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General Information
ZIRC
ZFIN ID: ZDB-GENE-030131-6778
Gene Name: RTF1 homolog, Paf1/RNA polymerase II complex component
Gene Symbol: rtf1
Sequence Ontology ID : SO:0000704

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Previous Names: fb33g03, wu:fa04h07, wu:fb33g03

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(Including Attributions)
Location: Chr: 13 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have RNA polymerase II C-terminal domain phosphoserine binding activity. Involved in several processes, including animal organ development; pigmentation; and post-anal tail  ...
GENE EXPRESSION
All Expression Data: Fig. s3 from Langenbacher et al., 2011
Wild-type Stages, Structures: Pharyngula:Prim-5 (24.0h-30.0h) to Pharyngula:Prim-5 (24.0h-30.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
kt641 Point Mutation Unknown Premature Stop ENU
Targeting reagents:
DISEASE ASSOCIATED WITH rtf1 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH rtf1 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process neural crest cell development (more)
Cellular Component nucleus (more)
Molecular Function DNA binding (more)
GO Terms (all 10)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR004343 (1)
  • InterPro:IPR036128 (1)
  • PROSITE:PS51360 (1)
  • Pfam:PF03126 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA rtf1-201 (1) 3122
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM rtf1 No data available
    MARKER RELATIONSHIPS
    rtf1Contained in: [BAC] DKEY-71P21 (1) (order this)
    rtf1Encodes: [EST] fa04h07, fb33g03, IMAGE:6805891
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001083577 (1) 3079bp
    Genomic GenBank:BX284673 (1) 171564bp
    Select Tool
    Polypeptide UniProtKB:G1K2X4 (1) 701aa
    Sequence Clusters UniGene:75477 (1)
    Sequence Information (all 19)
    ORTHOLOGY for rtf1 (Chr: 13)
    CITATIONS (19)