ZFIN ID: ZDB-GENE-030829-32
Gene Name: spalt-like transcription factor 2
Gene Symbol: sall2    Nomenclature History

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Previous Names: fc29e07, sb:cb763, si:ch211-10e2.7, wu:fc29e07

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 2 Mapping Details/Browsers
Description: Predicted to have DNA-binding transcription factor activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to localize to nucleus. Is expressed in central nervous system; neural tube; and pharyngeal arch 3-7 skeleton. Human ortholog(s) of this gene implicated in coloboma. Orthologous to human SALL2 (spalt like transcription factor 2).
Genome Resources: Alliance (1),  Gene:568044 (1),  Ensembl(GRCz11):ENSDARG00000075116 (2)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa45113 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH sall2 HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    coloboma Alliance ?Coloboma, ocular, autosomal recessive 216820
    DISEASE ASSOCIATED WITH sall2 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process regulation of transcription, DNA-templated (more)
    Cellular Component nucleus (more)
    Molecular Function metal ion binding (more)
    GO Terms (all 5)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA sall2-201 (1)    Ensembl 3941
    Browsers: NCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM sall2 No data available
    MARKER RELATIONSHIPS
    sall2 Contained in: [BAC] CH211-10E2 (1)
    sall2 Contains: [SNP] rs3727640 (1)
    sall2 Encodes: [EST] cb763 (1) (order this), fc29e07
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:XM_017351980 (1)
    Genomic GenBank:AL928674 (1) 205118 nt Blast at MegaBLAST
    Polypeptide UniProtKB:F1RAH4 (1) 1263 aa
    Sequence Information (all 17)
    ORTHOLOGY for sall2 ( Chr: 2 )
    CITATIONS (19)