ZFIN ID: ZDB-GENE-030131-7864
Gene Name: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E
Gene Symbol: sema3e
Sequence Ontology ID : SO:0000704

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Previous Names: fj37c11, si:ch211-120m13.2, wu:fj37c11

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(Including Attributions)
Location: Chr: 18 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Wild-type Stages, Structures: Segmentation:14-19 somites (16.0h-19.0h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
 
Curated Microarray Expression: GEO (1)
PHENOTYPE
Data: 2 figures from Lamont et al., 2009
Observed in:
DISEASE ASSOCIATED WITH sema3e HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
CHARGE syndrome ?CHARGE syndrome 214800
DISEASE ASSOCIATED WITH sema3e VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process sprouting angiogenesis (more)
Cellular Component extracellular space (more)
Molecular Function neuropilin binding (more)
GO Terms (all 4)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001627 (1)
  • InterPro:IPR003599 (1)
  • InterPro:IPR007110 (1)
  • InterPro:IPR013151 (1)
  • InterPro:IPR013783 (1)
  • InterPro:IPR015513 (1)
  • InterPro:IPR015943 (1)
  • InterPro:IPR016201 (1)
  • InterPro:IPR027231 (1)
  • InterPro:IPR036179 (1)
  • InterPro:IPR036352 (1)
  • PROSITE:PS50835 (1)
  • PROSITE:PS51004 (1)
  • Pfam:PF00047 (1)
  • Pfam:PF01403 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA sema3e-001 (1) 3044
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM sema3e No data available
    MARKER RELATIONSHIPS
    sema3eContained in: [BAC] CH211-120M13 (1) (order this)
    sema3eEncodes: [EST] fj37c11
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001045084 (1) 3044bp
    Genomic RefSeq:NW_018395006 (1) Blast at MegaBLAST
    Polypeptide UniProtKB:Q1LYS1 (1) 768aa
    Sequence Clusters UniGene:74189 (1)
    Sequence Information (all 19)
    OTHER sema3e GENE PAGES
  • Alliance (1)
  • Gene:565658 (1)
  • VEGA:OTTDARG00000009873 (1)
  • ORTHOLOGY for sema3e (Chr: 18)
    CITATIONS (20)