ZFIN ID: ZDB-GENE-030131-4415
Gene Name: serine incorporator 1
Gene Symbol: serinc1    Nomenclature History

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Previous Names: tde2, wu:fd02g01, wu:fd02g07 (1), zgc:77597

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 20 Mapping Details/Browsers
Description: Predicted to be involved in phosphatidylserine metabolic process and sphingolipid metabolic process. Predicted to localize to the integral component of membrane. Is expressed in nervous system. Orthologous to human SERINC1 (serine incorporator 1).
Genome Resources: Alliance (1),  Gene:325690 (1),  Ensembl(GRCz11):ENSDARG00000009106 (2)
GENE EXPRESSION
All Expression Data: 14 figures from 5 publications
Directly Submitted Expression Data: 5 figures (12 images) from Rauch et al., 2003 [cegs2588]
  6 figures (6 images) from Thisse et al., 2004 [IMAGE:7157584]
Wild-type Stages, Structures: Segmentation:20-25 somites (19.0h-22.0h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS No data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH serinc1 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH serinc1 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process phosphatidylserine metabolic process (more)
Cellular Component integral component of membrane (more)
GO Terms (all 7)
PROTEIN FAMILIES, DOMAINS AND SITES
Type InterPro ID Name
Family IPR005016 Serine incorporator/TMS membrane protein
Family IPR029557 Serine incorporator 1/3
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA serinc1-201 (1)    Ensembl 2371
ncRNA serinc1-002 (1)    Ensembl 731
serinc1-003 (1)    Ensembl 604
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM serinc1 No data available
MARKER RELATIONSHIPS
serinc1 Contained in: [BAC] DKEY-150H13 (order this)
serinc1 Encodes: [EST] cegs2588 (1) (order this), fd02g01, fd02g07, IMAGE:7157584 (1)
[cDNA] MGC:77597 (1)
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_199727 (1) 2361 nt
Genomic GenBank:AL845365 (1) 212942 nt Blast at MegaBLAST
Polypeptide UniProtKB:Q7ZVQ2 (1) 478 aa
Sequence Information (all 17)
ORTHOLOGY for serinc1 ( Chr: 20 )
CITATIONS (25)