1) 391 aa
    Sequence Information (all 13)
    ORTHOLOGY for chid1 ( Chr: 25 )
    CITATIONS (27)