ZFIN ID: ZDB-GENE-030131-4275
Gene Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Aa
Gene Symbol: ddx39aa
Sequence Ontology ID : SO:0000704

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Previous Names: ddx39a, wu:fc87b12, zgc:55881

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(Including Attributions)
Location: Chr: 1 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:55881]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa19553 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa38287 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • zko875a Insertion Unknown Unknown CRISPR
  • China Zebrafish Resource Center (CZRC, ZKO consortium) (order this)
  • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH ddx39aa HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH ddx39aa VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process cellular response to DNA damage stimulus (more)
    Cellular Component cytoplasm (more)
    Molecular Function ATP binding (more)
    GO Terms (all 11)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001650 (1)
  • InterPro:IPR011545 (1)
  • InterPro:IPR014001 (1)
  • InterPro:IPR014014 (1)
  • InterPro:IPR027417 (1)
  • PROSITE:PS51192 (1)
  • PROSITE:PS51194 (1)
  • PROSITE:PS51195 (1)
  • Pfam:PF00270 (1)
  • Pfam:PF00271 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA ddx39aa-001 (1) 1667
    ddx39aa-002 (1) 815
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM ddx39aa No data available
    MARKER RELATIONSHIPS
    ddx39aaContained in: [BAC] CH211-239F4 (1) (order this)
    ddx39aaEncodes: [cDNA] MGC:55881 (1) (order this), MGC:86865 (1) (order this), MGC:191329 (1) (order this)
    ddx39aaHas Artifact: [EST] fc87b12
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_199721 (1) 1539bp
    Genomic GenBank:AL953855 (1) 146080bp
    Select Tool
    Polypeptide UniProtKB:F6NVB9 (1) 428aa
    Sequence Clusters UniGene:1111 (1)
    Sequence Information (all 25)
    OTHER ddx39aa GENE PAGES
  • Alliance (1)
  • Gene:325550 (1)
  • VEGA:OTTDARG00000019423 (1)
  • Ensembl(GRCz11):ENSDARG00000006225 (2)
  • ORTHOLOGY for ddx39aa (Chr: 1)
    CITATIONS (20)