Gene

puf60a

ID
ZDB-GENE-030131-2891
Name
poly-U binding splicing factor a
Symbol
puf60a Nomenclature History
Previous Names
  • fc21a05
  • wu:fc21a05 (1)
  • wu:fi43a08
Type
protein_coding_gene
Location
Chr: 2 Mapping Details/Browsers
Description
Predicted to have RNA binding activity. Predicted to be involved in alternative mRNA splicing, via spliceosome; mRNA splice site selection; and regulation of alternative mRNA splicing, via spliceosome. Predicted to localize to nucleus. Is expressed in central nervous system and pharynx. Orthologous to human PUF60 (poly(U) binding splicing factor 60).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
12 figures from Rauch et al., 2003
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With puf60a Human Ortholog
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
Verheij syndrome 615583
Associated With puf60a Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR000504 RNA recognition motif domain
Domain IPR003954 RNA recognition motif domain, eukaryote
Domain IPR034209 PUF60, RNA recognition motif 1
Domain IPR034211 PUF60, RNA recognition motif 2
Domain IPR034212 PUF60, RNA recognition motif 3
Homologous_superfamily IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily IPR035979 RNA-binding domain superfamily
Domain Details Per Protein
Protein Length Nucleotide-binding alpha-beta plait domain superfamily PUF60, RNA recognition motif 1 PUF60, RNA recognition motif 2 PUF60, RNA recognition motif 3 RNA-binding domain superfamily RNA recognition motif domain RNA recognition motif domain, eukaryote
UniProtKB:A8E4R7 518
UniProtKB:A0A2R8QFM1 538
UniProtKB:B0S627 519
UniProtKB:A4IGG2 379
UniProtKB:F1QB76 365
UniProtKB:F6NTM3 289
UniProtKB:F6NPA6 162
UniProtKB:F1QZ57 552
UniProtKB:E7FE61 291
UniProtKB:F6P3Y7 236
UniProtKB:F6NQ93 233
Transcripts
Genome Browsers
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations