ZFIN ID: ZDB-GENE-030131-7582
Gene Name: rogdi atypical leucine zipper
Gene Symbol: rogdi    Nomenclature History

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Previous Names: fj32e07, wu:fj32e07, zgc:55665

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 3 Mapping Details/Browsers
Description: Predicted to be involved in developmental process and vacuolar acidification. Predicted to localize to RAVE complex and nucleus. Is expressed in nervous system. Human ortholog(s) of this gene implicated in Kohlschutter-Tonz syndrome. Orthologous to human ROGDI (rogdi atypical leucine zipper).
Genome Resources: Alliance (1),  Gene:335642 (1),  Ensembl(GRCz11):ENSDARG00000104413 (1)
GENE EXPRESSION
All Expression Data: 5 figures from 2 publications
Directly Submitted Expression Data: 4 figures (11 images) from Thisse et al., 2004 [MGC:55665]
Wild-type Stages, Structures: Cleavage:16-cell (1.5h-1.75h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS No data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH rogdi HUMAN ORTHOLOG
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
Kohlschutter-Tonz syndrome Alliance Kohlschutter-Tonz syndrome 226750
DISEASE ASSOCIATED WITH rogdi VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process developmental process (more)
Cellular Component axon (more)
Molecular Function molecular_function (more)
GO Terms (all 14)
PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA rogdi-203 (1)    Ensembl 2061
ncRNA rogdi-002 (1)    Ensembl 459
rogdi-003 (1)    Ensembl 909
rogdi-004 (1)    Ensembl 817
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM rogdi No data available
MARKER RELATIONSHIPS
rogdi Contained in: [BAC] CH211-214K13 (1)
[Fosmid] CH1073-443F11 (1)
rogdi Encodes: [EST] fj32e07
[cDNA] MGC:55665 (1)
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_199963 (1) 1970 nt
Genomic GenBank:BX908771 (1) 114109 nt
Select Tool
Polypeptide UniProtKB:A0A0R4IF42 (1) 284 aa
Sequence Information (all 14)
ORTHOLOGY for rogdi ( Chr: 3 )
CITATIONS (21)