ZFIN ID: ZDB-GENE-030131-5475
Gene Name: proline-rich nuclear receptor coactivator 2
Gene Symbol: pnrc2    Nomenclature History

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Previous Names: fb81a06, wu:cegs2777, wu:fb51a04, wu:fb81a06, wu:fd19g06

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 16 Mapping Details/Browsers
Description: Involved in nuclear-transcribed mRNA catabolic process. Predicted to localize to P-body and nucleus. Is expressed in nervous system; otic vesicle; and trunk. Orthologous to human PNRC2 (proline rich nuclear receptor coactivator 2).
Genome Resources: Alliance (1),  Gene:565522 (1),  Ensembl(GRCz11):ENSDARG00000053291 (1)
GENE EXPRESSION
All Expression Data: 7 figures from 4 publications
Directly Submitted Expression Data: 4 figures (12 images) from Rauch et al., 2003 [cegs2777]
Wild-type Stages, Structures: Cleavage:8-cell (1.25h-1.5h) to Adult (90d-730d, breeding adult)
 
High Throughput Expression: GEO (1) Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
oz22 Small Deletion Exon 3 Frameshift, Premature Stop CRISPR
Sequence Targeting Reagents
Targeting Reagent Created Alleles Publications
CRISPR1-pnrc2 1
MO1-pnrc2 N/A 1
MO2-pnrc2 N/A 1
DISEASE ASSOCIATED WITH pnrc2 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH pnrc2 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process nuclear-transcribed mRNA catabolic process (more)
Cellular Component nucleus (more)
GO Terms (all 5)
PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA pnrc2-202 (1)    Ensembl 3146
pnrc2-203 (1)    Ensembl 183
ncRNA pnrc2-002 (1)    Ensembl 676
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM pnrc2 No data available
MARKER RELATIONSHIPS
pnrc2 Contained in: [BAC] CH211-9M16, DKEY-66C10 (order this)
pnrc2 Encodes: [EST] cegs2777 (1) (order this), fb51a04, fb81a06, fd19g06, IMAGE:6805741
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_001130192 (1) 3149 nt
Genomic GenBank:AL844887 (1) 243870 nt Blast at MegaBLAST
Polypeptide UniProtKB:B7TWP7 (1) 148 aa
Sequence Information (all 24)
ORTHOLOGY for pnrc2 ( Chr: 16 )
CITATIONS (23)