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ZIRC
ZFIN ID: ZDB-GENE-030131-5408
Gene Name: valosin containing protein
Gene Symbol: vcp
Sequence Ontology ID : SO:0000704

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Previous Names: CDC48 (1), wu:fd16d05, wu:fj63d11

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(Including Attributions)
Location: Chr: 5 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have ATPase activity and polyubiquitin modification-dependent protein binding activity. Involved in chordate embryonic development; locomotory behavior; and regulation of cellular  ...
GENE EXPRESSION
All Expression Data: 6 figures from 6 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:56043]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la015693Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    DISEASE ASSOCIATED WITH vcp HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    amyotrophic lateral sclerosis type 14 Amyotrophic lateral sclerosis 14, with or without frontotemporal dementia 613954
    Charcot-Marie-Tooth disease type 2Y Charcot-Marie-Tooth disease, type 2Y 616687
    inclusion body myopathy with Paget disease of bone and frontotemporal dementia Inclusion body myopathy with early-onset Paget disease and frontotemporal dementia 1 167320
    DISEASE ASSOCIATED WITH vcp VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process chordate embryonic development (more)
    Cellular Component cytoplasm (more)
    Molecular Function ATPase activity (more)
    GO Terms (all 32)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA vcp-004 (1) 594
    vcp-006 (1) 418
    vcp-007 (1) 686
    vcp-008 (1) 671
    vcp-009 (1) 703
    vcp-010 (1) 697
    vcp-011 (1) 598
    mRNA vcp-201 (1) 3041
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM vcp No data available
    MARKER RELATIONSHIPS
    vcpContained in: [BAC] CH211-113N10 (1) (order this)
    vcpContains: [SNP] rs3727892 (1), rs3727893 (1), rs3727894 (1), rs3727895 (1), rs3727896 (1)
    vcpEncodes: [EST] fd16d05, fj63d11
    [cDNA] MGC:56043 (1) (order this), MGC:77072 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_201481 (1) 2659bp
    Genomic GenBank:CR318632 (1) 143278bp
    Select Tool
    Polypeptide UniProtKB:A0A2R8QNF0 (1) 806aa
    Sequence Clusters UniGene:75122 (1)
    Sequence Information (all 22)
    ORTHOLOGY for vcp (Chr: 5)
    CITATIONS (39)