ZFIN ID: ZDB-GENE-030131-2956
Gene Name: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl
Gene Symbol: sema3bl    Nomenclature History

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Previous Names: sema3g (1), fc22d04, si:ch211-106g4.1, wu:fc22d04 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 8 Mapping Details/Browsers
Description: Exhibits neuropilin binding activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to localize to extracellular space and integral component of plasma membrane. Orthologous to human SEMA3G (semaphorin 3G).
Genome Resources: Alliance (1),  Gene:100004611 (1),  Ensembl(GRCz11):ENSDARG00000007560 (1)
GENE EXPRESSION
All Expression Data: 2 figures from Askary et al., 2017
High Throughput Expression: GEO (1) Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la016327Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa15484 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa21309 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa34420 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-sema3bl
    1
    CRISPR2-sema3bl
    1
    MO1-sema3bl N/A 1
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH sema3bl HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH sema3bl VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process axon guidance (more)
    Cellular Component membrane (more)
    Molecular Function neuropilin binding (more)
    GO Terms (all 12)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA sema3bl-201 (1)    Ensembl 3253
    sema3bl-202 (1)    Ensembl 546
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM sema3bl No data available
    MARKER RELATIONSHIPS
    sema3bl Contained in: [BAC] CH211-106G4 (1)
    sema3bl Encodes: [EST] fc22d04
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001122712 (1) 3253 nt
    Genomic GenBank:BX548158 (1) 190936 nt
    Select Tool
    Polypeptide UniProtKB:M9MM97 (1) 771 aa
    Sequence Information (all 10)
    ORTHOLOGY for sema3bl ( Chr: 8 )
    CITATIONS (24)