ZFIN ID: ZDB-GENE-030131-4275
Gene Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Aa
Gene Symbol: ddx39aa    Nomenclature History

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Names: ddx39a, wu:fc87b12, zgc:55881

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 1 Mapping Details/Browsers
Description: Predicted to have RNA binding activity and RNA helicase activity. Predicted to be involved in mRNA export from nucleus and mRNA splicing, via spliceosome. Orthologous to human DDX39A (DExD-box helicase 39A).
Genome Resources: Alliance (1),  Gene:325550 (1),  Ensembl(GRCz11):ENSDARG00000006225 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:55881]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa19553 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa38287 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • zko875a Insertion Unknown Unknown CRISPR
  • China Zebrafish Resource Center (CZRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-ddx39aa 1
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH ddx39aa HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH ddx39aa VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process mRNA export from nucleus (more)
    Molecular Function ATP binding (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA ddx39aa-201 (1)    Ensembl 1667
    ddx39aa-202 (1)    Ensembl 815
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM ddx39aa No data available
    MARKER RELATIONSHIPS
    ddx39aa Contained in: [BAC] CH211-239F4 (1)
    ddx39aa Encodes: [cDNA] MGC:55881 (1), MGC:86865 (1), MGC:191329 (1)
    ddx39aa Has Artifact: [EST] fc87b12
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_199721 (1) 1539 nt
    Genomic GenBank:AL953855 (1) 146080 nt
    Select Tool
    Polypeptide UniProtKB:A2AWA1 (1) 427 aa
    Sequence Information (all 23)
    ORTHOLOGY for ddx39aa ( Chr: 1 )
    CITATIONS (22)